Wall clock time and date at job start Tue Mar 31 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 120.00021 * 2 1 4 4 H 1.08008 * 119.99518 * 200.40240 * 3 2 1 5 5 C 1.38804 * 120.00180 * 20.40333 * 3 2 1 6 6 N 1.31613 * 120.00143 * 14.98611 * 5 3 2 7 7 Si 1.86807 * 119.99918 * 194.98643 * 5 3 2 8 8 H 1.48496 * 109.47102 * 85.00191 * 7 5 3 9 9 H 1.48504 * 109.47173 * 205.00266 * 7 5 3 10 10 H 1.48497 * 109.47117 * 324.99917 * 7 5 3 11 11 C 1.46501 * 119.99372 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49390 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.50186 * 300.00303 * 11 2 1 14 14 C 1.53041 * 109.53715 * 181.32197 * 13 11 2 15 15 C 1.53197 * 109.30899 * 298.63178 * 14 13 11 16 16 N 1.46930 * 108.77506 * 54.63890 * 15 14 13 17 17 C 1.34783 * 120.62581 * 126.36378 * 16 15 14 18 18 O 1.21280 * 119.99420 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00365 * 0.27850 * 17 16 15 20 20 C 1.53001 * 109.46925 * 179.72078 * 19 17 16 21 21 C 1.53007 * 109.46951 * 179.97438 * 20 19 17 22 22 H 1.09003 * 110.54806 * 305.70207 * 21 20 19 23 23 C 1.54990 * 110.61716 * 182.82376 * 21 20 19 24 24 C 1.54985 * 102.01025 * 204.59483 * 23 21 20 25 25 C 1.53001 * 110.34586 * 262.02495 * 24 23 21 26 26 C 1.53004 * 110.57033 * 139.42238 * 24 23 21 27 27 C 1.54105 * 104.25293 * 20.67016 * 24 23 21 28 28 O 1.43738 * 107.29303 * 2.16145 * 27 24 23 29 29 C 1.46923 * 118.73754 * 306.64139 * 16 15 14 30 30 H 1.08991 * 109.47653 * 275.12502 * 1 2 3 31 31 H 1.09007 * 109.46866 * 35.12898 * 1 2 3 32 32 H 1.09009 * 109.47203 * 155.12151 * 1 2 3 33 33 H 0.97003 * 120.00353 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.45582 * 61.29668 * 13 11 2 35 35 H 1.08997 * 109.44625 * 301.33231 * 13 11 2 36 36 H 1.09000 * 109.49852 * 178.68853 * 14 13 11 37 37 H 1.09000 * 109.50099 * 58.58191 * 14 13 11 38 38 H 1.08996 * 109.59116 * 294.84793 * 15 14 13 39 39 H 1.09004 * 109.58405 * 174.42554 * 15 14 13 40 40 H 1.09003 * 109.47242 * 299.72275 * 19 17 16 41 41 H 1.08994 * 109.47267 * 59.72152 * 19 17 16 42 42 H 1.08990 * 109.47355 * 299.99765 * 20 19 17 43 43 H 1.09001 * 109.47033 * 60.00388 * 20 19 17 44 44 H 1.08998 * 110.90835 * 322.67417 * 23 21 20 45 45 H 1.08998 * 110.90809 * 86.27519 * 23 21 20 46 46 H 1.08999 * 109.47435 * 176.21463 * 25 24 23 47 47 H 1.08994 * 109.46815 * 296.21671 * 25 24 23 48 48 H 1.08998 * 109.46721 * 56.21563 * 25 24 23 49 49 H 1.09000 * 109.47263 * 303.64969 * 26 24 23 50 50 H 1.08996 * 109.47268 * 63.65328 * 26 24 23 51 51 H 1.09003 * 109.47165 * 183.65578 * 26 24 23 52 52 H 1.08998 * 109.87429 * 242.73939 * 27 24 23 53 53 H 1.08997 * 110.00490 * 121.65613 * 27 24 23 54 54 H 1.08998 * 109.58357 * 173.14308 * 29 16 15 55 55 H 1.08996 * 109.58296 * 293.56720 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3261 5 6 1.5210 2.3502 0.4191 6 7 0.3883 2.2832 1.0859 7 14 2.2826 4.0125 0.0365 8 1 1.8676 4.4464 -1.3217 9 1 1.8231 5.0095 1.0366 10 1 3.7626 3.9032 0.0906 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8280 -2.0714 1.2502 14 6 2.6174 -3.3824 1.2684 15 6 2.2494 -4.2124 0.0344 16 7 2.4652 -3.3947 -1.1671 17 6 3.2365 -3.8466 -2.1758 18 8 3.4065 -3.1623 -3.1625 19 6 3.8820 -5.2050 -2.0805 20 6 4.6911 -5.4753 -3.3506 21 6 5.3470 -6.8542 -3.2536 22 1 5.9347 -6.9349 -2.3391 23 6 6.2317 -7.1264 -4.4967 24 6 6.2563 -8.6754 -4.5421 25 6 7.5372 -9.2063 -3.8951 26 6 6.1374 -9.1729 -5.9841 27 6 5.0222 -9.0987 -3.7220 28 8 4.3498 -7.8967 -3.3107 29 6 1.8293 -2.0725 -1.2453 30 1 -0.3634 0.0918 1.0234 31 1 -0.3633 0.8405 -0.5914 32 1 -0.3634 -0.9324 -0.4324 33 1 -0.0509 3.0969 1.3791 34 1 0.7604 -2.2904 1.2386 35 1 2.0698 -1.4896 2.1397 36 1 2.3713 -3.9428 2.1703 37 1 3.6853 -3.1643 1.2549 38 1 1.2019 -4.5080 0.0920 39 1 2.8799 -5.1005 -0.0098 40 1 4.5440 -5.2328 -1.2150 41 1 3.1103 -5.9671 -1.9723 42 1 4.0291 -5.4475 -4.2160 43 1 5.4628 -4.7131 -3.4588 44 1 5.7726 -6.7193 -5.3976 45 1 7.2345 -6.7229 -4.3564 46 1 7.5091 -10.2957 -3.8741 47 1 8.4001 -8.8761 -4.4734 48 1 7.6147 -8.8252 -2.8769 49 1 5.2309 -8.7685 -6.4344 50 1 7.0052 -8.8429 -6.5551 51 1 6.0912 -10.2620 -5.9901 52 1 5.3363 -9.6660 -2.8459 53 1 4.3561 -9.7044 -4.3363 54 1 2.1827 -1.5491 -2.1337 55 1 0.7468 -2.1901 -1.2943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027661570.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:04 Heat of formation + Delta-G solvation = -95.107876 kcal Electronic energy + Delta-G solvation = -30425.411725 eV Core-core repulsion = 26461.469852 eV Total energy + Delta-G solvation = -3963.941873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.33642 -40.76043 -38.95878 -36.77355 -35.72608 -34.53059 -33.86841 -32.85787 -30.97509 -29.84032 -28.22827 -28.08312 -27.01681 -26.53354 -25.50631 -24.56142 -23.02805 -22.01857 -20.98686 -20.20221 -19.75935 -18.78765 -18.15322 -17.44999 -17.09054 -16.77687 -16.45920 -16.37290 -15.85030 -15.69605 -15.44279 -15.18952 -14.89696 -14.57295 -14.53662 -14.46253 -14.39986 -14.06550 -13.78147 -13.72791 -13.60219 -13.54197 -13.00773 -12.89938 -12.80086 -12.66084 -12.50382 -12.38251 -12.29613 -12.21631 -12.09266 -12.04721 -11.93322 -11.79058 -11.68683 -11.57920 -11.51051 -11.39786 -11.34010 -10.78337 -10.64929 -10.49961 -9.68205 -8.79991 -7.85478 -5.31595 1.42756 1.45557 1.52946 1.66563 2.01684 2.49387 2.95107 3.26707 3.41629 3.59366 3.62488 3.74513 3.91017 3.96928 3.99129 4.07992 4.13304 4.16062 4.24099 4.31902 4.37042 4.37288 4.45320 4.53000 4.61776 4.70543 4.74714 4.75988 4.79026 4.79247 4.80937 4.83617 4.89292 4.92440 4.99074 5.02455 5.05257 5.08168 5.13640 5.15541 5.24308 5.26727 5.29368 5.32738 5.43938 5.44194 5.49105 5.53903 5.62588 5.69841 6.03890 6.29240 6.50545 7.11823 7.21828 7.84170 8.26215 9.17185 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002048 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.871935 B =13669.752002 C =14272.179826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.063 0.937 5 C -0.051 4.051 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.272 1.272 11 C 0.168 3.832 12 H 0.044 0.956 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.105 3.895 16 N -0.608 5.608 17 C 0.504 3.496 18 O -0.595 6.595 19 C -0.123 4.123 20 C -0.094 4.094 21 C 0.081 3.919 22 H 0.088 0.912 23 C -0.144 4.144 24 C -0.100 4.100 25 C -0.136 4.136 26 C -0.137 4.137 27 C 0.050 3.950 28 O -0.394 6.394 29 C 0.112 3.888 30 H 0.009 0.991 31 H 0.012 0.988 32 H 0.030 0.970 33 H 0.249 0.751 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.069 0.931 53 H 0.084 0.916 54 H 0.054 0.946 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -29.038 -6.069 32.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.395 4.395 4 H 0.081 0.919 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.197 1.197 11 C 0.060 3.940 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.294 3.706 18 O -0.476 6.476 19 C -0.163 4.163 20 C -0.132 4.132 21 C 0.024 3.976 22 H 0.105 0.895 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.193 4.193 26 C -0.194 4.194 27 C -0.027 4.027 28 O -0.314 6.314 29 C -0.013 4.013 30 H 0.027 0.973 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.072 0.928 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.788 -28.532 -6.462 31.541 hybrid contribution 0.013 1.747 -0.237 1.763 sum 11.801 -26.785 -6.700 30.027 Atomic orbital electron populations 1.20488 0.82554 0.95636 0.97736 1.44117 1.02165 1.01066 1.85994 1.19474 0.96934 0.86444 1.36606 0.91948 1.25674 0.98650 1.01435 0.98874 1.70228 1.20081 1.27212 1.40555 0.85292 0.78230 0.79892 0.77092 1.21447 1.21668 1.19672 1.20622 0.94796 0.85288 0.93291 0.93741 1.21944 1.00218 0.96484 0.97652 1.21896 1.00149 0.95136 0.98913 1.22077 1.03315 0.93897 0.82349 1.48317 1.48784 1.17630 1.19313 1.21554 0.77883 0.89555 0.81607 1.90667 1.63238 1.60666 1.33072 1.21669 1.01379 0.92004 1.01207 1.21320 0.99532 0.95170 0.97164 1.23174 0.88780 0.87083 0.98528 0.89472 1.23340 1.01150 0.95342 0.98325 1.21987 0.96279 0.94772 0.96938 1.21860 0.95458 1.01490 1.00528 1.21837 1.01895 1.01575 0.94072 1.23438 0.93586 0.87476 0.98152 1.88860 1.33516 1.19588 1.89395 1.21777 0.96893 0.83342 0.99257 0.97290 0.96912 0.95205 0.94177 0.92477 0.93934 0.87849 0.91740 0.90083 0.86158 0.86173 0.86891 0.92657 0.90495 0.91327 0.89012 0.91480 0.91809 0.92187 0.93179 0.91919 0.91379 0.91289 0.89760 0.92785 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.16 8.03 127.77 1.03 10.19 16 2 N -0.61 -31.71 2.82 -703.13 -1.98 -33.69 16 3 C -0.26 -15.22 9.61 84.03 0.81 -14.41 16 4 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 5 C -0.05 -2.96 5.06 84.86 0.43 -2.53 16 6 N -0.93 -56.28 10.67 21.65 0.23 -56.05 16 7 Si 0.97 46.82 29.58 68.60 2.03 48.85 16 8 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.17 7.05 2.72 44.92 0.12 7.17 16 12 H 0.04 2.01 7.85 -2.38 -0.02 1.99 16 13 C -0.12 -4.23 5.15 30.62 0.16 -4.07 16 14 C -0.12 -2.78 6.08 30.67 0.19 -2.59 16 15 C 0.10 2.11 6.34 86.36 0.55 2.65 16 16 N -0.61 -17.98 2.98 -819.73 -2.44 -20.42 16 17 C 0.50 15.25 7.70 87.65 0.67 15.93 16 18 O -0.60 -23.90 15.40 -3.03 -0.05 -23.95 16 19 C -0.12 -2.40 3.98 29.85 0.12 -2.28 16 20 C -0.09 -1.91 4.27 30.60 0.13 -1.78 16 21 C 0.08 1.26 3.30 31.28 0.10 1.36 16 22 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 23 C -0.14 -1.95 5.71 31.95 0.18 -1.76 16 24 C -0.10 -1.08 0.99 -51.13 -0.05 -1.13 16 25 C -0.14 -1.07 8.25 71.98 0.59 -0.47 16 26 C -0.14 -1.36 8.28 71.98 0.60 -0.76 16 27 C 0.05 0.64 7.04 72.36 0.51 1.15 16 28 O -0.39 -7.17 10.98 -148.98 -1.64 -8.81 16 29 C 0.11 4.31 5.77 86.22 0.50 4.80 16 30 H 0.01 0.48 7.40 -2.39 -0.02 0.47 16 31 H 0.01 0.68 7.22 -2.38 -0.02 0.67 16 32 H 0.03 1.29 6.35 -2.38 -0.02 1.28 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.06 1.95 7.72 -2.39 -0.02 1.93 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.53 5.94 -2.39 -0.01 1.51 16 40 H 0.12 1.66 7.69 -2.39 -0.02 1.64 16 41 H 0.11 1.91 7.79 -2.39 -0.02 1.89 16 42 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 43 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 44 H 0.07 1.09 7.78 -2.39 -0.02 1.07 16 45 H 0.09 1.03 7.86 -2.39 -0.02 1.01 16 46 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.07 0.72 7.69 -2.39 -0.02 0.71 16 53 H 0.08 1.02 7.70 -2.39 -0.02 1.00 16 54 H 0.05 2.44 7.01 -2.39 -0.02 2.43 16 55 H 0.06 2.34 6.48 -2.39 -0.02 2.33 16 Total: -1.00 -73.98 416.38 3.62 -70.36 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.83 Total: 12.24 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.63 Total: 11.47 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.19 Total: -110.16 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.68 Total: -32.76 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.98 3.62 -70.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027661570.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.751 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds