Wall clock time and date at job start Tue Mar 31 2020 21:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99918 * 2 1 4 4 H 1.48507 * 109.47360 * 240.00141 * 3 2 1 5 5 H 1.48504 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47433 * 119.99884 * 3 2 1 7 7 C 1.37878 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47305 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47278 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47391 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00064 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00193 * 180.02562 * 13 12 11 16 16 C 1.46928 * 120.63179 * 0.02562 * 15 13 12 17 17 C 1.53159 * 108.76987 * 233.59029 * 16 15 13 18 18 C 1.53046 * 109.32667 * 305.35456 * 17 16 15 19 19 C 1.53039 * 109.52798 * 61.37318 * 18 17 16 20 20 H 1.08997 * 109.49901 * 58.58690 * 19 18 17 21 21 N 1.46895 * 109.50137 * 178.65852 * 19 18 17 22 22 C 1.46900 * 110.99959 * 275.00042 * 21 19 18 23 23 C 1.53172 * 109.54439 * 274.82198 * 22 21 19 24 24 C 1.53098 * 109.16099 * 183.24037 * 23 22 21 25 25 O 1.42913 * 109.48656 * 57.47158 * 24 23 22 26 26 C 1.42901 * 114.09403 * 298.89301 * 25 24 23 27 27 C 1.53086 * 109.41726 * 61.15627 * 26 25 24 28 28 C 1.46931 * 120.63029 * 179.97438 * 15 13 12 29 29 H 0.96997 * 120.00275 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.46932 * 60.00700 * 9 7 2 31 31 H 1.08992 * 109.47584 * 300.00639 * 9 7 2 32 32 H 1.09010 * 109.46487 * 60.00524 * 10 9 7 33 33 H 1.08998 * 109.47783 * 300.00636 * 10 9 7 34 34 H 1.08995 * 109.46793 * 60.00362 * 11 10 9 35 35 H 1.09004 * 109.47050 * 300.00422 * 11 10 9 36 36 H 1.09000 * 109.47351 * 59.99690 * 12 11 10 37 37 H 1.09004 * 109.46985 * 299.99923 * 12 11 10 38 38 H 1.08999 * 109.58766 * 353.37877 * 16 15 13 39 39 H 1.09002 * 109.58364 * 113.65972 * 16 15 13 40 40 H 1.08996 * 109.48005 * 185.40991 * 17 16 15 41 41 H 1.08994 * 109.50349 * 65.31594 * 17 16 15 42 42 H 1.09002 * 109.46115 * 301.35771 * 18 17 16 43 43 H 1.09004 * 109.45806 * 181.38656 * 18 17 16 44 44 H 1.00906 * 110.99597 * 38.94906 * 21 19 18 45 45 H 1.09007 * 109.54566 * 34.99684 * 22 21 19 46 46 H 1.09006 * 109.52399 * 303.05803 * 23 22 21 47 47 H 1.09001 * 109.52417 * 63.24114 * 23 22 21 48 48 H 1.09003 * 109.40633 * 297.49655 * 24 23 22 49 49 H 1.09003 * 109.48991 * 177.49726 * 24 23 22 50 50 H 1.09002 * 109.48249 * 301.16848 * 26 25 24 51 51 H 1.09007 * 109.47507 * 181.14139 * 26 25 24 52 52 H 1.09003 * 109.51927 * 182.47974 * 27 26 25 53 53 H 1.09006 * 109.57400 * 62.32593 * 27 26 25 54 54 H 1.08998 * 109.58425 * 6.63242 * 28 15 13 55 55 H 1.08995 * 109.70793 * 246.26860 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7212 -7.4551 -0.0044 14 8 0.5084 -7.4552 -0.0043 15 7 2.3951 -8.6223 -0.0046 16 6 3.8643 -8.6384 -0.0031 17 6 4.3488 -9.5036 -1.1703 18 6 3.7052 -10.8889 -1.0753 19 6 2.1839 -10.7540 -1.1734 20 1 1.9213 -10.2733 -2.1157 21 7 1.5686 -12.0865 -1.1144 22 6 1.5355 -12.7104 -2.4439 23 6 0.2862 -12.2444 -3.1977 24 6 0.2178 -12.9612 -4.5488 25 8 0.2110 -14.3748 -4.3387 26 6 1.3779 -14.8725 -3.6808 27 6 1.4916 -14.2342 -2.2940 28 6 1.6745 -9.9028 -0.0053 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8895 32 1 2.8726 -3.6047 0.8879 33 1 2.8714 -3.6040 -0.8922 34 1 0.8534 -5.0442 -0.8922 35 1 0.8540 -5.0455 0.8877 36 1 3.1013 -6.0927 0.8868 37 1 3.1012 -6.0918 -0.8931 38 1 4.2410 -7.6224 -0.1202 39 1 4.2241 -9.0553 0.9376 40 1 5.4333 -9.6024 -1.1238 41 1 4.0658 -9.0349 -2.1127 42 1 3.9684 -11.3471 -0.1219 43 1 4.0676 -11.5144 -1.8912 44 1 2.0468 -12.6765 -0.4500 45 1 2.4265 -12.4246 -3.0032 46 1 -0.6024 -12.4849 -2.6138 47 1 0.3376 -11.1674 -3.3574 48 1 1.0858 -12.6872 -5.1485 49 1 -0.6926 -12.6670 -5.0709 50 1 2.2610 -14.6234 -4.2692 51 1 1.3031 -15.9551 -3.5777 52 1 2.4044 -14.5789 -1.8081 53 1 0.6288 -14.5160 -1.6904 54 1 0.6064 -9.7209 -0.1241 55 1 1.8538 -10.4259 0.9339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881476065.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:15 Heat of formation + Delta-G solvation = -135.269008 kcal Electronic energy + Delta-G solvation = -29593.291730 eV Core-core repulsion = 25627.608340 eV Total energy + Delta-G solvation = -3965.683390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.38725 -40.45524 -38.91730 -36.73425 -36.60988 -34.64853 -33.80737 -32.65670 -32.09435 -31.57341 -29.60543 -27.64660 -26.22774 -24.99101 -24.69635 -23.86588 -23.27926 -21.88829 -21.48297 -21.14069 -19.82634 -18.43734 -18.06433 -17.53729 -17.07056 -16.95237 -16.80075 -16.46421 -16.28409 -16.21565 -15.76963 -15.57710 -15.40720 -14.95541 -14.55896 -14.48437 -14.39614 -14.23378 -14.15487 -13.63957 -13.58625 -13.42426 -13.31143 -13.13562 -12.80233 -12.78453 -12.41737 -12.37043 -12.26279 -12.16802 -12.13864 -12.05311 -11.85669 -11.73576 -11.56747 -11.38289 -11.32676 -11.30953 -11.13615 -10.74966 -10.59572 -10.54097 -9.76745 -9.34228 -8.18010 -6.30568 1.40542 1.44782 1.52647 1.60647 1.93268 2.42407 2.90803 3.09149 3.14455 3.54214 3.66306 3.80307 3.82613 3.88679 3.96609 4.02086 4.03025 4.11357 4.12691 4.20996 4.27063 4.27358 4.44283 4.48313 4.53707 4.60405 4.65238 4.66947 4.68789 4.75432 4.78283 4.82150 4.84311 4.85487 4.89292 4.91419 5.04273 5.07742 5.09248 5.12979 5.17631 5.27182 5.32429 5.33282 5.36596 5.53355 5.56905 5.77801 5.87961 6.01124 6.22950 6.25286 6.36630 6.45765 6.87677 7.17860 7.39023 8.94011 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.001682 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.053873 B =16642.294239 C =17282.515835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.125 4.125 13 C 0.509 3.491 14 O -0.590 6.590 15 N -0.611 5.611 16 C 0.096 3.904 17 C -0.128 4.128 18 C -0.140 4.140 19 C 0.086 3.914 20 H 0.060 0.940 21 N -0.685 5.685 22 C 0.093 3.907 23 C -0.145 4.145 24 C 0.062 3.938 25 O -0.405 6.405 26 C 0.058 3.942 27 C -0.150 4.150 28 C 0.124 3.876 29 H 0.263 0.737 30 H -0.017 1.017 31 H -0.016 1.016 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.354 0.646 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.060 0.940 51 H 0.108 0.892 52 H 0.094 0.906 53 H 0.070 0.930 54 H 0.059 0.941 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -34.255 -4.936 37.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.164 4.164 13 C 0.299 3.701 14 O -0.471 6.471 15 N -0.344 5.344 16 C -0.025 4.025 17 C -0.167 4.167 18 C -0.179 4.179 19 C -0.025 4.025 20 H 0.079 0.921 21 N -0.317 5.317 22 C -0.017 4.017 23 C -0.183 4.183 24 C -0.015 4.015 25 O -0.324 6.324 26 C -0.019 4.019 27 C -0.188 4.188 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.174 0.826 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.115 0.885 50 H 0.079 0.921 51 H 0.126 0.874 52 H 0.113 0.887 53 H 0.089 0.911 54 H 0.078 0.922 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.436 -34.048 -5.018 36.594 hybrid contribution 0.473 1.130 0.003 1.225 sum 12.909 -32.918 -5.015 35.713 Atomic orbital electron populations 1.70132 1.08105 1.27801 1.51778 1.26111 0.95789 1.03792 0.94761 0.85420 0.78146 0.77612 0.79360 1.18885 1.21130 1.18849 1.21730 0.93786 0.92168 1.50397 0.91442 1.19060 0.94717 0.93884 0.94256 1.21441 0.97784 0.92553 1.01394 1.21252 0.97501 0.93787 1.00860 1.21689 0.98916 0.89448 1.06375 1.21278 0.87586 0.86686 0.74573 1.90688 1.16569 1.87997 1.51811 1.48215 1.08298 1.04987 1.72908 1.22109 0.77151 1.03080 1.00158 1.21862 1.01942 0.94858 0.98028 1.22206 0.94334 0.98030 1.03341 1.21753 0.93211 0.89858 0.97674 0.92131 1.60306 1.59055 1.03465 1.08862 1.21474 0.96589 0.93980 0.89619 1.22205 0.99166 1.00062 0.96889 1.22633 1.02916 0.80348 0.95633 1.87924 1.42781 1.22581 1.79116 1.22735 0.87859 0.99718 0.91609 1.22336 1.03970 0.93785 0.98738 1.21408 0.96716 0.83019 0.98830 0.92882 0.99828 0.99781 0.91913 0.91978 0.94116 0.94027 0.86324 0.86486 0.88004 0.89301 0.87956 0.92342 0.90014 0.90906 0.82593 0.92994 0.91984 0.92097 0.92271 0.88472 0.92144 0.87376 0.88730 0.91127 0.92188 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.09 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.57 4.50 30.59 0.14 -3.43 16 12 C -0.12 -3.20 4.05 29.85 0.12 -3.08 16 13 C 0.51 14.75 7.70 87.66 0.67 15.43 16 14 O -0.59 -23.49 15.40 -3.04 -0.05 -23.54 16 15 N -0.61 -12.42 2.97 -818.86 -2.43 -14.85 16 16 C 0.10 1.09 6.34 86.35 0.55 1.64 16 17 C -0.13 -1.08 6.08 30.66 0.19 -0.90 16 18 C -0.14 -1.16 5.12 30.62 0.16 -1.00 16 19 C 0.09 1.23 2.43 45.01 0.11 1.34 16 20 H 0.06 1.14 7.16 -2.39 -0.02 1.12 16 21 N -0.69 -8.72 6.06 -468.39 -2.84 -11.57 16 22 C 0.09 1.10 2.38 45.03 0.11 1.21 16 23 C -0.14 -2.29 5.62 30.68 0.17 -2.12 16 24 C 0.06 0.87 6.84 72.02 0.49 1.37 16 25 O -0.40 -6.61 10.77 -148.98 -1.60 -8.22 16 26 C 0.06 0.57 6.84 72.01 0.49 1.06 16 27 C -0.15 -1.35 5.41 30.68 0.17 -1.18 16 28 C 0.12 2.45 6.05 86.38 0.52 2.97 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.12 2.39 7.94 -2.39 -0.02 2.37 16 37 H 0.12 2.38 7.69 -2.39 -0.02 2.36 16 38 H 0.10 0.98 5.93 -2.39 -0.01 0.97 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.07 0.51 7.42 -2.39 -0.02 0.49 16 44 H 0.35 3.17 8.12 -89.69 -0.73 2.44 16 45 H 0.05 0.57 7.12 -2.38 -0.02 0.55 16 46 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 47 H 0.06 1.09 7.49 -2.39 -0.02 1.07 16 48 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.11 0.76 8.14 -2.38 -0.02 0.75 16 52 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 53 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 54 H 0.06 1.67 7.00 -2.39 -0.02 1.66 16 55 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.94 421.80 0.39 -78.55 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.11 Total: 12.60 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.89 Total: -20.69 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -4.99 Total: -85.66 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.65 Total: -31.75 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -78.94 0.39 -78.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881476065.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.714 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds