Wall clock time and date at job start Tue Mar 31 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.43728 * 2 1 4 4 C 1.54103 * 110.48620 * 237.31072 * 2 1 3 5 5 O 1.43742 * 107.29148 * 239.29542 * 4 2 1 6 6 C 1.44473 * 106.99052 * 26.51679 * 5 4 2 7 7 H 1.09002 * 110.61975 * 78.41888 * 6 5 4 8 8 C 1.52995 * 110.65925 * 201.45091 * 6 5 4 9 9 C 1.50703 * 109.47054 * 289.03941 * 8 6 5 10 10 O 1.21283 * 119.99831 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99941 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99949 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45942 * 324.96691 * 12 11 9 14 14 C 1.53037 * 109.46035 * 84.92931 * 12 11 9 15 15 C 1.53195 * 109.31024 * 181.38572 * 14 12 11 16 16 N 1.46920 * 108.77741 * 305.36634 * 15 14 12 17 17 C 1.36939 * 120.63225 * 233.63527 * 16 15 14 18 18 H 1.07997 * 120.00211 * 152.61257 * 17 16 15 19 19 C 1.38817 * 119.99837 * 332.60497 * 17 16 15 20 20 N 1.31618 * 120.00257 * 159.35542 * 19 17 16 21 21 Si 1.86805 * 119.99846 * 339.36127 * 19 17 16 22 22 H 1.48495 * 109.47198 * 92.89891 * 21 19 17 23 23 H 1.48499 * 109.46950 * 212.90311 * 21 19 17 24 24 H 1.48503 * 109.47100 * 332.89731 * 21 19 17 25 25 C 1.46927 * 118.73949 * 53.60727 * 16 15 14 26 26 C 1.53042 * 109.46021 * 205.00104 * 12 11 9 27 27 C 1.53000 * 109.49650 * 298.56179 * 26 12 11 28 28 C 1.53002 * 109.49943 * 58.66097 * 26 12 11 29 29 C 1.54809 * 110.48767 * 122.54579 * 2 1 3 30 30 H 1.09003 * 109.46983 * 297.45510 * 1 2 3 31 31 H 1.09000 * 109.47234 * 57.45122 * 1 2 3 32 32 H 1.08996 * 109.47607 * 177.45282 * 1 2 3 33 33 H 1.09001 * 109.46988 * 182.54531 * 3 2 1 34 34 H 1.08996 * 109.47402 * 302.54378 * 3 2 1 35 35 H 1.09005 * 109.47046 * 62.54844 * 3 2 1 36 36 H 1.08997 * 109.87637 * 358.72020 * 4 2 1 37 37 H 1.09003 * 109.87703 * 119.87086 * 4 2 1 38 38 H 1.09002 * 109.47246 * 49.03540 * 8 6 5 39 39 H 1.08994 * 109.47019 * 169.03673 * 8 6 5 40 40 H 0.97002 * 120.00395 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.49998 * 301.33798 * 14 12 11 42 42 H 1.08997 * 109.49510 * 61.43969 * 14 12 11 43 43 H 1.09003 * 109.58351 * 185.57841 * 15 14 12 44 44 H 1.08998 * 109.70405 * 65.22377 * 15 14 12 45 45 H 0.96994 * 120.00020 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58599 * 186.60685 * 25 16 15 47 47 H 1.08996 * 109.70274 * 66.25183 * 25 16 15 48 48 H 1.09003 * 109.46796 * 59.99935 * 27 26 12 49 49 H 1.09003 * 109.47174 * 179.97438 * 27 26 12 50 50 H 1.08993 * 109.47463 * 300.00657 * 27 26 12 51 51 H 1.09000 * 109.47360 * 60.00183 * 28 26 12 52 52 H 1.08999 * 109.46936 * 180.02562 * 28 26 12 53 53 H 1.09002 * 109.46738 * 300.00260 * 28 26 12 54 54 H 1.08992 * 110.91029 * 215.99178 * 29 2 1 55 55 H 1.09003 * 110.90485 * 339.56545 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0693 -0.7796 -1.2149 5 8 2.8753 -1.8565 -0.7080 6 6 2.3779 -2.1713 0.6113 7 1 1.4694 -2.7702 0.5462 8 6 3.4458 -2.8972 1.4319 9 6 3.6349 -4.2906 0.8898 10 8 2.9796 -4.6662 -0.0591 11 7 4.5315 -5.1196 1.4602 12 6 4.7149 -6.4743 0.9336 13 1 3.7576 -6.8607 0.5838 14 6 5.7064 -6.4385 -0.2316 15 6 5.8693 -7.8511 -0.8018 16 7 6.2510 -8.7598 0.2877 17 6 7.3650 -9.5489 0.1801 18 1 7.8931 -9.8618 1.0687 19 6 7.8155 -9.9467 -1.0712 20 7 9.0617 -10.3401 -1.2276 21 14 6.6529 -9.9236 -2.5332 22 1 6.7770 -8.6256 -3.2438 23 1 7.0009 -11.0306 -3.4599 24 1 5.2566 -10.0963 -2.0581 25 6 5.4152 -8.8053 1.4952 26 6 5.2575 -7.3822 2.0397 27 6 6.6178 -6.8606 2.5071 28 6 4.2811 -7.3914 3.2177 29 6 2.0718 -0.7802 1.2224 30 1 -0.3633 0.4738 0.9119 31 1 -0.3634 0.5529 -0.8662 32 1 -0.3634 -1.0266 -0.0457 33 1 3.1532 1.4156 -0.0456 34 1 1.6731 1.9672 -0.8663 35 1 1.7472 1.9396 0.9120 36 1 1.2391 -1.1801 -1.7966 37 1 2.6773 -0.1225 -1.8368 38 1 4.3871 -2.3513 1.3671 39 1 3.1287 -2.9523 2.4732 40 1 5.0553 -4.8193 2.2193 41 1 5.3304 -5.7735 -1.0090 42 1 6.6712 -6.0759 0.1228 43 1 6.6469 -7.8493 -1.5656 44 1 4.9275 -8.1813 -1.2400 45 1 9.3763 -10.6185 -2.1019 46 1 5.8933 -9.4333 2.2470 47 1 4.4350 -9.2129 1.2485 48 1 6.5055 -5.8469 2.8917 49 1 7.0036 -7.5072 3.2952 50 1 7.3130 -6.8556 1.6677 51 1 3.3128 -7.7646 2.8841 52 1 4.6683 -8.0378 4.0054 53 1 4.1670 -6.3782 3.6029 54 1 2.9797 -0.3167 1.6084 55 1 1.3141 -0.8561 2.0023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940886472.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:57 Heat of formation + Delta-G solvation = -96.822347 kcal Electronic energy + Delta-G solvation = -31414.476143 eV Core-core repulsion = 27450.459925 eV Total energy + Delta-G solvation = -3964.016218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.52327 -40.79947 -39.47615 -36.46300 -35.50930 -34.49345 -33.69291 -33.29749 -31.76575 -28.57065 -28.22316 -28.13961 -27.87901 -26.87934 -26.31265 -23.95000 -22.93545 -22.47205 -21.25171 -20.34442 -19.65390 -18.84739 -18.10262 -17.54364 -17.22147 -16.74328 -16.39302 -16.20200 -15.99580 -15.72484 -15.52929 -15.32047 -14.94977 -14.79582 -14.59380 -14.41051 -14.30166 -14.12136 -13.99149 -13.88902 -13.55618 -13.34658 -13.03739 -12.89302 -12.75970 -12.66640 -12.65573 -12.46001 -12.44685 -12.26305 -12.19331 -12.01815 -11.85508 -11.68798 -11.57421 -11.56441 -11.47923 -11.40622 -11.22612 -10.83426 -10.64657 -10.53982 -9.94095 -8.94593 -8.17979 -5.47877 1.26484 1.36611 1.44848 1.76009 2.24638 2.38831 2.95279 3.02808 3.31819 3.45887 3.64030 3.71180 3.85974 3.88057 3.90934 4.01789 4.03458 4.21903 4.22917 4.32223 4.36987 4.44298 4.48118 4.53789 4.60436 4.64594 4.72989 4.76388 4.78491 4.79933 4.80982 4.87416 4.88625 4.90963 4.93160 5.01592 5.03156 5.03985 5.10926 5.15088 5.17678 5.22315 5.23434 5.29064 5.31222 5.42921 5.43541 5.59217 5.67889 5.86421 6.03718 6.12695 6.67662 6.89190 7.39380 7.60709 8.02969 9.01634 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002644 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.874265 B =10586.590210 C =11455.775893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C -0.133 4.133 4 C 0.045 3.955 5 O -0.398 6.398 6 C 0.087 3.913 7 H 0.056 0.944 8 C -0.128 4.128 9 C 0.506 3.494 10 O -0.583 6.583 11 N -0.710 5.710 12 C 0.175 3.825 13 H 0.059 0.941 14 C -0.132 4.132 15 C 0.127 3.873 16 N -0.612 5.612 17 C -0.234 4.234 18 H 0.063 0.937 19 C -0.030 4.030 20 N -0.952 5.952 21 Si 0.933 3.067 22 H -0.285 1.285 23 H -0.309 1.309 24 H -0.268 1.268 25 C 0.154 3.846 26 C -0.078 4.078 27 C -0.127 4.127 28 C -0.129 4.129 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.413 0.587 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.039 0.961 51 H 0.049 0.951 52 H 0.068 0.932 53 H 0.076 0.924 54 H 0.093 0.907 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.771 25.273 12.203 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.031 4.031 5 O -0.318 6.318 6 C 0.029 3.971 7 H 0.074 0.926 8 C -0.167 4.167 9 C 0.294 3.706 10 O -0.462 6.462 11 N -0.362 5.362 12 C 0.070 3.930 13 H 0.078 0.922 14 C -0.173 4.173 15 C 0.001 3.999 16 N -0.336 5.336 17 C -0.364 4.364 18 H 0.081 0.919 19 C -0.225 4.225 20 N -0.599 5.599 21 Si 0.764 3.236 22 H -0.212 1.212 23 H -0.238 1.238 24 H -0.193 1.193 25 C 0.028 3.972 26 C -0.081 4.081 27 C -0.185 4.185 28 C -0.186 4.186 29 C -0.170 4.170 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.087 0.913 53 H 0.095 0.905 54 H 0.112 0.888 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.963 24.835 11.346 32.144 hybrid contribution 0.039 -0.607 -1.374 1.502 sum -16.924 24.228 9.972 31.191 Atomic orbital electron populations 1.21876 0.92834 1.01717 1.03062 1.21945 0.96921 0.96852 0.94124 1.21816 1.00827 0.93466 1.02908 1.23448 0.94697 0.88384 0.96603 1.88965 1.56669 1.53536 1.32584 1.22940 0.95622 0.96075 0.82455 0.92595 1.21836 1.02238 0.90560 1.02096 1.21300 0.78628 0.88157 0.82552 1.90716 1.48531 1.77661 1.29331 1.46046 1.41339 1.13436 1.35409 1.20545 0.97074 0.82450 0.92976 0.92236 1.22270 1.00194 0.96483 0.98316 1.21232 0.97126 0.90228 0.91309 1.44433 1.28354 1.44145 1.16660 1.18864 1.00666 1.23760 0.93115 0.91883 1.25762 0.97115 0.99738 0.99866 1.69929 1.15415 1.50534 1.24028 0.86123 0.80922 0.75854 0.80728 1.21243 1.23815 1.19263 1.21193 0.93243 0.94848 0.87876 1.21187 0.96913 0.95052 0.94898 1.21738 0.95306 1.00761 1.00661 1.21743 0.97559 1.03082 0.96251 1.23311 1.03079 0.92978 0.97615 0.90662 0.91950 0.93441 0.92562 0.92037 0.90912 0.93455 0.89711 0.86488 0.83606 0.74891 0.93262 0.91088 0.93335 0.96267 0.93057 0.91443 0.95605 0.90811 0.92528 0.94161 0.93229 0.91320 0.90537 0.88841 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.25 71.98 0.59 -0.88 16 2 C -0.10 -1.23 0.99 -51.19 -0.05 -1.28 16 3 C -0.13 -1.24 8.27 71.98 0.60 -0.64 16 4 C 0.05 0.88 7.04 72.36 0.51 1.39 16 5 O -0.40 -10.47 10.90 -145.48 -1.59 -12.05 16 6 C 0.09 1.67 2.77 31.28 0.09 1.75 16 7 H 0.06 1.29 7.89 -2.39 -0.02 1.27 16 8 C -0.13 -2.02 5.46 29.85 0.16 -1.86 16 9 C 0.51 13.17 7.74 87.66 0.68 13.85 16 10 O -0.58 -21.61 15.33 0.47 0.01 -21.60 16 11 N -0.71 -16.64 4.29 -442.40 -1.90 -18.54 16 12 C 0.17 5.49 1.57 45.02 0.07 5.56 16 13 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 14 C -0.13 -5.06 5.31 30.67 0.16 -4.90 16 15 C 0.13 5.86 4.21 86.36 0.36 6.22 16 16 N -0.61 -28.98 2.21 -699.11 -1.54 -30.52 16 17 C -0.23 -13.20 10.04 84.03 0.84 -12.36 16 18 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 19 C -0.03 -1.78 5.23 84.86 0.44 -1.34 16 20 N -0.95 -60.42 13.97 21.65 0.30 -60.11 16 21 Si 0.93 49.06 24.34 68.60 1.67 50.73 16 22 H -0.28 -14.64 6.62 99.48 0.66 -13.98 16 23 H -0.31 -16.37 7.11 99.48 0.71 -15.67 16 24 H -0.27 -13.77 6.64 99.48 0.66 -13.11 16 25 C 0.15 5.80 5.19 86.36 0.45 6.25 16 26 C -0.08 -2.25 0.56 -52.10 -0.03 -2.28 16 27 C -0.13 -3.50 7.83 71.98 0.56 -2.94 16 28 C -0.13 -2.70 8.31 71.98 0.60 -2.11 16 29 C -0.13 -1.50 5.69 31.90 0.18 -1.32 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.05 0.97 7.69 -2.39 -0.02 0.95 16 37 H 0.08 1.50 7.70 -2.39 -0.02 1.48 16 38 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.41 6.75 6.66 -92.71 -0.62 6.13 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.68 6.34 -2.39 -0.02 2.67 16 43 H 0.05 2.47 4.49 -2.39 -0.01 2.46 16 44 H 0.02 0.92 7.07 -2.39 -0.02 0.90 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.45 6.58 -2.39 -0.02 1.43 16 49 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 50 H 0.04 1.42 5.97 -2.39 -0.01 1.40 16 51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.08 1.22 7.36 -2.39 -0.02 1.20 16 54 H 0.09 0.84 7.79 -2.39 -0.02 0.82 16 55 H 0.10 0.76 7.86 -2.39 -0.02 0.74 16 Total: -1.00 -77.46 406.96 3.32 -74.14 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.14 Total: 14.82 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.22 Total: 3.14 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -3.14 Total: -109.17 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.58 Total: -33.65 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.67 Total: 50.73 kcal Total: -77.46 3.32 -74.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940886472.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.683 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds