Wall clock time and date at job start Tue Mar 31 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 C 1.54908 * 111.00481 * 123.90045 * 2 1 3 5 5 N 1.47425 * 104.92961 * 81.01010 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.08005 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47595 * 59.99628 * 10 8 6 12 12 H 1.48504 * 109.46820 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46978 * 299.99208 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.09002 * 110.72180 * 219.45147 * 15 14 5 17 17 N 1.46496 * 110.87283 * 96.25220 * 15 14 5 18 18 C 1.34782 * 120.00326 * 91.38814 * 17 15 14 19 19 O 1.21281 * 119.99454 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00475 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47360 * 180.02562 * 20 18 17 22 22 H 1.08999 * 109.47892 * 55.01518 * 21 20 18 23 23 C 1.53094 * 109.48149 * 175.05628 * 21 20 18 24 24 C 1.53171 * 109.16238 * 177.59248 * 23 21 20 25 25 C 1.53180 * 109.03373 * 303.01726 * 24 23 21 26 26 C 1.53001 * 109.52250 * 297.07373 * 25 24 23 27 27 C 1.53003 * 109.57452 * 176.92115 * 25 24 23 28 28 C 1.53089 * 109.16510 * 56.98471 * 25 24 23 29 29 O 1.42899 * 109.47725 * 294.99833 * 21 20 18 30 30 H 1.09001 * 109.46742 * 297.54757 * 1 2 3 31 31 H 1.08996 * 109.47279 * 57.55485 * 1 2 3 32 32 H 1.09002 * 109.47053 * 177.55228 * 1 2 3 33 33 H 1.09001 * 109.47276 * 182.45167 * 3 2 1 34 34 H 1.09003 * 109.46690 * 302.44706 * 3 2 1 35 35 H 1.08998 * 109.47248 * 62.44868 * 3 2 1 36 36 H 1.09002 * 110.36632 * 199.90406 * 4 2 1 37 37 H 1.08995 * 110.36781 * 322.11643 * 4 2 1 38 38 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 40 40 H 1.08999 * 109.87327 * 118.35916 * 14 5 4 41 41 H 0.97000 * 119.99859 * 271.39321 * 17 15 14 42 42 H 1.09006 * 109.46930 * 299.99891 * 20 18 17 43 43 H 1.08998 * 109.47089 * 59.99579 * 20 18 17 44 44 H 1.09006 * 109.52038 * 297.49456 * 23 21 20 45 45 H 1.08993 * 109.52176 * 57.68263 * 23 21 20 46 46 H 1.08997 * 109.54525 * 183.15051 * 24 23 21 47 47 H 1.09001 * 109.61851 * 62.92695 * 24 23 21 48 48 H 1.09001 * 109.47087 * 179.68744 * 26 25 24 49 49 H 1.09002 * 109.47595 * 299.69123 * 26 25 24 50 50 H 1.08998 * 109.47081 * 59.68864 * 26 25 24 51 51 H 1.09007 * 109.46742 * 300.28321 * 27 25 24 52 52 H 1.09005 * 109.47327 * 60.27710 * 27 25 24 53 53 H 1.08994 * 109.47629 * 180.28345 * 27 25 24 54 54 H 1.09005 * 109.48100 * 182.41207 * 28 25 24 55 55 H 1.08993 * 109.49388 * 62.37763 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0137 -2.2167 0.7761 6 6 1.9448 -3.2991 1.6120 7 1 1.9403 -3.1553 2.6824 8 6 1.8819 -4.5812 1.0836 9 7 1.8879 -4.7564 -0.2208 10 14 1.7872 -6.0577 2.2240 11 1 0.5678 -5.9561 3.0652 12 1 1.7292 -7.3032 1.4173 13 1 2.9890 -6.0876 3.0958 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8079 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4652 -0.4126 -1.4989 18 6 3.9625 -0.5812 -2.7402 19 8 3.2683 -1.0608 -3.6115 20 6 5.3812 -0.1751 -3.0453 21 6 5.6915 -0.4699 -4.5142 22 1 4.9532 0.0219 -5.1475 23 6 7.0886 0.0545 -4.8561 24 6 7.4157 -0.2975 -6.3105 25 6 7.3028 -1.8140 -6.4950 26 6 8.3394 -2.5147 -5.6144 27 6 7.5521 -2.1719 -7.9615 28 6 5.8975 -2.2663 -6.0898 29 8 5.6461 -1.8808 -4.7369 30 1 -0.3633 0.4753 0.9112 31 1 -0.3633 0.5513 -0.8672 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4021 -0.0440 34 1 1.6908 1.9653 -0.8673 35 1 1.7619 1.9383 0.9111 36 1 3.1183 -0.5233 1.4024 37 1 1.4684 -0.6446 2.0842 38 1 1.8436 -5.6523 -0.5901 39 1 1.1219 -2.7480 -1.0599 40 1 2.9064 -2.8116 -1.0400 41 1 4.0205 -0.0295 -0.8019 42 1 5.5026 0.8915 -2.8557 43 1 6.0648 -0.7372 -2.4092 44 1 7.1125 1.1369 -4.7291 45 1 7.8226 -0.4069 -4.1957 46 1 8.4308 0.0236 -6.5440 47 1 6.7126 0.2040 -6.9755 48 1 8.2546 -3.5939 -5.7421 49 1 9.3396 -2.1921 -5.9036 50 1 8.1624 -2.2574 -4.5701 51 1 6.8146 -1.6705 -8.5883 52 1 8.5529 -1.8495 -8.2492 53 1 7.4665 -3.2506 -8.0919 54 1 5.8249 -3.3503 -6.1783 55 1 5.1620 -1.7981 -6.7438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974843497.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:15 Heat of formation + Delta-G solvation = -98.336901 kcal Electronic energy + Delta-G solvation = -31588.223072 eV Core-core repulsion = 27624.141178 eV Total energy + Delta-G solvation = -3964.081894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.38239 -40.70172 -39.27227 -36.25118 -35.63675 -34.45174 -34.04300 -32.59412 -30.92280 -29.50350 -28.18498 -28.03863 -27.40854 -26.90560 -25.59145 -24.65396 -22.74592 -22.05595 -21.21467 -20.07710 -19.79197 -18.67025 -17.92310 -17.44097 -17.34476 -16.65063 -16.54309 -15.95148 -15.78556 -15.61296 -15.54082 -15.28491 -15.08467 -14.83163 -14.49990 -14.02430 -14.00122 -13.70211 -13.50680 -13.43673 -13.15469 -13.04400 -13.00473 -12.96359 -12.85035 -12.75597 -12.71637 -12.63851 -12.56226 -12.43196 -12.16300 -11.93328 -11.83207 -11.75032 -11.70422 -11.49334 -11.35260 -11.28856 -11.09538 -10.81137 -10.65138 -10.17817 -9.88104 -8.88101 -7.82300 -5.19337 1.42862 1.46943 1.53448 1.81216 2.32900 2.49760 2.91443 3.35443 3.52783 3.67968 3.72623 3.80381 3.81139 3.85428 3.99204 4.05861 4.10556 4.17996 4.33138 4.40918 4.42929 4.53553 4.56493 4.64010 4.68451 4.70624 4.75927 4.80668 4.84090 4.86916 4.90014 4.90851 4.95846 4.97292 5.02762 5.07277 5.08163 5.13918 5.16471 5.19024 5.25565 5.30755 5.35265 5.38255 5.41154 5.46295 5.55233 5.58397 5.73788 5.81739 6.18073 6.43100 6.72311 7.08318 7.45230 7.78842 8.43918 9.26583 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.003142 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.426855 B = 8908.907389 C =10584.759501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.087 0.913 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.300 1.300 13 H -0.274 1.274 14 C 0.194 3.806 15 C 0.140 3.860 16 H 0.072 0.928 17 N -0.704 5.704 18 C 0.505 3.495 19 O -0.581 6.581 20 C -0.126 4.126 21 C 0.102 3.898 22 H 0.048 0.952 23 C -0.144 4.144 24 C -0.108 4.108 25 C -0.099 4.099 26 C -0.135 4.135 27 C -0.136 4.136 28 C 0.068 3.932 29 O -0.396 6.396 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.047 0.953 38 H 0.242 0.758 39 H 0.000 1.000 40 H -0.003 1.003 41 H 0.409 0.591 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.072 0.928 53 H 0.054 0.946 54 H 0.078 0.922 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.826 17.326 -9.707 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.179 4.179 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.227 1.227 13 H -0.200 1.200 14 C 0.068 3.932 15 C 0.033 3.967 16 H 0.090 0.910 17 N -0.356 5.356 18 C 0.293 3.707 19 O -0.461 6.461 20 C -0.166 4.166 21 C 0.044 3.956 22 H 0.066 0.934 23 C -0.181 4.181 24 C -0.145 4.145 25 C -0.099 4.099 26 C -0.192 4.192 27 C -0.194 4.194 28 C -0.008 4.008 29 O -0.315 6.315 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.015 0.985 41 H 0.247 0.753 42 H 0.167 0.833 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.073 0.927 54 H 0.096 0.904 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.286 16.644 -10.171 23.053 hybrid contribution -0.287 -1.652 0.441 1.734 sum 11.999 14.992 -9.730 21.527 Atomic orbital electron populations 1.21592 0.93177 1.00732 1.02630 1.21984 0.96449 0.96045 0.93124 1.21637 1.01149 0.92145 1.03004 1.21899 0.97732 0.83277 0.95807 1.44734 1.86601 1.01630 1.01680 1.19444 1.42365 0.85086 0.89738 0.89473 1.25707 1.02981 1.00447 0.97274 1.70252 1.58391 1.20375 1.11266 0.85152 0.78386 0.78318 0.77494 1.20028 1.22696 1.20034 1.21105 0.96704 0.91796 0.83617 1.21948 0.83280 0.94229 0.97242 0.91002 1.45879 1.13907 1.64022 1.11830 1.21299 0.90373 0.77232 0.81796 1.90683 1.62156 1.45396 1.47851 1.21834 0.91685 1.05780 0.97262 1.21898 0.96930 0.81998 0.94768 0.93398 1.22236 0.95501 1.02697 0.97669 1.21657 1.02984 0.93765 0.96135 1.21197 0.94930 0.96817 0.96953 1.21795 0.98303 0.99637 0.99479 1.21770 1.02534 1.01547 0.93519 1.22662 0.95410 0.99775 0.83001 1.88004 1.92002 1.23476 1.28035 0.90539 0.91458 0.95497 0.91502 0.91666 0.90508 0.94980 0.93463 0.94894 0.98213 0.98503 0.75348 0.83349 0.87624 0.88268 0.90448 0.89489 0.91713 0.93566 0.91144 0.93096 0.92381 0.90889 0.92712 0.90370 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.61 71.98 0.62 -3.29 16 2 C -0.07 -2.39 0.83 -50.79 -0.04 -2.43 16 3 C -0.12 -2.63 8.35 71.98 0.60 -2.03 16 4 C 0.14 5.32 6.12 86.85 0.53 5.85 16 5 N -0.62 -32.30 3.39 -691.30 -2.34 -34.64 16 6 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 7 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 8 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 9 N -0.95 -61.81 10.34 21.65 0.22 -61.59 16 10 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 14 C 0.19 10.43 4.75 86.68 0.41 10.84 16 15 C 0.14 5.56 2.59 46.18 0.12 5.68 16 16 H 0.07 3.10 7.45 -2.39 -0.02 3.08 16 17 N -0.70 -23.27 4.42 -436.92 -1.93 -25.20 16 18 C 0.50 17.54 7.71 87.65 0.68 18.21 16 19 O -0.58 -26.28 15.06 10.78 0.16 -26.12 16 20 C -0.13 -2.93 5.41 29.85 0.16 -2.77 16 21 C 0.10 2.53 2.19 30.63 0.07 2.60 16 22 H 0.05 1.31 7.96 -2.39 -0.02 1.29 16 23 C -0.14 -2.32 5.05 30.68 0.16 -2.17 16 24 C -0.11 -1.65 4.81 30.71 0.15 -1.51 16 25 C -0.10 -1.84 0.78 -52.09 -0.04 -1.88 16 26 C -0.13 -2.55 8.08 71.98 0.58 -1.97 16 27 C -0.14 -2.03 8.49 71.98 0.61 -1.42 16 28 C 0.07 1.81 5.54 72.01 0.40 2.21 16 29 O -0.40 -12.95 9.06 -135.17 -1.22 -14.18 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.03 1.05 7.81 -2.39 -0.02 1.03 16 33 H 0.07 1.26 6.26 -2.39 -0.01 1.24 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 37 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 38 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.00 -0.02 7.39 -2.38 -0.02 -0.04 16 40 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 41 H 0.41 10.82 7.05 -92.71 -0.65 10.17 16 42 H 0.15 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.08 1.25 6.62 -2.39 -0.02 1.24 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.05 1.11 6.13 -2.39 -0.01 1.09 16 51 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 55 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -81.75 414.81 3.43 -78.32 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.19 Total: 24.23 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.33 Total: 9.41 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.05 Total: -121.43 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.06 Total: -40.30 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -81.75 3.43 -78.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974843497.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.017 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds