Wall clock time and date at job start Tue Mar 31 2020 21:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99744 * 2 1 4 4 O 1.21287 * 119.99534 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00151 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47119 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47478 * 305.00177 * 6 5 3 8 8 C 1.53002 * 109.47325 * 65.00079 * 6 5 3 9 9 C 1.52998 * 109.47376 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46908 * 299.99459 * 9 8 6 11 11 C 1.53008 * 109.46743 * 60.00398 * 10 9 8 12 12 C 1.53003 * 109.47050 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47352 * 59.99964 * 11 10 9 14 14 C 1.52994 * 109.47322 * 184.99866 * 6 5 3 15 15 C 1.46504 * 120.00016 * 179.97438 * 2 1 3 16 16 H 1.08995 * 110.88280 * 183.88168 * 15 2 1 17 17 C 1.54907 * 111.03817 * 307.78354 * 15 2 1 18 18 N 1.47430 * 104.83058 * 155.09659 * 17 15 2 19 19 C 1.36940 * 125.64664 * 155.82876 * 18 17 15 20 20 H 1.08005 * 119.99763 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00144 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99559 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00361 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47170 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47366 * 119.99667 * 23 21 19 26 26 H 1.48503 * 109.47350 * 239.99982 * 23 21 19 27 27 C 1.47014 * 108.70471 * 335.87277 * 18 17 15 28 28 C 1.54331 * 107.26998 * 1.05754 * 27 18 17 29 29 H 1.09000 * 110.87198 * 263.75468 * 28 27 18 30 30 O 1.42903 * 110.71518 * 140.55636 * 28 27 18 31 31 H 1.09004 * 109.47008 * 269.99644 * 1 2 3 32 32 H 1.08994 * 109.47201 * 30.00372 * 1 2 3 33 33 H 1.09003 * 109.47004 * 150.00502 * 1 2 3 34 34 H 1.09001 * 109.47056 * 299.99880 * 5 3 2 35 35 H 1.08996 * 109.47212 * 60.00561 * 5 3 2 36 36 H 1.09004 * 109.46895 * 299.99872 * 8 6 5 37 37 H 1.08996 * 109.47383 * 59.99604 * 8 6 5 38 38 H 1.09002 * 109.47436 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.47507 * 59.99289 * 9 8 6 40 40 H 1.08997 * 109.47620 * 300.00791 * 10 9 8 41 41 H 1.08995 * 109.47566 * 179.97438 * 10 9 8 42 42 H 1.08994 * 109.47172 * 179.97438 * 12 11 10 43 43 H 1.08999 * 109.46934 * 300.00110 * 12 11 10 44 44 H 1.09003 * 109.47307 * 59.99584 * 12 11 10 45 45 H 1.08999 * 109.46518 * 300.00079 * 13 11 10 46 46 H 1.08999 * 109.46797 * 59.99789 * 13 11 10 47 47 H 1.09002 * 109.47039 * 180.02562 * 13 11 10 48 48 H 1.08996 * 109.47484 * 300.00034 * 14 6 5 49 49 H 1.09009 * 109.47407 * 59.99970 * 14 6 5 50 50 H 1.08997 * 110.36868 * 273.93805 * 17 15 2 51 51 H 1.09003 * 110.36403 * 36.15108 * 17 15 2 52 52 H 0.97002 * 119.99723 * 179.97438 * 22 21 19 53 53 H 1.08999 * 109.88743 * 241.64099 * 27 18 17 54 54 H 1.08997 * 109.88268 * 120.47140 * 27 18 17 55 55 H 0.96700 * 114.00311 * 66.48015 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 1 3.0637 3.5287 0.8407 8 6 3.1743 3.6262 -1.3085 9 6 4.1690 4.7887 -1.3087 10 6 3.4086 6.1105 -1.1834 11 6 2.6138 6.1196 0.1240 12 6 1.8529 7.4410 0.2491 13 6 3.5740 5.9695 1.3057 14 6 1.6188 4.9567 0.1240 15 6 2.1975 -1.2688 0.0006 16 1 3.2717 -1.0972 0.0694 17 6 1.7084 -2.1928 1.1437 18 7 2.0280 -3.5580 0.6882 19 6 2.2201 -4.6452 1.4984 20 1 2.1409 -4.5404 2.5704 21 6 2.5177 -5.8815 0.9420 22 7 2.6148 -6.0090 -0.3644 23 14 2.7805 -7.3643 2.0472 24 1 2.6178 -6.9589 3.4665 25 1 1.7832 -8.4129 1.7141 26 1 4.1499 -7.8999 1.8398 27 6 2.1074 -3.5588 -0.7798 28 6 1.8483 -2.1130 -1.2534 29 1 0.8032 -1.9768 -1.5314 30 8 2.7077 -1.7769 -2.3446 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8901 -0.5138 34 1 0.7590 2.5298 -0.8908 35 1 0.7584 2.5302 0.8892 36 1 3.7164 2.6847 -1.3976 37 1 2.4903 3.7326 -2.1503 38 1 4.7356 4.7820 -2.2399 39 1 4.8530 4.6819 -0.4669 40 1 2.7244 6.2174 -2.0251 41 1 4.1171 6.9387 -1.1831 42 1 1.2863 7.4473 1.1802 43 1 2.5611 8.2695 0.2487 44 1 1.1687 7.5475 -0.5928 45 1 4.1157 5.0279 1.2163 46 1 4.2826 6.7978 1.3054 47 1 3.0077 5.9756 2.2371 48 1 0.9347 5.0632 -0.7178 49 1 1.0525 4.9632 1.0554 50 1 2.2403 -1.9669 2.0679 51 1 0.6338 -2.0811 1.2882 52 1 2.8231 -6.8729 -0.7532 53 1 1.3495 -4.2252 -1.1917 54 1 3.0991 -3.8808 -1.0973 55 1 2.5308 -2.2769 -3.1531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047596302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:34 Heat of formation + Delta-G solvation = -102.147864 kcal Electronic energy + Delta-G solvation = -31266.358373 eV Core-core repulsion = 27302.111223 eV Total energy + Delta-G solvation = -3964.247149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48011 -40.37126 -39.23928 -36.74402 -36.28135 -34.81468 -33.84943 -32.80409 -30.57603 -29.24763 -28.22194 -28.10377 -27.62184 -27.08897 -26.10502 -23.07945 -22.41417 -22.27022 -21.18733 -19.97075 -19.31353 -19.02233 -18.56971 -17.71400 -17.27885 -16.65081 -16.52303 -16.07020 -15.79713 -15.68722 -15.51562 -15.10329 -14.73064 -14.64423 -14.51263 -14.28917 -14.01527 -13.96601 -13.71126 -13.59979 -13.30793 -13.19941 -13.10142 -12.98475 -12.78256 -12.70485 -12.65400 -12.60128 -12.55532 -12.23344 -12.06021 -12.04608 -11.90125 -11.76262 -11.62788 -11.55784 -11.14375 -11.00917 -10.94077 -10.80190 -10.75691 -10.44675 -9.60981 -8.97939 -7.90157 -5.28247 1.44522 1.46362 1.56452 1.70959 1.96544 2.46590 3.12847 3.31224 3.57324 3.62049 3.72261 3.78920 3.85753 3.94903 4.06010 4.09062 4.13862 4.27151 4.33409 4.36768 4.44444 4.48135 4.53435 4.54265 4.61518 4.69283 4.70697 4.78396 4.81176 4.84641 4.88024 4.92246 4.95981 5.01723 5.06322 5.08524 5.14431 5.16534 5.22570 5.27326 5.34826 5.36567 5.41081 5.42726 5.52527 5.57101 5.59410 5.63321 5.64137 5.73727 6.10834 6.49705 6.82742 7.01810 7.27912 7.67067 8.29923 9.19798 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.002291 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.562982 B =12217.810087 C =12418.873933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.604 5.604 3 C 0.504 3.496 4 O -0.582 6.582 5 C -0.124 4.124 6 C -0.069 4.069 7 H 0.057 0.943 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.102 4.102 11 C -0.065 4.065 12 C -0.137 4.137 13 C -0.146 4.146 14 C -0.096 4.096 15 C 0.146 3.854 16 H 0.071 0.929 17 C 0.135 3.865 18 N -0.622 5.622 19 C -0.244 4.244 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.295 1.295 27 C 0.165 3.835 28 C 0.083 3.917 29 H 0.087 0.913 30 O -0.572 6.572 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.039 0.961 51 H 0.053 0.947 52 H 0.248 0.752 53 H 0.024 0.976 54 H 0.015 0.985 55 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 26.559 -1.684 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.295 3.705 4 O -0.462 6.462 5 C -0.163 4.163 6 C -0.088 4.088 7 H 0.075 0.925 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.139 4.139 11 C -0.065 4.065 12 C -0.194 4.194 13 C -0.203 4.203 14 C -0.133 4.133 15 C 0.040 3.960 16 H 0.090 0.910 17 C 0.009 3.991 18 N -0.350 5.350 19 C -0.373 4.373 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.214 1.214 26 H -0.222 1.222 27 C 0.039 3.961 28 C 0.022 3.978 29 H 0.104 0.896 30 O -0.379 6.379 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.058 0.942 53 H 0.042 0.958 54 H 0.033 0.967 55 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.581 26.784 -1.252 27.864 hybrid contribution 0.589 -2.087 -0.103 2.171 sum -6.992 24.697 -1.356 25.703 Atomic orbital electron populations 1.22125 0.77026 1.04730 1.03596 1.47868 1.08386 1.04379 1.72973 1.21608 0.87921 0.86453 0.74520 1.90658 1.16469 1.87785 1.51271 1.21843 0.99071 0.89032 1.06364 1.20911 0.96117 0.93688 0.98071 0.92467 1.21617 0.98246 0.98203 0.97343 1.21526 0.97932 0.95216 1.00979 1.21570 0.98732 0.96289 0.97346 1.20539 0.95381 0.95671 0.94866 1.21821 0.99905 0.95524 1.02144 1.21976 0.99250 1.01242 0.97838 1.21623 0.97060 0.91738 1.02872 1.21805 0.96828 0.83364 0.93985 0.91027 1.21867 0.98581 0.83676 0.94993 1.44529 1.83323 1.04670 1.02437 1.19505 1.40850 0.86807 0.90105 0.89598 1.25708 1.01998 1.00634 0.97511 1.70163 1.55835 1.23624 1.10305 0.84953 0.76767 0.78888 0.78355 1.18847 1.21424 1.22189 1.21566 0.98555 0.91998 0.84014 1.23352 0.93518 0.93948 0.86935 0.89580 1.86481 1.61167 1.66459 1.23786 0.90718 0.87529 0.91094 0.86533 0.86290 0.93832 0.91895 0.92654 0.93083 0.91392 0.91895 0.92213 0.92655 0.92053 0.93584 0.92708 0.92426 0.90572 0.90779 0.94232 0.92916 0.94226 0.95781 0.96680 0.75973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.85 127.77 1.13 2.38 16 2 N -0.60 -17.63 2.91 -814.84 -2.37 -20.00 16 3 C 0.50 14.98 7.39 87.66 0.65 15.63 16 4 O -0.58 -23.15 13.35 -3.05 -0.04 -23.19 16 5 C -0.12 -2.23 3.73 29.85 0.11 -2.12 16 6 C -0.07 -1.34 1.56 -10.80 -0.02 -1.36 16 7 H 0.06 1.41 6.24 -2.39 -0.01 1.39 16 8 C -0.12 -2.66 4.94 30.59 0.15 -2.51 16 9 C -0.12 -2.40 5.65 30.59 0.17 -2.23 16 10 C -0.10 -1.53 4.73 30.60 0.14 -1.38 16 11 C -0.06 -0.88 0.77 -52.16 -0.04 -0.92 16 12 C -0.14 -1.42 8.47 71.98 0.61 -0.81 16 13 C -0.15 -2.29 7.78 71.98 0.56 -1.73 16 14 C -0.10 -1.26 4.01 30.61 0.12 -1.14 16 15 C 0.15 5.71 3.17 46.38 0.15 5.86 16 16 H 0.07 3.43 7.02 -2.39 -0.02 3.41 16 17 C 0.14 5.63 6.79 86.85 0.59 6.22 16 18 N -0.62 -32.44 3.39 -691.99 -2.35 -34.79 16 19 C -0.24 -13.78 10.28 84.03 0.86 -12.92 16 20 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 21 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 22 N -0.95 -57.27 10.31 21.65 0.22 -57.04 16 23 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C 0.16 8.24 5.15 86.73 0.45 8.69 16 28 C 0.08 3.22 3.89 31.78 0.12 3.35 16 29 H 0.09 2.83 6.40 -2.39 -0.02 2.81 16 30 O -0.57 -21.84 13.39 -148.98 -1.99 -23.83 16 31 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 32 H 0.11 1.21 6.44 -2.39 -0.02 1.20 16 33 H 0.07 1.41 6.41 -2.39 -0.02 1.40 16 34 H 0.12 1.53 7.40 -2.39 -0.02 1.52 16 35 H 0.12 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.04 1.36 5.95 -2.39 -0.01 1.35 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.15 6.43 -2.39 -0.02 1.14 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 0.91 4.81 -2.39 -0.01 0.89 16 46 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.05 1.94 7.00 -2.39 -0.02 1.92 16 52 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 53 H 0.02 1.29 7.51 -2.39 -0.02 1.27 16 54 H 0.01 0.87 7.29 -2.39 -0.02 0.86 16 55 H 0.39 11.40 9.12 -74.06 -0.68 10.73 16 Total: -1.00 -76.22 404.95 1.92 -74.31 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.19 Total: 24.87 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.23 Total: 11.72 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.50 Total: -111.84 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -2.04 Total: -47.03 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.22 1.92 -74.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047596302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.842 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds