Wall clock time and date at job start Tue Mar 31 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00561 * 2 1 4 4 O 1.21275 * 120.00475 * 179.72476 * 3 2 1 5 5 C 1.50699 * 119.99555 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47185 * 179.72879 * 5 3 2 7 7 H 1.09004 * 110.54873 * 305.69733 * 6 5 3 8 8 C 1.54997 * 110.62076 * 182.82301 * 6 5 3 9 9 C 1.54990 * 102.01211 * 204.59234 * 8 6 5 10 10 C 1.52998 * 110.34226 * 262.02320 * 9 8 6 11 11 C 1.53000 * 110.68388 * 139.47420 * 9 8 6 12 12 C 1.54101 * 104.24969 * 20.66328 * 9 8 6 13 13 O 1.43741 * 107.29716 * 2.16746 * 12 9 8 14 14 C 1.46502 * 119.99645 * 179.97438 * 2 1 3 15 15 C 1.53000 * 109.47039 * 120.81988 * 14 2 1 16 16 C 1.53000 * 109.47080 * 300.00219 * 15 14 2 17 17 C 1.53003 * 109.46963 * 299.99802 * 16 15 14 18 18 N 1.46495 * 109.46935 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00509 * 85.00051 * 18 17 16 20 20 H 1.08000 * 119.99374 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00425 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47558 * 119.99402 * 23 21 19 26 26 H 1.48502 * 109.47289 * 240.00272 * 23 21 19 27 27 C 1.53000 * 109.47061 * 60.00186 * 17 16 15 28 28 C 1.52994 * 109.47295 * 0.82045 * 14 2 1 29 29 H 1.09000 * 109.46835 * 84.07407 * 1 2 3 30 30 H 1.08994 * 109.47474 * 204.08431 * 1 2 3 31 31 H 1.09003 * 109.46752 * 324.08402 * 1 2 3 32 32 H 1.09004 * 109.47188 * 299.72363 * 5 3 2 33 33 H 1.09004 * 109.47514 * 59.72557 * 5 3 2 34 34 H 1.08999 * 110.90314 * 322.67084 * 8 6 5 35 35 H 1.09002 * 110.90514 * 86.27156 * 8 6 5 36 36 H 1.08994 * 109.47001 * 176.21397 * 10 9 8 37 37 H 1.09002 * 109.47509 * 296.21780 * 10 9 8 38 38 H 1.09009 * 109.46843 * 56.21607 * 10 9 8 39 39 H 1.09002 * 109.47171 * 303.58515 * 11 9 8 40 40 H 1.08997 * 109.46921 * 63.58299 * 11 9 8 41 41 H 1.08992 * 109.47026 * 183.58289 * 11 9 8 42 42 H 1.09001 * 109.88146 * 242.73674 * 12 9 8 43 43 H 1.09005 * 109.99776 * 121.65699 * 12 9 8 44 44 H 1.09001 * 109.47043 * 240.81979 * 14 2 1 45 45 H 1.09007 * 109.47232 * 59.99690 * 15 14 2 46 46 H 1.08998 * 109.47484 * 179.97438 * 15 14 2 47 47 H 1.08999 * 109.47221 * 179.97438 * 16 15 14 48 48 H 1.08999 * 109.47020 * 59.99954 * 16 15 14 49 49 H 1.08998 * 109.46857 * 299.99942 * 17 16 15 50 50 H 0.97008 * 119.99542 * 265.00086 * 18 17 16 51 51 H 0.97000 * 119.99817 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.47190 * 180.02562 * 27 17 16 53 53 H 1.08999 * 109.47231 * 59.99659 * 27 17 16 54 54 H 1.08999 * 109.47446 * 179.97438 * 28 14 2 55 55 H 1.08999 * 109.47150 * 299.99703 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0050 5 6 1.3855 2.4723 -0.0006 6 6 2.3798 3.6352 0.0064 7 1 3.0773 3.5372 0.8382 8 6 1.6329 4.9915 0.0774 9 6 2.6637 5.9608 -0.5551 10 6 3.4514 6.6864 0.5375 11 6 1.9663 6.9694 -1.4702 12 6 3.5943 5.0442 -1.3727 13 8 3.0910 3.7036 -1.2482 14 6 2.1974 -1.2688 0.0006 15 6 3.0924 -1.3415 -1.2382 16 6 2.2284 -1.2519 -2.4977 17 6 1.2342 -2.4148 -2.5178 18 7 0.4072 -2.3294 -3.7240 19 6 0.8564 -2.8651 -4.9015 20 1 1.8201 -3.3509 -4.9408 21 6 0.0726 -2.7846 -6.0443 22 7 -1.1026 -2.1938 -5.9960 23 14 0.6849 -3.5159 -7.6504 24 1 2.0254 -4.1195 -7.4401 25 1 -0.2627 -4.5623 -8.1110 26 1 0.7794 -2.4470 -8.6769 27 6 0.3392 -2.3421 -1.2790 28 6 1.2033 -2.4316 -0.0196 29 1 -0.3633 0.1061 -1.0222 30 1 -0.3634 -0.9381 0.4193 31 1 -0.3633 0.8323 0.6029 32 1 0.7629 2.5320 -0.8933 33 1 0.7548 2.5282 0.8867 34 1 0.7162 4.9619 -0.5116 35 1 1.4210 5.2652 1.1110 36 1 4.2164 7.3128 0.0787 37 1 2.7737 7.3093 1.1213 38 1 3.9254 5.9539 1.1910 39 1 1.3949 6.4361 -2.2300 40 1 1.2937 7.5913 -0.8796 41 1 2.7135 7.5992 -1.9529 42 1 4.6085 5.0976 -0.9768 43 1 3.5891 5.3463 -2.4200 44 1 2.8130 -1.3325 0.8979 45 1 3.8007 -0.5130 -1.2239 46 1 3.6378 -2.2853 -1.2376 47 1 2.8660 -1.3033 -3.3802 48 1 1.6834 -0.3079 -2.4980 49 1 1.7792 -3.3587 -2.5174 50 1 -0.4586 -1.8933 -3.6886 51 1 -1.6502 -2.1372 -6.7947 52 1 -0.3688 -3.1707 -1.2931 53 1 -0.2058 -1.3980 -1.2794 54 1 1.7482 -3.3756 -0.0196 55 1 0.5657 -2.3798 0.8630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963670546.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:49 Heat of formation + Delta-G solvation = -89.802474 kcal Electronic energy + Delta-G solvation = -31537.079785 eV Core-core repulsion = 27573.367972 eV Total energy + Delta-G solvation = -3963.711813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.71600 -40.77474 -39.05897 -36.55483 -35.51869 -34.88153 -33.41850 -32.47468 -31.98384 -29.75697 -28.33952 -28.16595 -27.27011 -26.76408 -25.44278 -23.61480 -23.15866 -22.05776 -21.07294 -20.36803 -19.64222 -19.10242 -17.92441 -17.47786 -17.19442 -16.78896 -16.47017 -16.37842 -16.09948 -15.66947 -15.29913 -15.25080 -14.89765 -14.74727 -14.49024 -14.32830 -14.21493 -13.97171 -13.80756 -13.59972 -13.48676 -13.13691 -13.03657 -12.95659 -12.85796 -12.79958 -12.69993 -12.57927 -12.44848 -12.24990 -12.12283 -12.06008 -11.90629 -11.66788 -11.58588 -11.49059 -11.38693 -11.30769 -11.06979 -10.88338 -10.54474 -10.39928 -9.47198 -8.98085 -7.95164 -5.21922 1.43823 1.44883 1.54398 1.75687 2.13067 2.54653 2.95152 3.37471 3.44181 3.54436 3.74935 3.79067 3.87193 3.89642 3.96983 4.03055 4.19439 4.28744 4.32181 4.36463 4.38182 4.41133 4.44239 4.54700 4.59190 4.61579 4.66441 4.66960 4.73363 4.77520 4.77879 4.79898 4.86413 4.87100 4.94648 5.02227 5.02957 5.06707 5.13747 5.14923 5.21277 5.23374 5.27330 5.30153 5.31285 5.42909 5.47585 5.55453 5.64410 5.78415 6.05307 6.28759 6.53624 7.32479 7.34211 8.12045 8.35547 9.28406 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.002938 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.061311 B = 9526.498091 C =10922.148436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.605 5.605 3 C 0.506 3.494 4 O -0.574 6.574 5 C -0.131 4.131 6 C 0.089 3.911 7 H 0.063 0.937 8 C -0.133 4.133 9 C -0.097 4.097 10 C -0.135 4.135 11 C -0.134 4.134 12 C 0.045 3.955 13 O -0.399 6.399 14 C 0.157 3.843 15 C -0.127 4.127 16 C -0.110 4.110 17 C 0.176 3.824 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.066 0.934 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.966 3.034 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.295 1.295 27 C -0.142 4.142 28 C -0.109 4.109 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.018 0.982 48 H 0.035 0.965 49 H 0.032 0.968 50 H 0.373 0.627 51 H 0.250 0.750 52 H 0.062 0.938 53 H 0.091 0.909 54 H 0.084 0.916 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 15.853 21.256 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.338 5.338 3 C 0.295 3.705 4 O -0.453 6.453 5 C -0.171 4.171 6 C 0.032 3.968 7 H 0.081 0.919 8 C -0.171 4.171 9 C -0.098 4.098 10 C -0.192 4.192 11 C -0.192 4.192 12 C -0.032 4.032 13 O -0.319 6.319 14 C 0.054 3.946 15 C -0.166 4.166 16 C -0.150 4.150 17 C 0.068 3.932 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.084 0.916 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.796 3.204 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.222 1.222 27 C -0.179 4.179 28 C -0.147 4.147 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.205 0.795 51 H 0.059 0.941 52 H 0.080 0.920 53 H 0.109 0.891 54 H 0.103 0.897 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.084 15.546 20.990 26.301 hybrid contribution 0.325 -0.225 -1.677 1.723 sum 3.409 15.322 19.312 24.886 Atomic orbital electron populations 1.22390 0.78284 1.05584 1.01860 1.47975 1.07869 1.05252 1.72710 1.21048 0.87815 0.86303 0.75326 1.90646 1.15809 1.87863 1.51008 1.21876 0.98621 0.89911 1.06643 1.22920 0.92388 0.94687 0.86820 0.91946 1.23345 0.98308 0.92162 1.03269 1.21972 0.95460 0.95942 0.96385 1.21857 1.00062 1.00034 0.97278 1.21822 1.00471 0.98100 0.98758 1.23454 0.97031 0.81855 1.00837 1.88987 1.73175 1.30169 1.39541 1.20958 0.93233 0.83494 0.96959 1.21850 0.98250 1.01852 0.94664 1.21888 0.97773 0.99497 0.95872 1.20411 0.91470 0.94758 0.86540 1.42603 1.20278 1.68686 1.05887 1.19584 1.00814 1.27877 0.88494 0.91572 1.25465 0.97275 1.02915 1.01062 1.69801 1.12461 1.50727 1.28788 0.85169 0.77622 0.77400 0.80201 1.19594 1.21622 1.22219 1.22355 0.98313 1.03973 0.93265 1.21762 0.97531 0.97349 0.98049 0.93189 0.87980 0.88559 0.88122 0.83798 0.89633 0.87656 0.91968 0.90566 0.93011 0.93139 0.90762 0.91946 0.92938 0.90328 0.90433 0.92702 0.91057 0.96280 0.94566 0.94966 0.79519 0.94068 0.91976 0.89085 0.89706 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 8.01 127.77 1.02 2.11 16 2 N -0.61 -15.01 2.25 -822.61 -1.85 -16.86 16 3 C 0.51 14.36 7.30 87.66 0.64 15.00 16 4 O -0.57 -21.18 13.67 4.76 0.07 -21.12 16 5 C -0.13 -2.66 4.10 29.85 0.12 -2.54 16 6 C 0.09 1.99 2.77 31.28 0.09 2.08 16 7 H 0.06 1.50 7.96 -2.38 -0.02 1.48 16 8 C -0.13 -1.96 5.71 31.96 0.18 -1.78 16 9 C -0.10 -1.50 0.99 -51.13 -0.05 -1.56 16 10 C -0.14 -1.63 8.25 71.98 0.59 -1.04 16 11 C -0.13 -1.76 8.28 71.98 0.60 -1.16 16 12 C 0.05 1.02 7.03 72.35 0.51 1.53 16 13 O -0.40 -12.14 10.75 -141.21 -1.52 -13.66 16 14 C 0.16 4.12 2.94 44.99 0.13 4.25 16 15 C -0.13 -4.30 5.23 30.59 0.16 -4.14 16 16 C -0.11 -4.48 5.34 30.60 0.16 -4.32 16 17 C 0.18 7.17 2.77 44.99 0.12 7.30 16 18 N -0.74 -38.00 5.12 -322.95 -1.65 -39.65 16 19 C -0.24 -13.59 9.93 84.03 0.83 -12.76 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 23 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 27 C -0.14 -4.22 4.73 30.60 0.14 -4.07 16 28 C -0.11 -2.42 4.91 30.59 0.15 -2.27 16 29 H 0.05 1.12 6.70 -2.39 -0.02 1.11 16 30 H 0.10 1.53 4.95 -2.39 -0.01 1.51 16 31 H 0.10 1.07 6.68 -2.39 -0.02 1.05 16 32 H 0.10 2.11 8.11 -2.38 -0.02 2.09 16 33 H 0.14 1.64 7.40 -2.38 -0.02 1.63 16 34 H 0.09 1.19 7.79 -2.39 -0.02 1.17 16 35 H 0.11 1.03 7.87 -2.39 -0.02 1.01 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.05 1.18 7.69 -2.39 -0.02 1.16 16 43 H 0.08 1.75 7.70 -2.38 -0.02 1.73 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 45 H 0.05 2.13 6.12 -2.38 -0.01 2.12 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16 49 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 50 H 0.37 20.29 7.80 -92.70 -0.72 19.57 16 51 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 52 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.09 2.59 3.66 -2.39 -0.01 2.58 16 54 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 55 H 0.10 1.60 6.89 -2.39 -0.02 1.59 16 Total: -1.00 -77.58 408.24 3.37 -74.21 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.14 Total: 34.22 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.88 Total: -7.32 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.22 Total: -116.09 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.45 Total: -34.77 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -77.58 3.37 -74.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963670546.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.593 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds