Wall clock time and date at job start Tue Mar 31 2020 21:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 110.91431 * 2 1 4 4 C 1.54910 * 111.00592 * 236.09992 * 2 1 3 5 5 N 1.47425 * 104.83231 * 278.93199 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21280 * 119.99952 * 359.71588 * 6 5 4 8 8 C 1.50705 * 119.99988 * 179.71693 * 6 5 4 9 9 C 1.52997 * 109.46810 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.48275 * 54.98078 * 9 8 6 11 11 C 1.53096 * 109.47853 * 174.99722 * 9 8 6 12 12 C 1.53174 * 109.16540 * 177.59011 * 11 9 8 13 13 C 1.53180 * 109.03884 * 303.02223 * 12 11 9 14 14 C 1.52995 * 109.52395 * 176.88272 * 13 12 11 15 15 C 1.52996 * 109.51985 * 297.07435 * 13 12 11 16 16 C 1.53091 * 109.15872 * 56.97763 * 13 12 11 17 17 O 1.42899 * 109.48264 * 294.94086 * 9 8 6 18 18 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 19 19 C 1.54316 * 107.27365 * 1.05989 * 18 5 4 20 20 H 1.09003 * 110.72277 * 263.65209 * 19 18 5 21 21 N 1.46502 * 110.72235 * 140.55686 * 19 18 5 22 22 C 1.36930 * 120.00089 * 86.45199 * 21 19 18 23 23 H 1.08003 * 120.00345 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00051 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99647 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00024 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47086 * 60.00234 * 26 24 22 28 28 H 1.48496 * 109.47115 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47184 * 300.00455 * 26 24 22 30 30 H 1.09000 * 109.47132 * 296.09507 * 1 2 3 31 31 H 1.08996 * 109.47319 * 56.09649 * 1 2 3 32 32 H 1.09006 * 109.46990 * 176.09929 * 1 2 3 33 33 H 1.08997 * 109.47161 * 183.90056 * 3 2 1 34 34 H 1.08991 * 109.46994 * 303.90151 * 3 2 1 35 35 H 1.08999 * 109.47006 * 63.90339 * 3 2 1 36 36 H 1.09001 * 110.36852 * 160.09498 * 4 2 1 37 37 H 1.08998 * 110.36449 * 37.77146 * 4 2 1 38 38 H 1.08993 * 109.46871 * 299.99760 * 8 6 5 39 39 H 1.09000 * 109.46865 * 59.99842 * 8 6 5 40 40 H 1.09001 * 109.52260 * 297.50314 * 11 9 8 41 41 H 1.09004 * 109.52166 * 57.62467 * 11 9 8 42 42 H 1.09002 * 109.53810 * 62.89011 * 12 11 9 43 43 H 1.08996 * 109.54384 * 183.06321 * 12 11 9 44 44 H 1.08999 * 109.46916 * 60.00117 * 14 13 12 45 45 H 1.08998 * 109.47373 * 179.97438 * 14 13 12 46 46 H 1.09002 * 109.47111 * 300.00263 * 14 13 12 47 47 H 1.08996 * 109.47425 * 59.99968 * 15 13 12 48 48 H 1.09004 * 109.47020 * 179.97438 * 15 13 12 49 49 H 1.08994 * 109.47317 * 299.99951 * 15 13 12 50 50 H 1.09001 * 109.48495 * 62.37926 * 16 13 12 51 51 H 1.09005 * 109.47723 * 182.40842 * 16 13 12 52 52 H 1.09004 * 109.87531 * 120.47707 * 18 5 4 53 53 H 1.09000 * 109.87938 * 241.63960 * 18 5 4 54 54 H 0.96997 * 119.99518 * 266.45032 * 21 19 18 55 55 H 0.97002 * 119.99594 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7734 6 6 1.9516 -3.2830 -1.5941 7 8 1.9460 -3.1238 -2.7964 8 6 1.8889 -4.6741 -1.0179 9 6 1.8246 -5.6950 -2.1557 10 1 2.6671 -5.5412 -2.8300 11 6 1.8867 -7.1104 -1.5757 12 6 1.7613 -8.1266 -2.7149 13 6 0.4571 -7.8666 -3.4752 14 6 0.3579 -8.8255 -4.6632 15 6 -0.7329 -8.0856 -2.5388 16 6 0.4503 -6.4219 -3.9817 17 8 0.6013 -5.5298 -2.8756 18 6 2.0286 -2.2646 0.6960 19 6 2.0862 -0.8079 1.2022 20 1 3.1130 -0.5169 1.4239 21 7 1.2344 -0.6349 2.3815 22 6 1.7297 -0.9042 3.6294 23 1 2.7485 -1.2437 3.7443 24 6 0.9227 -0.7398 4.7469 25 7 -0.3187 -0.3255 4.6068 26 14 1.5983 -1.1078 6.4491 27 1 2.7665 -0.2314 6.7181 28 1 0.5450 -0.8552 7.4649 29 1 2.0203 -2.5299 6.5173 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1636 1.4027 -0.0699 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9300 0.9229 36 1 3.1182 -0.5233 -1.4025 37 1 1.4672 -0.6461 -2.0836 38 1 2.7776 -4.8578 -0.4143 39 1 1.0000 -4.7693 -0.3942 40 1 2.8383 -7.2528 -1.0636 41 1 1.0684 -7.2509 -0.8694 42 1 2.6070 -8.0190 -3.3942 43 1 1.7501 -9.1360 -2.3037 44 1 0.3684 -9.8538 -4.3019 45 1 -0.5706 -8.6400 -5.2033 46 1 1.2049 -8.6661 -5.3305 47 1 -0.6620 -7.3998 -1.6946 48 1 -1.6604 -7.8999 -3.0804 49 1 -0.7240 -9.1127 -2.1742 50 1 1.2747 -6.2777 -4.6802 51 1 -0.4940 -6.2182 -4.4867 52 1 1.1219 -2.7480 1.0599 53 1 2.9065 -2.8115 1.0400 54 1 0.3195 -0.3296 2.2783 55 1 -0.8827 -0.2110 5.3877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996066627.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:35 Heat of formation + Delta-G solvation = -104.266358 kcal Electronic energy + Delta-G solvation = -31272.600672 eV Core-core repulsion = 27308.261658 eV Total energy + Delta-G solvation = -3964.339014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.49169 -40.76083 -39.18717 -36.27232 -35.80396 -34.64358 -34.04533 -32.63744 -30.79572 -29.10312 -28.30627 -28.18841 -27.69360 -26.69509 -25.79056 -24.93213 -22.97452 -22.47775 -20.34018 -19.90151 -19.77326 -19.10814 -17.88784 -17.60149 -17.06699 -16.67960 -16.57870 -16.17472 -15.93280 -15.70154 -15.50728 -15.22683 -14.93736 -14.87654 -14.46784 -14.27569 -14.03373 -13.86993 -13.55990 -13.49173 -13.30330 -13.04618 -12.98597 -12.96854 -12.85994 -12.81519 -12.79019 -12.73151 -12.52111 -12.46820 -12.13402 -12.06357 -11.94889 -11.85681 -11.76458 -11.48085 -11.38016 -11.29473 -11.12355 -10.92482 -10.77028 -10.21455 -9.57364 -9.00838 -7.90503 -5.19356 1.52284 1.53624 1.59569 1.67811 2.04165 2.60037 2.85835 3.36304 3.41512 3.66299 3.71856 3.78913 3.82237 3.83333 3.85617 4.04719 4.12762 4.16450 4.23573 4.32864 4.38800 4.42706 4.46650 4.51399 4.59957 4.63478 4.67267 4.72391 4.77867 4.79453 4.80452 4.85943 4.88343 4.90547 4.95113 5.02057 5.03285 5.05296 5.08600 5.13153 5.17406 5.22736 5.24211 5.30725 5.34048 5.39908 5.42881 5.52874 5.53195 5.58353 6.30697 6.37408 6.59108 7.20505 7.39027 8.12291 8.36461 9.32483 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002779 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.330738 B =10073.646823 C =11413.328994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.614 5.614 6 C 0.525 3.475 7 O -0.575 6.575 8 C -0.128 4.128 9 C 0.110 3.890 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.108 4.108 13 C -0.099 4.099 14 C -0.136 4.136 15 C -0.136 4.136 16 C 0.070 3.930 17 O -0.391 6.391 18 C 0.087 3.913 19 C 0.173 3.827 20 H 0.069 0.931 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.080 0.920 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.968 3.032 27 H -0.279 1.279 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.089 0.911 52 H 0.055 0.945 53 H 0.074 0.926 54 H 0.380 0.620 55 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -13.732 -16.296 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.347 5.347 6 C 0.315 3.685 7 O -0.455 6.455 8 C -0.167 4.167 9 C 0.051 3.949 10 H 0.070 0.930 11 C -0.186 4.186 12 C -0.146 4.146 13 C -0.100 4.100 14 C -0.193 4.193 15 C -0.193 4.193 16 C -0.007 4.007 17 O -0.310 6.310 18 C -0.038 4.038 19 C 0.062 3.938 20 H 0.087 0.913 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.098 0.902 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.228 1.228 29 H -0.203 1.203 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.107 0.893 52 H 0.073 0.927 53 H 0.092 0.908 54 H 0.215 0.785 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.321 -13.615 -16.759 22.239 hybrid contribution -0.291 -0.008 1.126 1.163 sum 5.031 -13.623 -15.634 21.338 Atomic orbital electron populations 1.21556 0.94308 1.00866 1.01488 1.21922 0.95850 0.96266 0.93924 1.21609 1.01202 0.93354 1.01998 1.22282 1.01107 0.79951 0.96819 1.48563 1.72190 1.06431 1.07548 1.20685 0.75213 0.86784 0.85813 1.90649 1.52126 1.86832 1.15907 1.21778 1.06074 0.89829 0.99049 1.21779 0.87278 0.93806 0.91988 0.92990 1.22249 1.03838 0.93427 0.99038 1.21658 0.96543 0.99509 0.96847 1.21200 0.96416 0.95329 0.97034 1.21759 1.02151 0.98886 0.96508 1.21794 0.96800 1.01601 0.99078 1.22692 1.01539 0.88558 0.87920 1.87953 1.39216 1.59165 1.44678 1.22971 1.01277 1.01508 0.78088 1.21397 0.94852 0.91139 0.86370 0.91295 1.42666 1.13298 1.79368 1.01047 1.19604 0.96857 1.35872 0.84726 0.90165 1.25482 0.96403 1.03104 1.01337 1.69803 1.07888 1.54622 1.29555 0.85295 0.76736 0.78188 0.80017 1.20529 1.22841 1.20317 0.93217 0.91290 0.94358 0.91313 0.91041 0.93372 0.90264 0.91359 0.85328 0.88315 0.89151 0.90838 0.91523 0.89952 0.91358 0.92216 0.92258 0.93361 0.92893 0.91690 0.93696 0.89289 0.92700 0.90790 0.78458 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 7.93 71.98 0.57 -3.59 16 2 C -0.08 -2.42 0.87 -50.79 -0.04 -2.46 16 3 C -0.12 -3.35 8.68 71.99 0.62 -2.73 16 4 C 0.12 3.57 5.83 86.86 0.51 4.07 16 5 N -0.61 -19.23 3.31 -811.79 -2.69 -21.92 16 6 C 0.52 16.91 7.73 87.66 0.68 17.59 16 7 O -0.58 -22.04 15.68 10.68 0.17 -21.87 16 8 C -0.13 -3.22 4.60 29.85 0.14 -3.08 16 9 C 0.11 2.62 2.19 30.63 0.07 2.69 16 10 H 0.05 1.34 7.95 -2.38 -0.02 1.32 16 11 C -0.15 -2.58 5.05 30.68 0.15 -2.43 16 12 C -0.11 -1.63 4.81 30.71 0.15 -1.48 16 13 C -0.10 -1.63 0.78 -52.09 -0.04 -1.67 16 14 C -0.14 -1.69 8.49 71.98 0.61 -1.08 16 15 C -0.14 -2.33 8.08 71.98 0.58 -1.75 16 16 C 0.07 1.51 5.54 72.01 0.40 1.91 16 17 O -0.39 -11.04 9.06 -135.27 -1.23 -12.27 16 18 C 0.09 2.86 5.92 86.73 0.51 3.38 16 19 C 0.17 6.22 2.85 46.18 0.13 6.35 16 20 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 21 N -0.72 -33.36 5.08 -317.33 -1.61 -34.97 16 22 C -0.24 -12.24 9.98 84.04 0.84 -11.40 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.97 -56.93 13.06 21.65 0.28 -56.65 16 26 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.05 1.89 6.34 -2.39 -0.02 1.87 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.37 7.91 -2.38 -0.02 1.35 16 33 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 2.10 7.98 -2.39 -0.02 2.08 16 37 H 0.07 2.09 7.95 -2.39 -0.02 2.07 16 38 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.35 6.63 -2.38 -0.02 1.33 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 1.00 6.14 -2.39 -0.01 0.98 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 52 H 0.05 2.02 8.03 -2.38 -0.02 2.00 16 53 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 54 H 0.38 19.08 5.26 -92.71 -0.49 18.59 16 55 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -65.39 418.59 3.65 -61.74 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.35 Total: 38.91 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 6.34 Total: 0.95 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -4.02 Total: -113.54 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.06 Total: -34.14 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.39 3.65 -61.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996066627.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.526 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds