Wall clock time and date at job start Tue Mar 31 2020 21:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99890 * 2 1 4 4 H 1.48493 * 109.47186 * 270.00262 * 3 2 1 5 5 H 1.48501 * 109.46818 * 30.00346 * 3 2 1 6 6 H 1.48499 * 109.46807 * 150.00340 * 3 2 1 7 7 C 1.37871 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46917 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47415 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99823 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00306 * 179.97438 * 13 12 11 16 16 C 1.46924 * 120.62844 * 359.72255 * 15 13 12 17 17 C 1.53196 * 108.77321 * 126.66492 * 16 15 13 18 18 C 1.53039 * 109.31227 * 54.63738 * 17 16 15 19 19 C 1.53040 * 109.53456 * 298.63167 * 18 17 16 20 20 H 1.08996 * 109.50090 * 301.41692 * 19 18 17 21 21 N 1.46905 * 109.49448 * 181.31760 * 19 18 17 22 22 C 1.46900 * 110.99872 * 153.94602 * 21 19 18 23 23 C 1.53175 * 109.54382 * 273.28865 * 22 21 19 24 24 C 1.53100 * 109.15581 * 183.24141 * 23 22 21 25 25 O 1.42903 * 109.48799 * 57.47873 * 24 23 22 26 26 C 1.42908 * 114.09239 * 298.88393 * 25 24 23 27 27 C 1.53095 * 109.41515 * 61.16204 * 26 25 24 28 28 C 1.46923 * 120.63070 * 180.02562 * 15 13 12 29 29 H 0.97006 * 120.00102 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47166 * 59.99852 * 9 7 2 31 31 H 1.09010 * 109.47045 * 300.00221 * 9 7 2 32 32 H 1.08995 * 109.47075 * 59.99622 * 10 9 7 33 33 H 1.09003 * 109.46454 * 299.99229 * 10 9 7 34 34 H 1.08995 * 109.47713 * 59.99801 * 11 10 9 35 35 H 1.09006 * 109.47240 * 299.98895 * 11 10 9 36 36 H 1.09008 * 109.47079 * 59.99810 * 12 11 10 37 37 H 1.09002 * 109.47204 * 300.00064 * 12 11 10 38 38 H 1.08999 * 109.58622 * 246.45430 * 16 15 13 39 39 H 1.09001 * 109.58573 * 6.88348 * 16 15 13 40 40 H 1.09002 * 109.49705 * 294.68531 * 17 16 15 41 41 H 1.09007 * 109.52366 * 174.60461 * 17 16 15 42 42 H 1.09004 * 109.45815 * 178.61469 * 18 17 16 43 43 H 1.08993 * 109.46109 * 58.65242 * 18 17 16 44 44 H 1.00900 * 110.99709 * 277.90077 * 21 19 18 45 45 H 1.09000 * 109.54420 * 33.46978 * 22 21 19 46 46 H 1.08999 * 109.51896 * 303.05719 * 23 22 21 47 47 H 1.08997 * 109.52397 * 63.24434 * 23 22 21 48 48 H 1.08998 * 109.40936 * 297.49122 * 24 23 22 49 49 H 1.09009 * 109.49120 * 177.50948 * 24 23 22 50 50 H 1.08997 * 109.48015 * 301.17646 * 26 25 24 51 51 H 1.09005 * 109.48817 * 181.15059 * 26 25 24 52 52 H 1.08993 * 109.51937 * 182.48539 * 27 26 25 53 53 H 1.08997 * 109.57437 * 62.32482 * 27 26 25 54 54 H 1.09003 * 109.58672 * 353.12222 * 28 15 13 55 55 H 1.09005 * 109.58422 * 113.54708 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 6 2.4745 -6.1499 -0.0018 13 6 1.7210 -7.4550 -0.0018 14 8 0.5083 -7.4550 -0.0018 15 7 2.3949 -8.6223 -0.0029 16 6 3.8640 -8.6384 -0.0101 17 6 4.3533 -9.5076 1.1526 18 6 3.7090 -10.8924 1.0554 19 6 2.1881 -10.7576 1.1597 20 1 1.9291 -10.2801 2.1047 21 7 1.5725 -12.0901 1.0980 22 6 0.2730 -12.1018 1.7828 23 6 0.4819 -12.3846 3.2736 24 6 -0.8817 -12.4752 3.9637 25 8 -1.6659 -13.4931 3.3383 26 6 -1.9334 -13.2559 1.9547 27 6 -0.6121 -13.1989 1.1834 28 6 1.6743 -9.9027 -0.0034 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5566 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8718 -3.6043 -0.8906 34 1 0.8539 -5.0445 -0.8913 35 1 0.8534 -5.0451 0.8887 36 1 3.1012 -6.0926 0.8882 37 1 3.1011 -6.0918 -0.8918 38 1 4.2202 -9.0545 -0.9525 39 1 4.2412 -7.6227 0.1091 40 1 4.0738 -9.0419 2.0977 41 1 5.4377 -9.6065 1.1024 42 1 4.0745 -11.5207 1.8677 43 1 3.9686 -11.3474 0.0996 44 1 1.4808 -12.4020 0.1428 45 1 -0.2127 -11.1338 1.6598 46 1 1.0132 -13.3287 3.3942 47 1 1.0644 -11.5783 3.7192 48 1 -1.3949 -11.5174 3.8789 49 1 -0.7410 -12.7202 5.0166 50 1 -2.4603 -12.3083 1.8436 51 1 -2.5502 -14.0633 1.5599 52 1 -0.8115 -12.9743 0.1357 53 1 -0.1031 -14.1597 1.2595 54 1 0.6066 -9.7211 0.1201 55 1 1.8523 -10.4217 -0.9453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881476063.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:09 Heat of formation + Delta-G solvation = -135.840071 kcal Electronic energy + Delta-G solvation = -29781.786042 eV Core-core repulsion = 25816.077889 eV Total energy + Delta-G solvation = -3965.708153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.44275 -40.45439 -38.91062 -36.73276 -36.64865 -34.66336 -33.88586 -32.68331 -32.12211 -31.57621 -29.52764 -27.72259 -26.17269 -25.07919 -24.71607 -23.93048 -23.27654 -21.90180 -21.53481 -21.04393 -19.88539 -18.45687 -18.10718 -17.53515 -17.13431 -16.98534 -16.95284 -16.50529 -16.25579 -16.15035 -15.85155 -15.49660 -15.29580 -15.12718 -14.68418 -14.54922 -14.41676 -14.21900 -13.98554 -13.68640 -13.61684 -13.56468 -13.31805 -13.18745 -12.83009 -12.69980 -12.45831 -12.34897 -12.27317 -12.19319 -12.15412 -11.93693 -11.85866 -11.72008 -11.57631 -11.40304 -11.34126 -11.26544 -11.14379 -10.81193 -10.62197 -10.56019 -9.96487 -9.34414 -8.19467 -6.31799 1.39827 1.42252 1.53322 1.56299 1.91682 2.41259 2.85674 3.00848 3.13170 3.50903 3.62709 3.77425 3.81181 3.92929 3.98569 4.00122 4.03584 4.07844 4.10700 4.14827 4.23214 4.24546 4.43059 4.45743 4.52197 4.60984 4.63041 4.64786 4.68774 4.73076 4.74960 4.77019 4.81746 4.83855 4.85510 4.94807 5.03528 5.06322 5.12404 5.15538 5.19279 5.29119 5.31789 5.34660 5.39840 5.48474 5.55377 5.76268 5.86692 5.96325 6.17965 6.24050 6.30999 6.37048 6.86670 7.12545 7.37875 8.92792 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.001848 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.048054 B =15145.985467 C =16252.844452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.508 3.492 14 O -0.592 6.592 15 N -0.608 5.608 16 C 0.096 3.904 17 C -0.131 4.131 18 C -0.099 4.099 19 C 0.084 3.916 20 H 0.061 0.939 21 N -0.666 5.666 22 C 0.083 3.917 23 C -0.135 4.135 24 C 0.056 3.944 25 O -0.400 6.400 26 C 0.057 3.943 27 C -0.151 4.151 28 C 0.085 3.915 29 H 0.263 0.737 30 H -0.016 1.016 31 H -0.017 1.017 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.350 0.650 45 H 0.029 0.971 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.044 0.956 49 H 0.107 0.893 50 H 0.046 0.954 51 H 0.111 0.889 52 H 0.084 0.916 53 H 0.084 0.916 54 H 0.057 0.943 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 -32.182 2.584 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.133 4.133 12 C -0.165 4.165 13 C 0.299 3.701 14 O -0.473 6.473 15 N -0.341 5.341 16 C -0.025 4.025 17 C -0.170 4.170 18 C -0.137 4.137 19 C -0.027 4.027 20 H 0.079 0.921 21 N -0.297 5.297 22 C -0.027 4.027 23 C -0.174 4.174 24 C -0.021 4.021 25 O -0.319 6.319 26 C -0.020 4.020 27 C -0.189 4.189 28 C -0.040 4.040 29 H 0.071 0.929 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.170 0.830 45 H 0.047 0.953 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.125 0.875 50 H 0.065 0.935 51 H 0.129 0.871 52 H 0.102 0.898 53 H 0.102 0.898 54 H 0.076 0.924 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.960 -32.505 3.224 33.871 hybrid contribution -1.003 1.907 -0.767 2.287 sum 7.958 -30.597 2.456 31.710 Atomic orbital electron populations 1.70139 1.08098 1.27746 1.51907 1.26120 0.95808 1.03829 0.94818 0.85365 0.78677 0.77968 0.78532 1.19690 1.21002 1.18219 1.21748 0.93779 0.92132 1.50175 0.91447 1.19060 0.94700 0.93888 0.94232 1.21441 0.97791 0.92549 1.01415 1.21245 0.97470 0.93783 1.00815 1.21698 0.98943 0.89436 1.06421 1.21300 0.87588 0.86745 0.74514 1.90673 1.16540 1.88019 1.52030 1.48195 1.08392 1.04714 1.72841 1.22144 0.76888 1.03109 1.00343 1.21934 1.02077 0.95016 0.97933 1.21450 0.91823 0.96993 1.03468 1.21911 0.96492 0.87727 0.96586 0.92063 1.60724 1.23071 1.24094 1.21816 1.21559 0.89194 0.97053 0.94902 1.22128 0.97545 1.03049 0.94638 1.22701 0.90449 0.90993 0.97914 1.87908 1.72415 1.47498 1.24093 1.22698 0.96149 1.02170 0.80989 1.22339 0.96356 0.99836 1.00329 1.22381 0.96991 0.84554 1.00043 0.92871 0.99797 0.99840 0.91975 0.91905 0.94035 0.94144 0.86468 0.86299 0.89279 0.87966 0.92319 0.87730 0.90690 0.90566 0.83010 0.95292 0.90399 0.91335 0.93749 0.87467 0.93549 0.87081 0.89750 0.89764 0.92421 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.37 13.29 21.45 0.28 -59.09 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.09 -3.86 5.15 30.59 0.16 -3.71 16 11 C -0.09 -3.49 4.50 30.59 0.14 -3.35 16 12 C -0.13 -3.17 4.05 29.85 0.12 -3.04 16 13 C 0.51 14.36 7.70 87.66 0.67 15.03 16 14 O -0.59 -22.82 15.40 -3.02 -0.05 -22.87 16 15 N -0.61 -11.97 2.97 -818.83 -2.43 -14.41 16 16 C 0.10 1.09 6.34 86.36 0.55 1.64 16 17 C -0.13 -1.19 6.08 30.67 0.19 -1.00 16 18 C -0.10 -1.00 5.49 30.62 0.17 -0.83 16 19 C 0.08 1.20 2.42 45.01 0.11 1.31 16 20 H 0.06 1.15 7.28 -2.39 -0.02 1.13 16 21 N -0.67 -8.44 6.07 -468.39 -2.84 -11.29 16 22 C 0.08 1.23 2.38 45.03 0.11 1.33 16 23 C -0.14 -2.02 5.64 30.69 0.17 -1.84 16 24 C 0.06 0.88 6.84 72.02 0.49 1.37 16 25 O -0.40 -7.30 10.77 -148.98 -1.60 -8.90 16 26 C 0.06 0.80 6.84 72.01 0.49 1.29 16 27 C -0.15 -1.83 5.39 30.69 0.17 -1.67 16 28 C 0.08 1.55 5.69 86.38 0.49 2.04 16 29 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 36 H 0.12 2.36 7.70 -2.38 -0.02 2.34 16 37 H 0.12 2.36 7.94 -2.39 -0.02 2.34 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.98 5.94 -2.39 -0.01 0.97 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.35 3.59 8.01 -89.69 -0.72 2.87 16 45 H 0.03 0.56 7.27 -2.39 -0.02 0.54 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.05 7.62 -2.39 -0.02 1.03 16 48 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.06 1.43 6.49 -2.39 -0.02 1.42 16 55 H 0.08 1.19 8.04 -2.38 -0.02 1.17 16 Total: -1.00 -77.33 422.22 0.37 -76.96 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.12 Total: 14.21 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.87 Total: -21.48 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -4.99 Total: -84.78 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.65 Total: -31.77 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -77.33 0.37 -76.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881476063.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.878 kcal (2) G-P(sol) polarization free energy of solvation -77.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds