Wall clock time and date at job start Tue Mar 31 2020 21:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48498 * 109.47065 * 270.00051 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00058 * 3 2 1 6 6 H 1.48505 * 109.46756 * 150.00145 * 3 2 1 7 7 C 1.37877 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46918 * 184.97321 * 9 7 2 11 11 C 1.46898 * 111.00069 * 62.22582 * 10 9 7 12 12 C 1.53003 * 109.46885 * 66.04984 * 11 10 9 13 13 N 1.46898 * 109.46885 * 179.97438 * 12 11 10 14 14 C 1.47018 * 110.99888 * 293.63282 * 13 12 11 15 15 C 1.53102 * 109.25761 * 177.60678 * 14 13 12 16 16 O 1.43024 * 109.25585 * 56.85158 * 15 14 13 17 17 C 1.43016 * 113.73655 * 301.32551 * 16 15 14 18 18 C 1.47012 * 111.00171 * 169.99917 * 13 12 11 19 19 C 1.46902 * 110.99777 * 298.27023 * 10 9 7 20 20 C 1.52996 * 109.47609 * 287.86516 * 19 10 9 21 21 H 1.08994 * 109.86888 * 57.40856 * 20 19 10 22 22 C 1.54099 * 109.87947 * 178.41884 * 20 19 10 23 23 C 1.54817 * 104.18789 * 121.45325 * 22 20 19 24 24 C 1.55004 * 102.09181 * 20.87966 * 23 22 20 25 25 H 1.08997 * 110.61504 * 81.47486 * 24 23 22 26 26 C 1.52994 * 110.61741 * 204.32044 * 24 23 22 27 27 C 1.53004 * 117.49826 * 248.74821 * 26 24 23 28 28 C 1.53001 * 117.50042 * 180.08894 * 26 24 23 29 29 O 1.43749 * 109.87672 * 296.25008 * 20 19 10 30 30 H 0.97000 * 120.00124 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47535 * 64.97660 * 9 7 2 32 32 H 1.08997 * 109.47405 * 304.96701 * 9 7 2 33 33 H 1.08996 * 109.47270 * 306.04349 * 11 10 9 34 34 H 1.09001 * 109.46760 * 186.04541 * 11 10 9 35 35 H 1.08997 * 109.47242 * 59.99913 * 12 11 10 36 36 H 1.08992 * 109.46798 * 299.99413 * 12 11 10 37 37 H 1.09000 * 109.50612 * 297.54238 * 14 13 12 38 38 H 1.09000 * 109.50772 * 57.67412 * 14 13 12 39 39 H 1.08997 * 109.50733 * 296.91490 * 15 14 13 40 40 H 1.09002 * 109.54312 * 176.79955 * 15 14 13 41 41 H 1.09003 * 109.50848 * 298.74034 * 17 16 15 42 42 H 1.08997 * 109.54227 * 178.62989 * 17 16 15 43 43 H 1.09003 * 109.50521 * 302.32789 * 18 13 12 44 44 H 1.09002 * 109.50932 * 62.45482 * 18 13 12 45 45 H 1.09006 * 109.47137 * 47.86726 * 19 10 9 46 46 H 1.09002 * 109.47015 * 167.85754 * 19 10 9 47 47 H 1.08992 * 110.48833 * 240.12583 * 22 20 19 48 48 H 1.09000 * 110.49115 * 2.64562 * 22 20 19 49 49 H 1.09001 * 110.90792 * 139.07749 * 23 22 20 50 50 H 1.08998 * 110.90641 * 262.64810 * 23 22 20 51 51 H 1.09001 * 115.55473 * 34.41449 * 26 24 23 52 52 H 1.08996 * 117.49596 * 359.97438 * 27 26 24 53 53 H 1.09003 * 117.50094 * 145.02337 * 27 26 24 54 54 H 1.08999 * 117.49963 * 214.98169 * 28 26 24 55 55 H 1.09001 * 117.49780 * 359.97067 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2010 -3.6132 0.1180 11 6 2.9350 -3.5449 1.3886 12 6 1.9647 -3.7676 2.5506 13 7 2.6988 -3.7000 3.8212 14 6 3.6438 -4.8195 3.9439 15 6 4.4279 -4.6775 5.2512 16 8 3.5109 -4.6204 6.3473 17 6 2.5763 -3.5414 6.2604 18 6 1.7736 -3.6718 4.9633 19 6 3.1256 -3.6414 -1.0232 20 6 2.3784 -4.1092 -2.2737 21 1 1.5303 -3.4522 -2.4659 22 6 3.3304 -4.1045 -3.4854 23 6 3.3140 -5.5691 -3.9867 24 6 1.9893 -6.1035 -3.3847 25 1 1.1410 -5.8109 -4.0035 26 6 2.0426 -7.6247 -3.2307 27 6 1.1366 -8.4589 -4.1387 28 6 0.8094 -8.3196 -2.6498 29 8 1.9226 -5.4606 -2.0937 30 1 -0.4850 0.8400 0.0004 31 1 0.6932 -2.5959 -0.9331 32 1 0.5589 -2.5199 0.8401 33 1 3.4008 -2.5645 1.4870 34 1 3.7049 -4.3163 1.4053 35 1 1.4990 -4.7482 2.4522 36 1 1.1949 -2.9963 2.5339 37 1 3.0942 -5.7608 3.9495 38 1 4.3354 -4.8061 3.1015 39 1 5.0193 -3.7624 5.2234 40 1 5.0895 -5.5349 5.3746 41 1 3.1139 -2.5931 6.2619 42 1 1.8983 -3.5767 7.1132 43 1 1.0999 -2.8206 4.8650 44 1 1.1941 -4.5948 4.9852 45 1 3.5255 -2.6414 -1.1917 46 1 3.9444 -4.3289 -0.8106 47 1 2.9596 -3.4323 -4.2592 48 1 4.3358 -3.8150 -3.1797 49 1 3.2896 -5.6073 -5.0757 50 1 4.1692 -6.1226 -3.5989 51 1 3.0190 -8.0378 -2.9775 52 1 0.5024 -7.9238 -4.8454 53 1 1.5168 -9.4209 -4.4825 54 1 0.9746 -9.1899 -2.0147 55 1 -0.0396 -7.6929 -2.3769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886030038.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:32 Heat of formation + Delta-G solvation = -73.066537 kcal Electronic energy + Delta-G solvation = -31026.514616 eV Core-core repulsion = 27063.528528 eV Total energy + Delta-G solvation = -3962.986088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -40.77779 -40.49639 -38.73875 -37.48112 -36.49181 -34.52200 -32.98826 -32.21630 -31.68942 -30.18198 -28.73369 -27.06772 -25.91264 -24.96409 -24.50884 -23.26755 -22.93741 -21.71937 -21.41000 -21.27936 -21.14458 -18.49021 -17.81673 -17.42893 -17.11222 -17.04831 -16.76156 -16.39433 -16.30616 -15.99326 -15.78881 -15.67559 -15.50585 -15.27121 -14.79480 -14.41982 -14.36881 -14.18453 -13.99323 -13.46118 -13.24989 -13.09464 -12.89764 -12.81388 -12.64481 -12.50250 -12.40572 -12.36956 -12.36265 -12.30618 -12.07328 -12.00995 -11.89693 -11.81768 -11.53919 -11.43209 -11.28339 -11.15013 -10.90495 -10.65540 -10.59100 -10.40539 -9.38937 -8.93269 -8.11454 -6.30683 1.35908 1.37491 1.47251 2.38219 2.61542 2.66978 2.95156 3.12780 3.29173 3.47405 3.64145 3.75810 3.89322 3.95015 4.00090 4.03397 4.04456 4.12904 4.17125 4.19360 4.26655 4.33354 4.35985 4.41953 4.46437 4.55042 4.58284 4.66802 4.68217 4.73591 4.77932 4.80836 4.81881 4.89046 4.91136 4.93438 4.99367 5.02097 5.04530 5.10350 5.15579 5.20047 5.26842 5.28038 5.30406 5.34556 5.38894 5.77198 5.92425 6.00775 6.07736 6.16511 6.19139 6.35016 6.58640 6.89942 7.39914 8.89935 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006905 B = 0.003946 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4054.103681 B = 7093.375016 C =10151.481260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.206 3.794 10 N -0.537 5.537 11 C 0.080 3.920 12 C 0.082 3.918 13 N -0.546 5.546 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.401 6.401 17 C 0.069 3.931 18 C 0.017 3.983 19 C 0.071 3.929 20 C 0.089 3.911 21 H 0.034 0.966 22 C -0.147 4.147 23 C -0.131 4.131 24 C 0.090 3.910 25 H 0.057 0.943 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.183 4.183 29 O -0.371 6.371 30 H 0.263 0.737 31 H -0.002 1.002 32 H 0.006 0.994 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.115 0.885 52 H 0.097 0.903 53 H 0.118 0.882 54 H 0.102 0.898 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -14.112 -1.117 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.080 3.920 10 N -0.261 5.261 11 C -0.049 4.049 12 C -0.046 4.046 13 N -0.271 5.271 14 C -0.111 4.111 15 C -0.011 4.011 16 O -0.319 6.319 17 C -0.007 4.007 18 C -0.111 4.111 19 C -0.058 4.058 20 C 0.030 3.970 21 H 0.052 0.948 22 C -0.185 4.185 23 C -0.168 4.168 24 C 0.033 3.967 25 H 0.075 0.925 26 C -0.172 4.172 27 C -0.190 4.190 28 C -0.221 4.221 29 O -0.291 6.291 30 H 0.072 0.928 31 H 0.016 0.984 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.104 0.896 51 H 0.133 0.867 52 H 0.115 0.885 53 H 0.136 0.864 54 H 0.121 0.879 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.409 -14.231 -0.753 16.547 hybrid contribution -0.384 1.738 -0.420 1.828 sum 8.025 -12.494 -1.173 14.896 Atomic orbital electron populations 1.70073 1.07542 1.27606 1.51420 1.25719 0.95450 1.02486 0.94692 0.85667 0.78795 0.79577 0.78346 1.19856 1.20968 1.19287 1.21891 0.93210 0.92736 1.50649 0.92526 1.19357 0.91376 0.86477 0.94821 1.62350 1.17649 1.44534 1.01526 1.21733 0.95052 0.99365 0.88702 1.21765 0.95614 0.98971 0.88297 1.62132 1.18858 1.44265 1.01888 1.22886 0.96336 0.91672 1.00248 1.22791 0.91000 1.03379 0.83891 1.87926 1.47032 1.51467 1.45519 1.22723 0.91487 0.90049 0.96476 1.22808 0.95275 1.01352 0.91649 1.22110 0.94204 0.99031 0.90443 1.22578 0.95491 0.83869 0.95025 0.94775 1.22952 1.00537 0.98405 0.96633 1.23065 0.97501 0.94204 1.02044 1.22803 0.97285 0.91726 0.84871 0.92548 1.22204 0.96641 0.91396 1.06950 1.23076 1.01719 1.01631 0.92621 1.22861 0.99069 1.02800 0.97322 1.89018 1.86893 1.23621 1.29582 0.92814 0.98425 0.97616 0.95473 0.91090 0.95374 0.93029 0.94535 0.89030 0.92185 0.86096 0.92255 0.86302 0.90206 0.94422 0.93956 0.90704 0.90396 0.89475 0.88336 0.89605 0.86668 0.88490 0.86383 0.87921 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -30.01 7.33 25.60 0.19 -29.82 16 8 H 0.06 3.06 5.96 -2.91 -0.02 3.04 16 9 C 0.21 10.98 4.77 85.56 0.41 11.39 16 10 N -0.54 -23.78 4.61 -900.79 -4.15 -27.93 16 11 C 0.08 3.20 4.70 86.30 0.41 3.61 16 12 C 0.08 3.17 4.88 86.30 0.42 3.59 16 13 N -0.55 -17.91 4.73 -895.20 -4.23 -22.14 16 14 C 0.02 0.45 5.44 86.31 0.47 0.91 16 15 C 0.07 1.50 7.01 72.02 0.50 2.01 16 16 O -0.40 -10.35 10.83 -148.98 -1.61 -11.96 16 17 C 0.07 1.67 7.01 72.02 0.50 2.18 16 18 C 0.02 0.51 5.64 86.32 0.49 0.99 16 19 C 0.07 2.74 4.27 86.30 0.37 3.11 16 20 C 0.09 3.24 3.44 30.96 0.11 3.34 16 21 H 0.03 1.50 6.67 -2.39 -0.02 1.48 16 22 C -0.15 -3.94 6.64 31.59 0.21 -3.73 16 23 C -0.13 -2.84 6.59 31.90 0.21 -2.63 16 24 C 0.09 2.43 3.49 31.28 0.11 2.54 16 25 H 0.06 1.55 7.99 -2.39 -0.02 1.54 16 26 C -0.15 -3.42 5.48 -10.79 -0.06 -3.48 16 27 C -0.15 -2.68 10.19 30.62 0.31 -2.37 16 28 C -0.18 -4.15 10.25 30.62 0.31 -3.83 16 29 O -0.37 -13.50 10.83 -148.98 -1.61 -15.11 16 30 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.00 -0.13 6.61 -2.39 -0.02 -0.15 16 32 H 0.01 0.34 6.37 -2.39 -0.02 0.32 16 33 H 0.03 1.22 6.54 -2.39 -0.02 1.20 16 34 H 0.07 2.49 6.23 -2.39 -0.01 2.47 16 35 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.05 2.35 6.40 -2.39 -0.02 2.34 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 2.36 6.38 -2.39 -0.02 2.34 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 43 H 0.08 2.40 8.09 -2.39 -0.02 2.38 16 44 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.04 1.78 6.20 -2.38 -0.01 1.76 16 46 H 0.07 2.58 7.81 -2.39 -0.02 2.57 16 47 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.09 2.14 7.70 -2.39 -0.02 2.12 16 49 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.69 7.96 -2.39 -0.02 1.67 16 51 H 0.12 2.33 8.01 -2.39 -0.02 2.31 16 52 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 53 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 54 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 55 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -66.68 416.75 -3.03 -69.71 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.84 Total: 27.36 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.42 Total: -10.84 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -8.10 Total: -105.16 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -3.23 Total: -27.08 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.68 -3.03 -69.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030038.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.358 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds