Wall clock time and date at job start Tue Mar 31 2020 21:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.52047 * 2 1 4 4 C 1.53175 * 109.51930 * 120.12322 * 2 1 3 5 5 C 1.53184 * 109.03459 * 176.88452 * 4 2 1 6 6 C 1.53096 * 109.16213 * 303.02129 * 5 4 2 7 7 H 1.09002 * 109.48066 * 297.61227 * 6 5 4 8 8 C 1.53001 * 109.47714 * 177.58732 * 6 5 4 9 9 C 1.50703 * 109.47081 * 174.99836 * 8 6 5 10 10 O 1.21286 * 119.99875 * 0.02562 * 9 8 6 11 11 N 1.34768 * 120.00263 * 180.02562 * 9 8 6 12 12 C 1.46499 * 120.00378 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47288 * 155.00149 * 12 11 9 14 14 C 1.53000 * 109.46977 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47146 * 299.99756 * 14 13 12 16 16 N 1.46504 * 109.46949 * 180.02562 * 15 14 13 17 17 C 1.36934 * 119.99567 * 155.00410 * 16 15 14 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 C 1.52997 * 109.46984 * 60.00248 * 15 14 13 26 26 C 1.53000 * 109.47350 * 299.99890 * 25 15 14 27 27 O 1.42902 * 109.41313 * 57.60993 * 6 5 4 28 28 C 1.42901 * 114.09814 * 298.83980 * 27 6 5 29 29 H 1.09007 * 109.47217 * 299.87686 * 1 2 3 30 30 H 1.09008 * 109.47132 * 59.87021 * 1 2 3 31 31 H 1.08999 * 109.47290 * 179.87236 * 1 2 3 32 32 H 1.09004 * 109.46619 * 180.12677 * 3 2 1 33 33 H 1.09001 * 109.47114 * 300.12424 * 3 2 1 34 34 H 1.08998 * 109.47098 * 60.12868 * 3 2 1 35 35 H 1.09002 * 109.54211 * 57.01977 * 4 2 1 36 36 H 1.08997 * 109.62070 * 296.79946 * 4 2 1 37 37 H 1.08995 * 109.52113 * 183.11446 * 5 4 2 38 38 H 1.08994 * 109.51775 * 62.92788 * 5 4 2 39 39 H 1.09003 * 109.46697 * 55.00439 * 8 6 5 40 40 H 1.08991 * 109.47519 * 295.00424 * 8 6 5 41 41 H 0.97007 * 119.99700 * 0.02562 * 11 9 8 42 42 H 1.09001 * 109.46948 * 35.00329 * 12 11 9 43 43 H 1.09001 * 109.46979 * 60.00199 * 13 12 11 44 44 H 1.08996 * 109.47024 * 300.00213 * 13 12 11 45 45 H 1.09007 * 109.46634 * 180.02562 * 14 13 12 46 46 H 1.09001 * 109.47372 * 60.00111 * 14 13 12 47 47 H 1.09001 * 109.47274 * 300.00414 * 15 14 13 48 48 H 0.97000 * 119.99825 * 334.99591 * 16 15 14 49 49 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 50 50 H 1.09001 * 109.46979 * 59.99986 * 25 15 14 51 51 H 1.09000 * 109.47470 * 179.97438 * 25 15 14 52 52 H 1.09001 * 109.47157 * 299.99986 * 26 25 15 53 53 H 1.09000 * 109.47626 * 179.97438 * 26 25 15 54 54 H 1.09001 * 109.48014 * 301.17874 * 28 27 6 55 55 H 1.08998 * 109.49345 * 181.14926 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0418 -0.7245 1.2487 5 6 3.5716 -0.7865 1.1987 6 6 4.0043 -1.4817 -0.0949 7 1 3.6316 -2.5061 -0.0992 8 6 5.5318 -1.4940 -0.1811 9 6 5.9603 -2.2846 -1.3904 10 8 5.1261 -2.7882 -2.1125 11 7 7.2705 -2.4320 -1.6695 12 6 7.6871 -3.2000 -2.8454 13 6 9.0705 -2.7290 -3.2984 14 6 9.5053 -3.5307 -4.5269 15 6 9.5641 -5.0176 -4.1709 16 7 9.9810 -5.7851 -5.3471 17 6 10.5910 -7.0010 -5.1901 18 1 10.7652 -7.3940 -4.1993 19 6 10.9855 -7.7286 -6.3045 20 7 10.7728 -7.2500 -7.5120 21 14 11.8183 -9.3869 -6.0905 22 1 12.1375 -9.9564 -7.4242 23 1 13.0714 -9.2147 -5.3124 24 1 10.9075 -10.3082 -5.3646 25 6 8.1807 -5.4886 -3.7179 26 6 7.7459 -4.6869 -2.4895 27 8 3.4694 -0.7750 -1.2158 28 6 2.0416 -0.7255 -1.2472 29 1 -0.3634 0.5119 0.8911 30 1 -0.3634 0.5159 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 3.1313 1.4410 -0.0023 33 1 1.6765 1.9569 -0.8889 34 1 1.6802 1.9555 0.8911 35 1 1.6366 -1.7361 1.2751 36 1 1.7278 -0.1826 2.1408 37 1 3.9416 -1.3489 2.0558 38 1 3.9779 0.2246 1.2223 39 1 5.9427 -1.9537 0.7178 40 1 5.8992 -0.4714 -0.2666 41 1 7.9378 -2.0295 -1.0918 42 1 6.9695 -3.0479 -3.6517 43 1 9.7881 -2.8811 -2.4922 44 1 9.0285 -1.6699 -3.5524 45 1 10.4911 -3.1954 -4.8493 46 1 8.7876 -3.3782 -5.3330 47 1 10.2818 -5.1701 -3.3648 48 1 9.8248 -5.4321 -6.2369 49 1 10.3407 -6.3886 -7.6232 50 1 7.4630 -5.3361 -4.5240 51 1 8.2225 -6.5480 -3.4647 52 1 8.4636 -4.8394 -1.6834 53 1 6.7601 -5.0222 -2.1670 54 1 1.6431 -1.7399 -1.2667 55 1 1.7157 -0.1898 -2.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026530635.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:55 Heat of formation + Delta-G solvation = -131.262385 kcal Electronic energy + Delta-G solvation = -30153.986313 eV Core-core repulsion = 26188.476664 eV Total energy + Delta-G solvation = -3965.509650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.35323 -40.59337 -39.27664 -36.65274 -36.19882 -34.79023 -34.13592 -32.37570 -31.77684 -30.66276 -28.63549 -28.18411 -26.92835 -25.69973 -25.05041 -23.71175 -22.94591 -22.29259 -21.37962 -20.82315 -19.82679 -19.34218 -17.97349 -17.45943 -17.43925 -16.92256 -16.52380 -15.99791 -15.95736 -15.91092 -15.54252 -15.36163 -15.19649 -15.05934 -14.93210 -14.48259 -14.15232 -13.95207 -13.54696 -13.52631 -13.17512 -13.06341 -13.05482 -12.95044 -12.83464 -12.77833 -12.68391 -12.45656 -12.36713 -12.22915 -12.10753 -11.94928 -11.86988 -11.77486 -11.53624 -11.48685 -11.36554 -11.13926 -11.10850 -10.87630 -10.72346 -10.21631 -9.99191 -9.11580 -8.38828 -5.32101 1.56970 1.67516 1.75608 1.83665 2.20903 2.71592 2.86470 3.39738 3.61473 3.67108 3.70312 3.78234 3.79422 3.80882 3.83605 4.03415 4.16890 4.19993 4.27818 4.29037 4.30658 4.40421 4.46461 4.51069 4.55304 4.57092 4.62728 4.66408 4.71884 4.78202 4.79775 4.83364 4.88453 4.89835 4.94954 5.02002 5.05140 5.06283 5.09193 5.12990 5.15851 5.18931 5.23157 5.30226 5.38718 5.43218 5.50095 5.53667 5.58240 5.61754 6.36226 6.49600 6.67408 7.10714 7.39696 8.01161 8.13145 9.13152 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.001779 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.846722 B =15732.941017 C =15871.867594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.100 3.900 7 H 0.039 0.961 8 C -0.127 4.127 9 C 0.506 3.494 10 O -0.581 6.581 11 N -0.714 5.714 12 C 0.154 3.846 13 C -0.104 4.104 14 C -0.115 4.115 15 C 0.178 3.822 16 N -0.752 5.752 17 C -0.327 4.327 18 H 0.066 0.934 19 C -0.109 4.109 20 N -0.977 5.977 21 Si 1.128 2.872 22 H -0.294 1.294 23 H -0.274 1.274 24 H -0.281 1.281 25 C -0.122 4.122 26 C -0.109 4.109 27 O -0.388 6.388 28 C 0.070 3.930 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.417 0.583 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.357 0.643 49 H 0.243 0.757 50 H 0.034 0.966 51 H 0.038 0.962 52 H 0.078 0.922 53 H 0.046 0.954 54 H 0.035 0.965 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 20.888 24.909 36.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.149 4.149 5 C -0.182 4.182 6 C 0.042 3.958 7 H 0.058 0.942 8 C -0.166 4.166 9 C 0.294 3.706 10 O -0.460 6.460 11 N -0.367 5.367 12 C 0.049 3.951 13 C -0.142 4.142 14 C -0.153 4.153 15 C 0.070 3.930 16 N -0.393 5.393 17 C -0.458 4.458 18 H 0.084 0.916 19 C -0.300 4.300 20 N -0.626 5.626 21 Si 0.952 3.048 22 H -0.220 1.220 23 H -0.200 1.200 24 H -0.207 1.207 25 C -0.163 4.163 26 C -0.148 4.148 27 O -0.308 6.308 28 C -0.006 4.006 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.189 0.811 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.096 0.904 53 H 0.065 0.935 54 H 0.054 0.946 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.703 19.253 23.697 34.334 hybrid contribution -0.911 0.941 0.105 1.314 sum -16.614 20.193 23.803 35.360 Atomic orbital electron populations 1.21786 0.93200 1.01974 1.02635 1.21200 0.96588 0.96767 0.95453 1.21774 1.01336 0.94041 1.01821 1.21671 0.95227 1.00390 0.97595 1.22237 0.96549 1.02485 0.96911 1.21875 0.92618 0.94653 0.86620 0.94245 1.21833 0.95089 1.02835 0.96859 1.21285 0.82113 0.79989 0.87226 1.90723 1.52791 1.50393 1.52101 1.45949 1.07464 1.54537 1.28716 1.20731 0.96375 0.90180 0.87846 1.21632 0.94755 1.00059 0.97772 1.21661 1.01284 0.94128 0.98270 1.20426 0.93042 0.90609 0.88945 1.42704 1.72010 1.20769 1.03819 1.20384 1.33446 0.97266 0.94735 0.91562 1.27220 1.02753 1.08259 0.91772 1.70992 1.47832 1.20756 1.22994 0.82632 0.75732 0.71261 0.75147 1.21978 1.20033 1.20686 1.22007 0.98502 0.98812 0.96993 1.21737 1.00628 0.94855 0.97627 1.87928 1.20554 1.75828 1.46457 1.22634 0.80782 0.98848 0.98374 0.91203 0.92366 0.92827 0.92488 0.93129 0.91616 0.92398 0.89836 0.88913 0.89756 0.84135 0.85996 0.74529 0.92598 0.89184 0.89385 0.91468 0.93172 0.93477 0.81103 0.94701 0.94725 0.94338 0.90378 0.93537 0.94641 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.49 71.98 0.61 -0.85 16 2 C -0.10 -1.28 0.77 -52.09 -0.04 -1.32 16 3 C -0.13 -1.55 8.08 71.98 0.58 -0.97 16 4 C -0.11 -1.22 4.81 30.71 0.15 -1.07 16 5 C -0.14 -1.50 5.06 30.69 0.16 -1.35 16 6 C 0.10 1.74 2.19 30.63 0.07 1.81 16 7 H 0.04 0.86 7.95 -2.39 -0.02 0.85 16 8 C -0.13 -1.70 5.41 29.85 0.16 -1.54 16 9 C 0.51 11.71 7.67 87.66 0.67 12.38 16 10 O -0.58 -20.04 15.09 10.68 0.16 -19.88 16 11 N -0.71 -13.70 5.08 -442.54 -2.25 -15.95 16 12 C 0.15 4.01 2.45 44.99 0.11 4.12 16 13 C -0.10 -2.36 5.39 30.59 0.16 -2.20 16 14 C -0.11 -3.68 5.39 30.59 0.16 -3.51 16 15 C 0.18 7.16 2.77 44.99 0.12 7.29 16 16 N -0.75 -39.13 5.12 -322.94 -1.65 -40.78 16 17 C -0.33 -18.83 9.93 84.03 0.83 -17.99 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.11 -6.52 5.50 84.86 0.47 -6.05 16 20 N -0.98 -62.96 13.70 21.65 0.30 -62.66 16 21 Si 1.13 53.17 29.92 68.60 2.05 55.22 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.12 -4.74 5.50 30.59 0.17 -4.57 16 26 C -0.11 -3.27 5.50 30.60 0.17 -3.10 16 27 O -0.39 -8.89 9.07 -135.25 -1.23 -10.11 16 28 C 0.07 1.34 5.54 72.01 0.40 1.74 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.75 6.15 -2.38 -0.01 0.73 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.76 6.63 -2.39 -0.02 0.75 16 39 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.42 4.58 8.60 -92.70 -0.80 3.78 16 42 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 48 H 0.36 19.57 6.63 -92.71 -0.61 18.95 16 49 H 0.24 15.63 6.77 -92.70 -0.63 15.00 16 50 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 55 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -79.28 418.80 1.92 -77.36 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.42 Total: 34.01 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.96 Total: -17.20 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -3.60 Total: -119.40 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.07 Total: -30.00 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 2.05 Total: 55.22 kcal Total: -79.28 1.92 -77.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026530635.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.900 kcal (2) G-P(sol) polarization free energy of solvation -79.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds