Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 119.99871 * 2 1 4 4 O 1.21281 * 119.99953 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00154 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46975 * 180.02562 * 5 3 2 7 7 H 1.09002 * 110.27796 * 55.64030 * 6 5 3 8 8 C 1.54950 * 110.30739 * 177.83275 * 6 5 3 9 9 C 1.55311 * 100.93907 * 155.36161 * 8 6 5 10 10 C 1.53004 * 110.84470 * 207.67748 * 9 8 6 11 11 C 1.52998 * 110.84803 * 84.05824 * 9 8 6 12 12 C 1.54383 * 102.25282 * 325.86544 * 9 8 6 13 13 O 1.43236 * 107.58674 * 21.35932 * 12 9 8 14 14 C 1.46501 * 119.99738 * 179.97438 * 2 1 3 15 15 H 1.08999 * 109.50388 * 180.02562 * 14 2 1 16 16 C 1.52571 * 109.49209 * 60.00396 * 14 2 1 17 17 C 1.47087 * 114.20967 * 154.94270 * 16 14 2 18 18 C 1.54869 * 110.32439 * 62.87975 * 17 16 14 19 19 N 1.44580 * 109.59728 * 288.73185 * 18 17 16 20 20 C 1.36937 * 118.64411 * 270.70857 * 19 18 17 21 21 H 1.08001 * 120.00449 * 139.22275 * 20 19 18 22 22 C 1.38818 * 119.99599 * 319.21471 * 20 19 18 23 23 N 1.31623 * 119.99395 * 156.28294 * 22 20 19 24 24 Si 1.86798 * 120.00259 * 336.28768 * 22 20 19 25 25 H 1.48493 * 109.46913 * 95.52965 * 24 22 20 26 26 H 1.48504 * 109.46758 * 215.52943 * 24 22 20 27 27 H 1.48500 * 109.46850 * 335.52872 * 24 22 20 28 28 C 1.47605 * 122.71370 * 90.72632 * 19 18 17 29 29 C 1.51038 * 109.42628 * 300.25348 * 14 2 1 30 30 H 1.09000 * 109.47523 * 270.00066 * 1 2 3 31 31 H 1.08997 * 109.47019 * 30.00274 * 1 2 3 32 32 H 1.09003 * 109.47069 * 150.00387 * 1 2 3 33 33 H 1.09001 * 109.46902 * 300.00223 * 5 3 2 34 34 H 1.08996 * 109.47047 * 60.00346 * 5 3 2 35 35 H 1.09003 * 111.12580 * 273.27686 * 8 6 5 36 36 H 1.08993 * 111.12718 * 37.44269 * 8 6 5 37 37 H 1.08999 * 109.47036 * 174.28758 * 10 9 8 38 38 H 1.09003 * 109.47066 * 294.28198 * 10 9 8 39 39 H 1.08994 * 109.47201 * 54.28593 * 10 9 8 40 40 H 1.08997 * 109.47306 * 305.70958 * 11 9 8 41 41 H 1.09004 * 109.47167 * 65.71433 * 11 9 8 42 42 H 1.09002 * 109.47280 * 185.71255 * 11 9 8 43 43 H 1.08993 * 109.83010 * 261.84569 * 12 9 8 44 44 H 1.08997 * 109.82517 * 140.87399 * 12 9 8 45 45 H 1.08999 * 108.51192 * 33.76335 * 16 14 2 46 46 H 1.08999 * 108.50560 * 276.11595 * 16 14 2 47 47 H 1.08998 * 109.33047 * 183.13605 * 17 16 14 48 48 H 1.08999 * 109.32795 * 302.61726 * 17 16 14 49 49 H 1.08994 * 109.44957 * 48.77061 * 18 17 16 50 50 H 1.08996 * 109.44794 * 168.72507 * 18 17 16 51 51 H 0.97001 * 119.99322 * 180.02562 * 23 22 20 52 52 H 1.08997 * 108.94764 * 78.55185 * 28 19 18 53 53 H 1.08992 * 108.94870 * 197.18643 * 28 19 18 54 54 H 1.09000 * 109.43972 * 91.78084 * 29 14 2 55 55 H 1.08994 * 109.41443 * 332.09041 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6351 -0.0011 7 1 3.0637 3.5469 -0.8451 8 6 1.6254 4.9875 -0.0567 9 6 2.6737 5.9363 0.5859 10 6 1.9891 7.1252 1.2634 11 6 3.6887 6.4115 -0.4556 12 6 3.3467 5.0211 1.6313 13 8 3.1127 3.6650 1.2338 14 6 2.1975 -1.2688 0.0006 15 1 3.2692 -1.0703 0.0009 16 6 1.8293 -2.0697 -1.2447 17 6 2.8582 -3.0311 -1.6696 18 6 3.0767 -4.1042 -0.5745 19 7 3.7528 -3.5111 0.5576 20 6 5.1220 -3.5095 0.5774 21 1 5.6561 -2.6381 0.9264 22 6 5.8235 -4.6282 0.1491 23 7 7.0626 -4.5044 -0.2774 24 14 5.0092 -6.3091 0.1780 25 1 4.4393 -6.6060 -1.1607 26 1 6.0178 -7.3417 0.5269 27 1 3.9232 -6.3156 1.1909 28 6 3.0280 -2.9075 1.6930 29 6 1.8271 -2.0621 1.2313 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 0.7590 2.5298 -0.8908 34 1 0.7584 2.5302 0.8891 35 1 1.4126 5.2767 -1.0859 36 1 0.7116 4.9524 0.5365 37 1 2.7338 7.7204 1.7918 38 1 1.5004 7.7414 0.5086 39 1 1.2456 6.7608 1.9721 40 1 4.1341 5.5478 -0.9494 41 1 3.1856 7.0338 -1.1958 42 1 4.4696 6.9915 0.0362 43 1 2.9102 5.1989 2.6140 44 1 4.4183 5.2183 1.6601 45 1 1.6475 -1.3731 -2.0631 46 1 0.9071 -2.6154 -1.0449 47 1 2.5394 -3.5167 -2.5918 48 1 3.7943 -2.5022 -1.8483 49 1 2.1121 -4.4987 -0.2553 50 1 3.6852 -4.9142 -0.9764 51 1 7.5526 -5.2860 -0.5771 52 1 2.6704 -3.7024 2.3474 53 1 3.7138 -2.2719 2.2530 54 1 0.9893 -2.7199 1.0003 55 1 1.5381 -1.3785 2.0296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948613370.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = -85.495153 kcal Electronic energy + Delta-G solvation = -31521.964779 eV Core-core repulsion = 27558.439745 eV Total energy + Delta-G solvation = -3963.525034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.48219 -40.66822 -39.25859 -36.81641 -35.48636 -34.73327 -33.56720 -33.43208 -32.29700 -28.71274 -28.27631 -27.97214 -27.41656 -26.89519 -25.88497 -24.88949 -22.63709 -21.60076 -21.14405 -20.38819 -19.76723 -18.65564 -18.02765 -17.74033 -17.49410 -16.83823 -16.60873 -16.45891 -16.14284 -15.66435 -15.34085 -15.18429 -14.89445 -14.73977 -14.68932 -14.38506 -14.19257 -14.12630 -13.95514 -13.74105 -13.67154 -13.46573 -13.14503 -13.04918 -12.88083 -12.77830 -12.74127 -12.51666 -12.39948 -12.29543 -12.23193 -11.98693 -11.75346 -11.70152 -11.65197 -11.49257 -11.43937 -11.39689 -11.38370 -10.62018 -10.61092 -10.44144 -9.53367 -8.68309 -8.21823 -5.61779 1.29912 1.40090 1.53526 1.76196 2.09206 2.41564 2.89913 3.02508 3.37496 3.38177 3.59873 3.73864 3.82776 3.86407 4.01148 4.02981 4.17705 4.25943 4.28963 4.33212 4.33786 4.39423 4.42728 4.52456 4.59678 4.63115 4.70940 4.72234 4.75343 4.77102 4.79823 4.81815 4.89132 4.92374 4.98667 4.99861 5.01958 5.03262 5.08283 5.12869 5.14281 5.17757 5.19603 5.31017 5.35835 5.41327 5.43593 5.54513 5.75310 5.96694 6.16568 6.18678 6.55979 7.05518 7.35576 7.67291 8.01995 8.99046 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.002677 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.787134 B =10455.452464 C =11186.717786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.614 5.614 3 C 0.495 3.505 4 O -0.590 6.590 5 C -0.125 4.125 6 C 0.088 3.912 7 H 0.045 0.955 8 C -0.129 4.129 9 C -0.097 4.097 10 C -0.130 4.130 11 C -0.140 4.140 12 C 0.047 3.953 13 O -0.403 6.403 14 C 0.151 3.849 15 H 0.048 0.952 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.140 3.860 19 N -0.611 5.611 20 C -0.265 4.265 21 H 0.015 0.985 22 C -0.021 4.021 23 N -0.952 5.952 24 Si 0.955 3.045 25 H -0.267 1.267 26 H -0.307 1.307 27 H -0.255 1.255 28 C 0.147 3.853 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.019 0.981 49 H 0.073 0.927 50 H 0.029 0.971 51 H 0.264 0.736 52 H 0.036 0.964 53 H 0.025 0.975 54 H 0.091 0.909 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.428 20.664 -0.821 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.346 5.346 3 C 0.285 3.715 4 O -0.470 6.470 5 C -0.164 4.164 6 C 0.031 3.969 7 H 0.063 0.937 8 C -0.166 4.166 9 C -0.097 4.097 10 C -0.187 4.187 11 C -0.197 4.197 12 C -0.030 4.030 13 O -0.323 6.323 14 C 0.047 3.953 15 H 0.067 0.933 16 C -0.138 4.138 17 C -0.175 4.175 18 C 0.015 3.985 19 N -0.335 5.335 20 C -0.395 4.395 21 H 0.033 0.967 22 C -0.218 4.218 23 N -0.595 5.595 24 Si 0.782 3.218 25 H -0.194 1.194 26 H -0.235 1.235 27 H -0.179 1.179 28 C 0.022 3.978 29 C -0.161 4.161 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.091 0.909 50 H 0.047 0.953 51 H 0.072 0.928 52 H 0.054 0.946 53 H 0.043 0.957 54 H 0.110 0.890 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.658 20.423 -0.734 31.262 hybrid contribution 1.382 -0.834 -0.020 1.615 sum -22.275 19.588 -0.754 29.672 Atomic orbital electron populations 1.22104 0.76750 1.05100 1.03312 1.48214 1.08633 1.04839 1.72936 1.21516 0.87816 0.87009 0.75175 1.90766 1.17105 1.87922 1.51175 1.21961 0.98355 0.88825 1.07279 1.22784 0.91994 0.95357 0.86801 0.93663 1.23416 0.98317 0.91255 1.03625 1.22122 0.95844 0.96354 0.95378 1.21716 1.00312 0.95953 1.00685 1.21844 0.98573 1.00782 0.98521 1.23443 0.99685 0.81304 0.98534 1.88556 1.76677 1.26584 1.40459 1.20290 0.96231 0.83097 0.95707 0.93317 1.20557 0.99292 0.97431 0.96485 1.21241 0.98207 0.98542 0.99496 1.21248 0.95914 0.93945 0.87413 1.43932 1.01741 1.69357 1.18498 1.18564 0.82498 0.96714 1.41752 0.96697 1.26238 0.95604 1.01920 0.98005 1.70074 1.13835 1.30888 1.44729 0.85665 0.77819 0.79361 0.78913 1.19397 1.23528 1.17908 1.21282 0.92853 0.94772 0.88890 1.22080 0.98306 0.98436 0.97311 0.91250 0.88372 0.89675 0.84005 0.86081 0.87858 0.87975 0.92121 0.90688 0.91611 0.94401 0.90310 0.92039 0.90504 0.93030 0.92295 0.89267 0.90251 0.96175 0.90856 0.95250 0.92760 0.94556 0.95673 0.89048 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 9.59 127.77 1.23 2.18 16 2 N -0.61 -16.68 2.60 -826.99 -2.15 -18.83 16 3 C 0.50 15.85 7.58 87.66 0.66 16.52 16 4 O -0.59 -27.39 14.86 8.30 0.12 -27.27 16 5 C -0.12 -2.41 4.00 29.85 0.12 -2.29 16 6 C 0.09 2.05 2.62 31.26 0.08 2.13 16 7 H 0.05 1.30 7.61 -2.39 -0.02 1.28 16 8 C -0.13 -1.69 5.53 32.05 0.18 -1.51 16 9 C -0.10 -1.43 0.95 -50.92 -0.05 -1.47 16 10 C -0.13 -1.22 8.51 71.98 0.61 -0.61 16 11 C -0.14 -2.12 8.46 71.98 0.61 -1.51 16 12 C 0.05 1.03 6.99 72.45 0.51 1.54 16 13 O -0.40 -12.37 10.41 -137.64 -1.43 -13.81 16 14 C 0.15 5.26 2.14 44.21 0.09 5.35 16 15 H 0.05 2.42 6.24 -2.39 -0.01 2.40 16 16 C -0.10 -3.05 3.96 28.61 0.11 -2.93 16 17 C -0.13 -5.18 5.73 29.39 0.17 -5.01 16 18 C 0.14 5.99 4.52 87.38 0.39 6.39 16 19 N -0.61 -30.45 1.79 -698.37 -1.25 -31.70 16 20 C -0.27 -16.42 9.66 84.03 0.81 -15.61 16 21 H 0.02 1.09 8.06 -2.91 -0.02 1.07 16 22 C -0.02 -1.33 5.22 84.86 0.44 -0.88 16 23 N -0.95 -63.33 13.97 21.65 0.30 -63.03 16 24 Si 0.96 47.90 25.29 68.60 1.73 49.64 16 25 H -0.27 -12.51 6.70 99.48 0.67 -11.84 16 26 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 27 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.15 6.18 6.24 86.49 0.54 6.72 16 29 C -0.12 -3.85 4.87 30.28 0.15 -3.70 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.76 6.44 -2.39 -0.02 0.74 16 32 H 0.08 1.01 7.00 -2.39 -0.02 1.00 16 33 H 0.14 1.53 7.40 -2.39 -0.02 1.52 16 34 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 35 H 0.10 0.97 8.04 -2.39 -0.02 0.95 16 36 H 0.10 0.93 7.94 -2.39 -0.02 0.91 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.55 8.12 -2.39 -0.02 0.54 16 40 H 0.04 0.75 7.50 -2.39 -0.02 0.73 16 41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.47 7.81 -2.39 -0.02 1.45 16 44 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 45 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 46 H 0.09 2.07 6.94 -2.39 -0.02 2.06 16 47 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.07 2.57 8.06 -2.39 -0.02 2.55 16 50 H 0.03 1.39 3.59 -2.39 -0.01 1.38 16 51 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 52 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.02 1.18 7.89 -2.39 -0.02 1.16 16 54 H 0.09 2.27 7.31 -2.39 -0.02 2.26 16 55 H 0.08 2.18 7.99 -2.39 -0.02 2.16 16 Total: -1.00 -89.63 407.77 4.79 -84.84 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.80 Total: 14.85 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.66 Total: 5.30 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.09 Total: -113.55 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.31 Total: -41.08 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.73 Total: 49.64 kcal Total: -89.63 4.79 -84.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948613370.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.658 kcal (2) G-P(sol) polarization free energy of solvation -89.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds