Wall clock time and date at job start Tue Mar 31 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.54188 * 2 1 4 4 C 1.54097 * 110.48693 * 122.61875 * 2 1 3 5 5 O 1.43745 * 107.29442 * 120.70461 * 4 2 1 6 6 C 1.44382 * 106.97554 * 333.48168 * 5 4 2 7 7 H 1.08997 * 110.62085 * 281.56061 * 6 5 4 8 8 C 1.52998 * 110.61755 * 158.56078 * 6 5 4 9 9 C 1.53002 * 109.47279 * 66.45468 * 8 6 5 10 10 C 1.50697 * 109.47318 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00069 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99854 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64882 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26779 * 181.02613 * 13 12 10 15 15 H 1.08999 * 110.71590 * 140.56099 * 14 13 12 16 16 N 1.46503 * 110.72073 * 263.65288 * 14 13 12 17 17 C 1.36942 * 119.99975 * 273.55247 * 16 14 13 18 18 H 1.07996 * 120.00107 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99845 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99850 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46963 * 90.00528 * 21 19 17 23 23 H 1.48506 * 109.47110 * 210.00107 * 21 19 17 24 24 H 1.48493 * 109.47629 * 330.00337 * 21 19 17 25 25 C 1.55152 * 102.94590 * 22.19486 * 14 13 12 26 26 C 1.52998 * 111.00440 * 82.57211 * 25 14 13 27 27 C 1.53004 * 111.00617 * 206.42206 * 25 14 13 28 28 C 1.47422 * 125.64601 * 179.71848 * 12 10 9 29 29 C 1.54818 * 110.48439 * 237.38349 * 2 1 3 30 30 H 1.08996 * 109.47101 * 298.83604 * 1 2 3 31 31 H 1.08997 * 109.47214 * 58.83452 * 1 2 3 32 32 H 1.09000 * 109.47387 * 178.83658 * 1 2 3 33 33 H 1.08998 * 109.46612 * 181.16756 * 3 2 1 34 34 H 1.09004 * 109.46691 * 301.16157 * 3 2 1 35 35 H 1.08996 * 109.46809 * 61.16607 * 3 2 1 36 36 H 1.08998 * 109.88273 * 1.27725 * 4 2 1 37 37 H 1.08998 * 110.00322 * 240.19907 * 4 2 1 38 38 H 1.09001 * 109.47249 * 186.45947 * 8 6 5 39 39 H 1.09000 * 109.47244 * 306.45604 * 8 6 5 40 40 H 1.09001 * 109.47372 * 300.00404 * 9 8 6 41 41 H 1.09000 * 109.46871 * 59.99908 * 9 8 6 42 42 H 1.08999 * 109.88653 * 300.44366 * 13 12 10 43 43 H 1.08996 * 109.87867 * 61.61272 * 13 12 10 44 44 H 0.96997 * 120.00007 * 93.54325 * 16 14 13 45 45 H 0.96996 * 119.99803 * 180.02562 * 20 19 17 46 46 H 1.08991 * 109.47320 * 59.99815 * 26 25 14 47 47 H 1.09000 * 109.46963 * 180.02562 * 26 25 14 48 48 H 1.09006 * 109.47116 * 300.00189 * 26 25 14 49 49 H 1.09000 * 109.46892 * 60.00000 * 27 25 14 50 50 H 1.08998 * 109.46836 * 179.97438 * 27 25 14 51 51 H 1.08997 * 109.46936 * 300.00274 * 27 25 14 52 52 H 1.08994 * 110.36804 * 274.74488 * 28 12 10 53 53 H 1.09006 * 110.37136 * 37.06682 * 28 12 10 54 54 H 1.08996 * 110.90598 * 20.40280 * 29 2 1 55 55 H 1.09001 * 110.90139 * 143.97383 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4327 0.0000 4 6 2.0694 -0.7781 1.2158 5 8 2.8754 -1.8556 0.7103 6 6 2.3780 -2.1717 -0.6078 7 1 1.4697 -2.7707 -0.5419 8 6 3.4464 -2.8988 -1.4268 9 6 3.7187 -4.2707 -0.8065 10 6 4.7705 -4.9871 -1.6135 11 8 5.2551 -4.4528 -2.5885 12 7 5.1727 -6.2215 -1.2518 13 6 4.6710 -6.9824 -0.0982 14 6 5.4353 -8.3228 -0.0661 15 1 5.6785 -8.6034 0.9587 16 7 4.6580 -9.3785 -0.7200 17 6 3.7315 -10.0894 -0.0049 18 1 3.5741 -9.8722 1.0412 19 6 2.9947 -11.0894 -0.6247 20 7 3.1869 -11.3544 -1.8995 21 14 1.7314 -12.0597 0.3509 22 1 0.4134 -11.3805 0.2675 23 1 1.6184 -13.4300 -0.2103 24 1 2.1578 -12.1401 1.7710 25 6 6.7245 -8.0071 -0.8696 26 6 7.7691 -7.3245 0.0157 27 6 7.2953 -9.2738 -1.5104 28 6 6.1841 -7.0349 -1.9510 29 6 2.0718 -0.7817 -1.2216 30 1 -0.3633 0.4956 0.9002 31 1 -0.3633 0.5318 -0.8793 32 1 -0.3634 -1.0274 -0.0209 33 1 3.1565 1.4123 -0.0209 34 1 1.6964 1.9595 -0.8794 35 1 1.7303 1.9468 0.9002 36 1 1.2392 -1.1779 1.7981 37 1 2.6767 -0.1218 1.8390 38 1 3.0951 -3.0262 -2.4507 39 1 4.3649 -2.3120 -1.4282 40 1 4.0700 -4.1432 0.2175 41 1 2.8001 -4.8575 -0.8050 42 1 4.8571 -6.4275 0.8213 43 1 3.6030 -7.1674 -0.2123 44 1 4.7996 -9.5737 -1.6595 45 1 2.6718 -12.0529 -2.3327 46 1 8.0270 -7.9817 0.8461 47 1 8.6622 -7.1141 -0.5726 48 1 7.3620 -6.3909 0.4042 49 1 6.5571 -9.7023 -2.1883 50 1 8.1980 -9.0238 -2.0677 51 1 7.5370 -9.9975 -0.7320 52 1 5.7249 -7.5905 -2.7686 53 1 6.9876 -6.4010 -2.3262 54 1 1.3140 -0.8591 -2.0011 55 1 2.9794 -0.3183 -1.6085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996559364.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:03 Heat of formation + Delta-G solvation = -107.790799 kcal Electronic energy + Delta-G solvation = -30670.354158 eV Core-core repulsion = 26705.862313 eV Total energy + Delta-G solvation = -3964.491845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.41540 -40.85711 -39.34225 -35.77261 -35.69461 -34.70088 -34.30277 -32.59628 -30.46583 -29.43148 -28.25082 -28.03274 -27.69983 -26.81208 -25.75301 -24.85165 -23.02206 -21.98762 -20.42857 -20.24205 -19.79513 -19.08805 -17.94881 -17.53073 -17.23692 -16.65079 -16.55589 -16.13006 -15.91221 -15.77660 -15.53996 -15.11092 -14.79311 -14.65120 -14.49099 -14.33937 -14.16479 -13.81798 -13.75494 -13.70228 -13.40988 -13.23418 -13.04540 -12.98190 -12.82300 -12.75493 -12.70267 -12.64819 -12.40733 -12.23267 -12.15989 -12.08978 -12.05139 -11.81420 -11.61173 -11.56713 -11.45391 -11.41251 -11.26426 -10.97349 -10.80225 -10.54401 -9.60962 -9.00020 -7.91291 -5.19567 1.50644 1.50674 1.59116 1.61968 2.06333 2.58218 2.91703 3.33003 3.40225 3.48382 3.66519 3.79093 3.82258 3.88225 3.89673 3.96653 4.06354 4.08725 4.26927 4.32754 4.34040 4.40583 4.47238 4.50489 4.61269 4.66063 4.69521 4.71585 4.76841 4.78445 4.80333 4.81137 4.89264 4.92854 4.95746 5.00275 5.02560 5.05948 5.08661 5.09989 5.11565 5.20962 5.23538 5.29942 5.30503 5.35141 5.40343 5.42280 5.54985 5.60706 5.99830 6.29921 6.58952 7.14419 7.37493 8.11551 8.34900 9.32034 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002637 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.580697 B =10615.641609 C =12194.012759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.048 3.952 5 O -0.394 6.394 6 C 0.078 3.922 7 H 0.076 0.924 8 C -0.088 4.088 9 C -0.124 4.124 10 C 0.520 3.480 11 O -0.590 6.590 12 N -0.607 5.607 13 C 0.083 3.917 14 C 0.169 3.831 15 H 0.079 0.921 16 N -0.723 5.723 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.302 1.302 24 H -0.267 1.267 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.120 4.120 28 C 0.119 3.881 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.375 0.625 45 H 0.248 0.752 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.037 0.963 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.042 0.958 53 H 0.074 0.926 54 H 0.090 0.910 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 22.874 6.409 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.029 4.029 5 O -0.314 6.314 6 C 0.021 3.979 7 H 0.093 0.907 8 C -0.125 4.125 9 C -0.163 4.163 10 C 0.311 3.689 11 O -0.472 6.472 12 N -0.339 5.339 13 C -0.042 4.042 14 C 0.059 3.941 15 H 0.096 0.904 16 N -0.363 5.363 17 C -0.365 4.365 18 H 0.100 0.900 19 C -0.266 4.266 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.219 1.219 23 H -0.229 1.229 24 H -0.191 1.191 25 C -0.078 4.078 26 C -0.179 4.179 27 C -0.177 4.177 28 C -0.004 4.004 29 C -0.178 4.178 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.061 0.939 53 H 0.092 0.908 54 H 0.109 0.891 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.503 23.037 6.163 23.853 hybrid contribution -1.052 -1.019 -0.415 1.522 sum -0.549 22.018 5.748 22.763 Atomic orbital electron populations 1.21868 0.92539 1.02122 1.02915 1.21949 0.97067 0.96707 0.94150 1.21826 1.00678 0.93868 1.02805 1.23466 0.95028 0.88365 0.95991 1.88863 1.57271 1.53553 1.31721 1.23172 0.95971 0.96167 0.82577 0.90661 1.21286 0.99023 0.93669 0.98566 1.21571 0.97624 0.96646 1.00499 1.20945 0.83230 0.79985 0.84777 1.90627 1.59386 1.67138 1.30014 1.48542 1.40538 1.15290 1.29559 1.23047 0.99208 0.94108 0.87885 1.21478 0.89614 0.86480 0.96570 0.90351 1.42609 1.44054 1.39005 1.10619 1.19628 1.11824 1.10830 0.94239 0.89999 1.25485 1.02829 1.01393 0.96869 1.69818 1.45456 1.35439 1.11307 0.85220 0.79241 0.77403 0.78370 1.21859 1.22875 1.19133 1.21997 0.95368 0.95117 0.95286 1.21629 0.97143 1.00014 0.99162 1.21507 1.00048 0.95771 1.00423 1.22264 0.90750 0.92496 0.94847 1.23300 1.02186 0.94275 0.98049 0.91405 0.91514 0.92770 0.92870 0.91687 0.91380 0.91864 0.89326 0.90351 0.91640 0.87610 0.88473 0.89659 0.92613 0.79186 0.94280 0.91030 0.91305 0.92658 0.94394 0.91164 0.92318 0.93941 0.90783 0.89101 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.26 71.98 0.59 -0.91 16 2 C -0.10 -1.32 0.99 -51.19 -0.05 -1.37 16 3 C -0.13 -1.50 8.27 71.98 0.60 -0.90 16 4 C 0.05 0.79 7.03 72.35 0.51 1.29 16 5 O -0.39 -8.86 10.89 -148.98 -1.62 -10.48 16 6 C 0.08 1.57 3.33 31.28 0.10 1.68 16 7 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 8 C -0.09 -2.12 4.28 30.59 0.13 -1.99 16 9 C -0.12 -3.30 4.81 29.85 0.14 -3.15 16 10 C 0.52 17.70 7.85 87.66 0.69 18.39 16 11 O -0.59 -23.55 16.24 -3.02 -0.05 -23.60 16 12 N -0.61 -20.56 3.31 -811.35 -2.69 -23.24 16 13 C 0.08 2.73 5.91 86.73 0.51 3.24 16 14 C 0.17 6.03 2.85 46.18 0.13 6.17 16 15 H 0.08 2.69 8.02 -2.39 -0.02 2.67 16 16 N -0.72 -33.74 4.62 -317.33 -1.47 -35.20 16 17 C -0.23 -12.07 9.98 84.03 0.84 -11.23 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 20 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 21 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C -0.08 -2.33 0.84 -50.71 -0.04 -2.37 16 26 C -0.12 -2.91 8.59 71.98 0.62 -2.29 16 27 C -0.12 -3.77 8.22 71.98 0.59 -3.18 16 28 C 0.12 4.06 5.83 86.94 0.51 4.57 16 29 C -0.14 -2.26 5.70 31.90 0.18 -2.07 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.95 7.69 -2.39 -0.02 0.93 16 37 H 0.09 1.29 7.70 -2.39 -0.02 1.28 16 38 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 39 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.11 2.63 7.92 -2.39 -0.02 2.62 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 44 H 0.37 19.32 6.11 -92.71 -0.57 18.75 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.05 1.31 7.91 -2.38 -0.02 1.30 16 49 H 0.04 1.43 6.39 -2.39 -0.02 1.42 16 50 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 53 H 0.07 2.43 7.95 -2.38 -0.02 2.41 16 54 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 55 H 0.08 1.29 7.78 -2.39 -0.02 1.27 16 Total: -1.00 -66.00 426.75 3.27 -62.73 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.27 Total: 38.47 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.52 Total: 2.26 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.87 Total: -116.13 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.67 Total: -34.09 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.00 3.27 -62.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996559364.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.060 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds