Wall clock time and date at job start Tue Mar 31 2020 22:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.83489 * 2 1 4 4 C 1.55227 * 110.88878 * 236.21320 * 2 1 3 5 5 O 1.44373 * 103.56949 * 278.75143 * 4 2 1 6 6 C 1.43744 * 106.97248 * 320.00875 * 5 4 2 7 7 H 1.09000 * 110.00788 * 267.01666 * 6 5 4 8 8 C 1.53001 * 109.87631 * 145.93853 * 6 5 4 9 9 C 1.53002 * 109.47133 * 67.17059 * 8 6 5 10 10 C 1.50703 * 109.47057 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00166 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99652 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.65236 * 0.02970 * 12 10 9 14 14 C 1.54325 * 107.27391 * 181.01888 * 13 12 10 15 15 H 1.09003 * 110.72070 * 263.65380 * 14 13 12 16 16 N 1.46498 * 110.72117 * 140.55443 * 14 13 12 17 17 C 1.36938 * 119.99810 * 86.45514 * 16 14 13 18 18 H 1.08001 * 120.00268 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00054 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47194 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47147 * 119.99748 * 21 19 17 24 24 H 1.48500 * 109.46639 * 239.99517 * 21 19 17 25 25 C 1.55156 * 102.93801 * 22.19442 * 14 13 12 26 26 C 1.53001 * 111.00681 * 82.57390 * 25 14 13 27 27 C 1.53000 * 111.00235 * 206.38326 * 25 14 13 28 28 C 1.47432 * 125.64556 * 179.71908 * 12 10 9 29 29 C 1.54098 * 107.29564 * 26.51652 * 6 5 4 30 30 H 1.09000 * 109.46548 * 296.35314 * 1 2 3 31 31 H 1.09002 * 109.46908 * 56.34730 * 1 2 3 32 32 H 1.08991 * 109.47487 * 176.35591 * 1 2 3 33 33 H 1.08997 * 109.47590 * 183.65086 * 3 2 1 34 34 H 1.09009 * 109.46928 * 303.64962 * 3 2 1 35 35 H 1.08997 * 109.47389 * 63.64477 * 3 2 1 36 36 H 1.09002 * 110.51777 * 160.25115 * 4 2 1 37 37 H 1.09000 * 110.77540 * 37.37306 * 4 2 1 38 38 H 1.09000 * 109.47236 * 187.16449 * 8 6 5 39 39 H 1.08996 * 109.47315 * 307.16800 * 8 6 5 40 40 H 1.08997 * 109.47068 * 299.99783 * 9 8 6 41 41 H 1.09007 * 109.47226 * 60.00140 * 9 8 6 42 42 H 1.08997 * 109.88278 * 300.43848 * 13 12 10 43 43 H 1.09007 * 109.88251 * 61.44984 * 13 12 10 44 44 H 0.97000 * 120.00134 * 266.45729 * 16 14 13 45 45 H 0.96996 * 119.99943 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.47214 * 59.99540 * 26 25 14 47 47 H 1.08993 * 109.47307 * 179.97438 * 26 25 14 48 48 H 1.09002 * 109.46687 * 299.99877 * 26 25 14 49 49 H 1.09008 * 109.47387 * 60.00279 * 27 25 14 50 50 H 1.09002 * 109.47575 * 180.02562 * 27 25 14 51 51 H 1.08994 * 109.47348 * 300.00118 * 27 25 14 52 52 H 1.08996 * 110.36382 * 274.75124 * 28 12 10 53 53 H 1.08999 * 110.36572 * 37.07312 * 28 12 10 54 54 H 1.09002 * 110.48969 * 116.64488 * 29 6 5 55 55 H 1.09002 * 110.48612 * 239.16155 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0835 -0.8065 -1.2053 5 8 2.0047 -2.1776 -0.7603 6 6 2.3975 -2.1932 0.6224 7 1 3.4653 -2.3962 0.7045 8 6 1.6054 -3.2634 1.3762 9 6 2.0176 -4.6495 0.8766 10 6 1.2378 -5.7037 1.6195 11 8 0.4315 -5.3783 2.4649 12 7 1.4358 -7.0079 1.3436 13 6 2.3772 -7.5398 0.3474 14 6 2.2415 -9.0770 0.3635 15 1 3.0065 -9.5250 0.9978 16 7 2.3157 -9.6182 -0.9958 17 6 3.5332 -9.9058 -1.5527 18 1 4.4387 -9.7341 -0.9897 19 6 3.6035 -10.4182 -2.8409 20 7 2.5000 -10.6279 -3.5269 21 14 5.2643 -10.8112 -3.6003 22 1 6.3411 -10.4882 -2.6302 23 1 5.3228 -12.2550 -3.9429 24 1 5.4492 -10.0024 -4.8319 25 6 0.8278 -9.2946 0.9647 26 6 -0.2526 -9.1532 -0.1094 27 6 0.7310 -10.6540 1.6600 28 6 0.7488 -8.1379 1.9953 29 6 2.0825 -0.8014 1.2039 30 1 -0.3632 0.4562 0.9209 31 1 -0.3633 0.5695 -0.8555 32 1 -0.3634 -1.0255 -0.0653 33 1 3.1619 1.4048 -0.0654 34 1 1.6711 1.9720 -0.8556 35 1 1.7770 1.9318 0.9208 36 1 3.1174 -0.5278 -1.4091 37 1 1.4647 -0.6538 -2.0895 38 1 1.8134 -3.1852 2.4433 39 1 0.5395 -3.1165 1.2021 40 1 1.8096 -4.7278 -0.1905 41 1 3.0836 -4.7964 1.0507 42 1 2.1266 -7.1559 -0.6415 43 1 3.3956 -7.2525 0.6093 44 1 1.5024 -9.7727 -1.5013 45 1 2.5491 -10.9862 -4.4269 46 1 -0.0872 -9.8947 -0.8910 47 1 -1.2335 -9.3110 0.3389 48 1 -0.2067 -8.1535 -0.5414 49 1 1.4644 -10.7036 2.4650 50 1 -0.2702 -10.7810 2.0720 51 1 0.9296 -11.4463 0.9383 52 1 1.2612 -8.4125 2.9173 53 1 -0.2910 -7.8828 2.1997 54 1 1.3303 -0.8773 1.9891 55 1 2.9891 -0.3347 1.5890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996559359.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:53 Heat of formation + Delta-G solvation = -106.285401 kcal Electronic energy + Delta-G solvation = -30726.414002 eV Core-core repulsion = 26761.987435 eV Total energy + Delta-G solvation = -3964.426566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.42753 -40.86125 -39.34554 -35.85959 -35.63221 -34.69564 -34.30975 -32.64596 -30.49316 -29.13218 -28.31831 -28.24783 -27.70875 -26.89008 -25.81968 -24.84076 -22.88126 -21.94221 -20.46804 -20.27675 -19.80967 -19.12810 -18.00782 -17.39754 -17.07668 -16.68285 -16.52628 -16.30974 -16.13923 -15.72908 -15.51944 -15.10426 -15.04246 -14.57194 -14.33107 -14.29813 -14.10356 -13.86426 -13.81579 -13.66888 -13.47407 -13.31963 -13.00478 -12.98570 -12.86156 -12.79417 -12.72891 -12.55521 -12.41296 -12.22817 -12.10926 -12.08664 -12.02664 -11.86013 -11.64398 -11.54941 -11.49925 -11.39953 -11.29812 -10.96493 -10.81379 -10.51674 -9.62260 -9.02305 -7.92134 -5.20937 1.50391 1.51408 1.60093 1.60528 2.01813 2.58708 2.94389 3.33143 3.39822 3.50063 3.67176 3.78332 3.81299 3.84598 3.89832 3.95476 4.10753 4.16362 4.25479 4.31016 4.31590 4.41301 4.42105 4.45307 4.54538 4.65007 4.69162 4.70684 4.74076 4.78687 4.81588 4.84742 4.86585 4.89809 4.91298 5.01786 5.03044 5.05531 5.07451 5.09429 5.16094 5.18515 5.23046 5.28365 5.31595 5.33573 5.42225 5.42993 5.51929 5.57474 6.02534 6.29541 6.53613 7.12658 7.37725 8.10636 8.34735 9.31255 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.002731 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.361601 B =10251.418492 C =12057.690496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.132 4.132 4 C 0.047 3.953 5 O -0.397 6.397 6 C 0.075 3.925 7 H 0.077 0.923 8 C -0.090 4.090 9 C -0.128 4.128 10 C 0.524 3.476 11 O -0.584 6.584 12 N -0.612 5.612 13 C 0.088 3.912 14 C 0.172 3.828 15 H 0.070 0.930 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.297 1.297 24 H -0.298 1.298 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.124 4.124 28 C 0.119 3.881 29 C -0.141 4.141 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.380 0.620 45 H 0.250 0.750 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.037 0.963 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.047 0.953 52 H 0.081 0.919 53 H 0.072 0.928 54 H 0.079 0.921 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 19.870 11.412 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.189 4.189 4 C -0.029 4.029 5 O -0.316 6.316 6 C 0.018 3.982 7 H 0.095 0.905 8 C -0.128 4.128 9 C -0.167 4.167 10 C 0.314 3.686 11 O -0.466 6.466 12 N -0.344 5.344 13 C -0.038 4.038 14 C 0.062 3.938 15 H 0.088 0.912 16 N -0.364 5.364 17 C -0.369 4.369 18 H 0.098 0.902 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.225 1.225 25 C -0.079 4.079 26 C -0.183 4.183 27 C -0.182 4.182 28 C -0.003 4.003 29 C -0.178 4.178 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.216 0.784 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.066 0.934 52 H 0.099 0.901 53 H 0.090 0.910 54 H 0.098 0.902 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.477 19.892 11.714 23.132 hybrid contribution 0.490 -0.456 -1.141 1.323 sum -0.987 19.436 10.573 22.148 Atomic orbital electron populations 1.21763 0.93637 1.01377 1.02500 1.22158 0.96456 0.96659 0.94462 1.21724 1.01122 0.93284 1.02812 1.23859 1.00953 0.80650 0.97470 1.88901 1.89320 1.27690 1.25730 1.22842 0.98345 0.95461 0.81552 0.90528 1.21464 1.00154 0.91432 0.99789 1.21604 1.01182 0.93165 1.00791 1.20842 0.82686 0.82435 0.82612 1.90628 1.38250 1.81538 1.36148 1.48575 1.41389 1.05244 1.39232 1.22971 0.92290 0.97741 0.90816 1.21408 0.95609 0.89972 0.86818 0.91248 1.42679 1.05791 1.75244 1.12653 1.19670 0.86901 1.33544 0.96743 0.90208 1.25485 0.99865 1.03037 0.98010 1.69811 1.27590 1.52675 1.11777 0.85157 0.80252 0.76695 0.78156 1.18812 1.22457 1.22524 1.21960 0.95200 0.95647 0.95123 1.21565 0.97973 1.00675 0.98097 1.21611 1.02682 0.93994 0.99866 1.22374 0.97856 0.84696 0.95395 1.23128 1.02675 0.93723 0.98290 0.91679 0.91690 0.94011 0.91760 0.91704 0.91542 0.91251 0.88993 0.89704 0.92397 0.89293 0.87529 0.92857 0.91084 0.78430 0.94143 0.93214 0.91069 0.94386 0.91294 0.90909 0.93396 0.90054 0.90987 0.90200 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.54 71.98 0.61 -1.48 16 2 C -0.10 -1.40 1.00 -50.80 -0.05 -1.45 16 3 C -0.13 -1.32 8.56 71.98 0.62 -0.71 16 4 C 0.05 0.83 6.64 72.75 0.48 1.31 16 5 O -0.40 -9.69 10.83 -148.98 -1.61 -11.30 16 6 C 0.08 1.51 3.41 30.97 0.11 1.61 16 7 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 8 C -0.09 -2.13 3.99 30.60 0.12 -2.01 16 9 C -0.13 -3.39 4.81 29.85 0.14 -3.25 16 10 C 0.52 16.85 7.85 87.66 0.69 17.54 16 11 O -0.58 -21.70 16.24 -3.01 -0.05 -21.75 16 12 N -0.61 -19.36 3.31 -811.36 -2.69 -22.05 16 13 C 0.09 2.97 5.92 86.73 0.51 3.48 16 14 C 0.17 6.30 2.84 46.18 0.13 6.43 16 15 H 0.07 2.50 8.02 -2.39 -0.02 2.48 16 16 N -0.72 -33.78 5.08 -317.32 -1.61 -35.39 16 17 C -0.24 -12.30 9.98 84.03 0.84 -11.46 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 21 Si 0.97 44.66 29.55 68.60 2.03 46.69 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 C -0.08 -2.41 0.87 -50.71 -0.04 -2.45 16 26 C -0.13 -4.17 7.94 71.98 0.57 -3.60 16 27 C -0.12 -3.33 8.68 71.98 0.62 -2.70 16 28 C 0.12 3.48 5.85 86.93 0.51 3.99 16 29 C -0.14 -2.13 5.80 31.58 0.18 -1.95 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.06 8.01 -2.39 -0.02 1.05 16 37 H 0.09 1.55 8.06 -2.39 -0.02 1.53 16 38 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 40 H 0.09 2.59 7.91 -2.39 -0.02 2.57 16 41 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 43 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.38 19.26 5.26 -92.71 -0.49 18.78 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.05 1.89 6.34 -2.39 -0.02 1.87 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 1.35 7.91 -2.39 -0.02 1.33 16 49 H 0.07 1.63 8.07 -2.38 -0.02 1.61 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.08 2.12 7.99 -2.39 -0.02 2.10 16 53 H 0.07 2.14 7.95 -2.39 -0.02 2.12 16 54 H 0.08 1.24 7.42 -2.39 -0.02 1.22 16 55 H 0.09 1.09 7.86 -2.39 -0.02 1.07 16 Total: -1.00 -65.25 426.38 3.21 -62.03 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.34 Total: 39.07 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.52 Total: -0.16 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -4.01 Total: -114.58 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.66 Total: -33.05 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.25 3.21 -62.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996559359.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.251 kcal (2) G-P(sol) polarization free energy of solvation -65.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds