Wall clock time and date at job start Tue Mar 31 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.57128 * 2 1 4 4 C 1.53183 * 109.52339 * 120.15507 * 2 1 3 5 5 C 1.53173 * 109.03490 * 62.92886 * 4 2 1 6 6 C 1.53090 * 109.16273 * 56.97957 * 5 4 2 7 7 H 1.08994 * 109.48184 * 62.38927 * 6 5 4 8 8 C 1.53004 * 109.47915 * 182.40569 * 6 5 4 9 9 C 1.50698 * 109.47222 * 184.99784 * 8 6 5 10 10 O 1.21281 * 119.99960 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00216 * 180.02562 * 9 8 6 12 12 C 1.46493 * 120.00361 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.35886 * 324.73034 * 12 11 9 14 14 C 1.54838 * 109.36382 * 205.00010 * 12 11 9 15 15 C 1.50121 * 110.82094 * 200.92764 * 14 12 11 16 16 C 1.52521 * 105.41685 * 97.68315 * 15 14 12 17 17 C 1.46240 * 114.27710 * 270.59491 * 16 15 14 18 18 N 1.50172 * 107.53426 * 58.40604 * 17 16 15 19 19 C 1.36938 * 120.53440 * 109.56709 * 18 17 16 20 20 H 1.08006 * 119.99718 * 156.69693 * 19 18 17 21 21 C 1.38810 * 120.00092 * 336.69420 * 19 18 17 22 22 N 1.31611 * 120.00372 * 340.42452 * 21 19 18 23 23 Si 1.86807 * 119.99704 * 160.41782 * 21 19 18 24 24 H 1.48502 * 109.46768 * 60.00375 * 23 21 19 25 25 H 1.48495 * 109.46961 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47284 * 300.00469 * 23 21 19 27 27 C 1.43423 * 118.92488 * 289.59511 * 18 17 16 28 28 O 1.42903 * 109.41850 * 302.38717 * 6 5 4 29 29 C 1.42907 * 114.08981 * 61.15970 * 28 6 5 30 30 H 1.08997 * 109.47619 * 299.83830 * 1 2 3 31 31 H 1.08999 * 109.46981 * 59.84389 * 1 2 3 32 32 H 1.09004 * 109.46737 * 179.84154 * 1 2 3 33 33 H 1.09000 * 109.46898 * 180.15598 * 3 2 1 34 34 H 1.08998 * 109.47084 * 300.15190 * 3 2 1 35 35 H 1.08996 * 109.47377 * 60.15536 * 3 2 1 36 36 H 1.08999 * 109.54165 * 303.05676 * 4 2 1 37 37 H 1.09000 * 109.54406 * 182.79451 * 4 2 1 38 38 H 1.09002 * 109.52193 * 297.07467 * 5 4 2 39 39 H 1.08995 * 109.57391 * 176.91824 * 5 4 2 40 40 H 1.09006 * 109.46914 * 65.00529 * 8 6 5 41 41 H 1.08997 * 109.47473 * 305.00631 * 8 6 5 42 42 H 0.97004 * 120.00026 * 0.02562 * 11 9 8 43 43 H 1.09004 * 109.21209 * 321.27353 * 14 12 11 44 44 H 1.09007 * 109.20776 * 80.62828 * 14 12 11 45 45 H 1.08998 * 110.25286 * 216.65900 * 15 14 12 46 46 H 1.09003 * 110.24950 * 338.56385 * 15 14 12 47 47 H 1.09001 * 108.52016 * 31.83498 * 16 15 14 48 48 H 1.08999 * 108.52465 * 149.50643 * 16 15 14 49 49 H 1.09008 * 109.84749 * 177.91494 * 17 16 15 50 50 H 1.08998 * 109.84470 * 298.89782 * 17 16 15 51 51 H 0.96997 * 120.00347 * 179.97438 * 22 21 19 52 52 H 1.09004 * 108.16296 * 329.84022 * 27 18 17 53 53 H 1.09002 * 108.15974 * 213.28129 * 27 18 17 54 54 H 1.09002 * 109.47752 * 178.85606 * 29 28 6 55 55 H 1.09000 * 109.47872 * 58.82915 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0419 -0.7253 1.2484 5 6 1.5878 -2.1873 1.1982 6 6 2.0972 -2.8276 -0.0957 7 1 3.1871 -2.8197 -0.1006 8 6 1.5971 -4.2711 -0.1818 9 6 2.1977 -4.9394 -1.3917 10 8 2.9518 -4.3221 -2.1136 11 7 1.8968 -6.2229 -1.6714 12 6 2.4811 -6.8728 -2.8471 13 1 2.5740 -6.1451 -3.6534 14 6 1.5603 -8.0307 -3.3043 15 6 2.3202 -9.0177 -4.1423 16 6 2.7106 -10.1428 -3.1894 17 6 3.9955 -9.9449 -2.5197 18 7 3.9146 -8.6531 -1.7581 19 6 3.8687 -8.6541 -0.3895 20 1 4.1832 -7.7803 0.1619 21 6 3.4178 -9.7780 0.2890 22 7 2.6875 -10.6760 -0.3373 23 14 3.8477 -10.0158 2.0913 24 1 3.3106 -8.8796 2.8824 25 1 3.2500 -11.2845 2.5795 26 1 5.3236 -10.0720 2.2449 27 6 3.8855 -7.4185 -2.4875 28 8 1.6099 -2.0868 -1.2163 29 6 2.0416 -0.7248 -1.2475 30 1 -0.3634 0.5113 0.8914 31 1 -0.3633 0.5163 -0.8886 32 1 -0.3633 -1.0277 -0.0028 33 1 3.1325 1.4397 -0.0028 34 1 1.6778 1.9569 -0.8886 35 1 1.6824 1.9553 0.8913 36 1 1.6356 -0.2475 2.1399 37 1 3.1307 -0.6824 1.2742 38 1 0.4989 -2.2315 1.2224 39 1 1.9932 -2.7252 2.0551 40 1 0.5104 -4.2746 -0.2669 41 1 1.8930 -4.8124 0.7167 42 1 1.2933 -6.7165 -1.0942 43 1 1.1600 -8.5385 -2.4268 44 1 0.7361 -7.6236 -3.8901 45 1 1.6856 -9.4025 -4.9405 46 1 3.2108 -8.5496 -4.5618 47 1 1.9350 -10.2376 -2.4294 48 1 2.7566 -11.0742 -3.7537 49 1 4.1851 -10.7689 -1.8317 50 1 4.7937 -9.8887 -3.2598 51 1 2.3727 -11.4615 0.1367 52 1 4.4433 -7.5577 -3.4135 53 1 4.4025 -6.6625 -1.8964 54 1 1.6454 -0.2383 -2.1388 55 1 3.1309 -0.6893 -1.2677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034315118.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:30 Heat of formation + Delta-G solvation = -93.103997 kcal Electronic energy + Delta-G solvation = -31737.465766 eV Core-core repulsion = 27773.610788 eV Total energy + Delta-G solvation = -3963.854978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.24031 -40.44006 -39.15635 -36.28841 -35.70914 -34.71409 -34.13716 -32.85595 -31.75667 -30.26149 -28.16372 -27.92739 -26.95451 -25.89176 -25.05631 -24.50557 -22.67496 -21.74571 -20.84547 -20.67784 -19.80252 -18.53408 -17.82706 -17.43915 -17.17056 -16.81110 -16.44717 -16.17891 -15.93456 -15.85597 -15.51453 -15.20161 -15.05677 -14.99530 -14.44904 -14.10385 -14.01616 -13.69033 -13.52732 -13.39628 -13.23624 -13.17953 -13.02959 -12.91048 -12.81919 -12.74954 -12.61600 -12.46383 -12.33551 -12.26944 -11.93740 -11.86821 -11.77659 -11.74407 -11.35296 -11.28587 -11.12690 -11.10632 -10.91510 -10.62833 -10.41972 -10.18985 -9.84972 -8.56341 -7.77010 -5.16810 1.48604 1.53653 1.57979 1.87457 2.46844 2.57033 2.88076 3.35695 3.63715 3.68687 3.78999 3.80559 3.85160 3.99416 4.07516 4.17951 4.18882 4.29424 4.41420 4.45834 4.55050 4.57490 4.62833 4.64024 4.67149 4.71645 4.75928 4.81128 4.83491 4.87193 4.89947 4.93451 4.96911 5.03691 5.05627 5.08531 5.14875 5.23315 5.23866 5.31453 5.33474 5.37734 5.40705 5.49318 5.54986 5.61790 5.71611 5.81645 5.84252 6.23913 6.38754 6.45990 6.81427 7.23207 7.49091 7.95018 8.46564 9.26511 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003023 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.860990 B = 9260.308813 C =10524.705429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.110 4.110 5 C -0.146 4.146 6 C 0.110 3.890 7 H 0.039 0.961 8 C -0.130 4.130 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.705 5.705 12 C 0.127 3.873 13 H 0.067 0.933 14 C -0.099 4.099 15 C -0.105 4.105 16 C -0.121 4.121 17 C 0.166 3.834 18 N -0.592 5.592 19 C -0.247 4.247 20 H 0.051 0.949 21 C -0.033 4.033 22 N -0.911 5.911 23 Si 0.948 3.052 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.293 1.293 27 C 0.158 3.842 28 O -0.385 6.385 29 C 0.069 3.931 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.403 0.597 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.035 0.965 49 H 0.059 0.941 50 H 0.016 0.984 51 H 0.247 0.753 52 H 0.040 0.960 53 H 0.010 0.990 54 H 0.093 0.907 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 17.353 0.654 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.184 4.184 6 C 0.052 3.948 7 H 0.057 0.943 8 C -0.170 4.170 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.354 5.354 12 C 0.019 3.981 13 H 0.085 0.915 14 C -0.137 4.137 15 C -0.143 4.143 16 C -0.159 4.159 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.377 4.377 20 H 0.068 0.932 21 C -0.229 4.229 22 N -0.556 5.556 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.028 3.972 28 O -0.305 6.305 29 C -0.008 4.008 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.238 0.762 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.034 0.966 51 H 0.057 0.943 52 H 0.058 0.942 53 H 0.028 0.972 54 H 0.111 0.889 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.940 17.534 0.074 18.513 hybrid contribution 0.366 -0.663 1.337 1.537 sum -5.574 16.871 1.412 17.824 Atomic orbital electron populations 1.21780 0.93409 1.01896 1.01971 1.21196 0.97139 0.96344 0.95235 1.21767 1.00921 0.93931 1.02755 1.21672 1.00582 0.94515 0.97979 1.22237 1.02658 0.96725 0.96776 1.21716 0.96702 0.89680 0.86696 0.94307 1.21778 1.03582 0.94690 0.96946 1.20993 0.80904 0.81522 0.87033 1.90628 1.38392 1.65166 1.52211 1.46004 1.48646 1.11953 1.28776 1.22483 0.95393 0.93327 0.86936 0.91523 1.21537 0.97251 0.95433 0.99439 1.20941 0.99839 0.96347 0.97163 1.20813 1.01004 0.96357 0.97763 1.20117 0.94352 0.88513 0.92700 1.44269 1.84445 1.00736 1.01951 1.19119 1.35738 1.00305 0.82584 0.93158 1.25339 0.98346 0.99140 1.00086 1.70086 1.36334 1.12698 1.36517 0.85645 0.77352 0.76740 0.82418 1.20389 1.22180 1.22009 1.20726 0.93959 0.87959 0.94556 1.87931 1.73541 1.22870 1.46120 1.22693 0.97871 0.81767 0.98486 0.91616 0.92672 0.92933 0.92728 0.91987 0.91240 0.89769 0.92280 0.89912 0.89780 0.86631 0.86217 0.76195 0.92536 0.92072 0.90601 0.92225 0.90863 0.94671 0.92265 0.96622 0.94335 0.94152 0.97197 0.88924 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.08 71.98 0.58 -1.56 16 2 C -0.10 -1.70 0.77 -52.09 -0.04 -1.74 16 3 C -0.14 -1.84 8.49 71.98 0.61 -1.23 16 4 C -0.11 -1.86 4.81 30.71 0.15 -1.71 16 5 C -0.15 -2.79 5.05 30.68 0.16 -2.64 16 6 C 0.11 2.92 2.19 30.63 0.07 2.99 16 7 H 0.04 1.21 7.95 -2.39 -0.02 1.19 16 8 C -0.13 -3.50 5.41 29.85 0.16 -3.34 16 9 C 0.51 18.27 7.54 87.66 0.66 18.93 16 10 O -0.58 -25.21 15.09 10.68 0.16 -25.05 16 11 N -0.70 -25.33 5.09 -436.51 -2.22 -27.55 16 12 C 0.13 4.81 2.91 46.27 0.13 4.94 16 13 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 14 C -0.10 -3.45 5.23 30.29 0.16 -3.29 16 15 C -0.11 -3.57 5.75 29.51 0.17 -3.40 16 16 C -0.12 -4.90 5.02 28.35 0.14 -4.76 16 17 C 0.17 7.59 5.25 83.58 0.44 8.03 16 18 N -0.59 -28.25 2.60 -707.82 -1.84 -30.09 16 19 C -0.25 -12.83 9.63 84.03 0.81 -12.02 16 20 H 0.05 2.70 7.89 -2.91 -0.02 2.67 16 21 C -0.03 -1.69 4.91 84.86 0.42 -1.27 16 22 N -0.91 -48.11 9.42 21.65 0.20 -47.90 16 23 Si 0.95 42.81 29.60 68.60 2.03 44.84 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 C 0.16 6.82 4.78 87.60 0.42 7.24 16 28 O -0.39 -11.25 9.06 -135.27 -1.23 -12.48 16 29 C 0.07 1.59 5.54 72.01 0.40 1.99 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.98 6.14 -2.39 -0.01 0.96 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.46 6.63 -2.39 -0.02 1.44 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.40 13.81 8.44 -92.71 -0.78 13.03 16 43 H 0.06 2.28 6.59 -2.38 -0.02 2.26 16 44 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.06 2.01 6.30 -2.39 -0.02 2.00 16 47 H 0.07 3.44 5.29 -2.39 -0.01 3.43 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.06 3.05 6.05 -2.38 -0.01 3.04 16 50 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 51 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 52 H 0.04 1.67 6.90 -2.38 -0.02 1.65 16 53 H 0.01 0.47 7.83 -2.39 -0.02 0.45 16 54 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 55 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -61.91 405.68 2.61 -59.30 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.07 Total: 31.78 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.43 Total: 7.15 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.86 Total: -105.55 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.06 Total: -37.53 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.91 2.61 -59.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034315118.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.804 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds