Wall clock time and date at job start Tue Mar 31 2020 21:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46567 * 2 1 4 4 C 1.52998 * 109.47060 * 240.00561 * 2 1 3 5 5 C 1.53006 * 109.46951 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47337 * 59.99257 * 5 4 2 7 7 C 1.52998 * 109.47706 * 300.00281 * 6 5 4 8 8 C 1.52995 * 109.47337 * 119.99751 * 2 1 3 9 9 H 1.09004 * 109.46976 * 60.00303 * 8 2 1 10 10 C 1.50696 * 109.47620 * 300.00452 * 8 2 1 11 11 O 1.21278 * 119.99778 * 359.97438 * 10 8 2 12 12 N 1.34781 * 120.00259 * 180.02562 * 10 8 2 13 13 C 1.46500 * 119.99950 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46849 * 179.97438 * 13 12 10 15 15 H 1.08991 * 109.33911 * 304.79761 * 14 13 12 16 16 C 1.54294 * 109.40430 * 184.99399 * 14 13 12 17 17 N 1.48177 * 110.69554 * 200.49393 * 16 14 13 18 18 C 1.36938 * 118.51403 * 138.77524 * 17 16 14 19 19 H 1.07997 * 119.99687 * 206.11519 * 18 17 16 20 20 C 1.38811 * 119.99926 * 26.11990 * 18 17 16 21 21 N 1.31617 * 120.00237 * 15.51352 * 20 18 17 22 22 Si 1.86803 * 119.99779 * 195.51764 * 20 18 17 23 23 H 1.48500 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46870 * 119.99406 * 22 20 18 25 25 H 1.48495 * 109.47134 * 239.99438 * 22 20 18 26 26 C 1.44459 * 122.97125 * 318.75189 * 17 16 14 27 27 C 1.54876 * 109.33064 * 88.95989 * 26 17 16 28 28 C 1.47684 * 109.67598 * 290.10376 * 27 26 17 29 29 O 1.40526 * 109.40415 * 64.59515 * 14 13 12 30 30 H 1.09004 * 109.47097 * 299.99286 * 1 2 3 31 31 H 1.08997 * 109.47543 * 59.99765 * 1 2 3 32 32 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46712 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47767 * 299.99999 * 3 2 1 35 35 H 1.09004 * 109.47164 * 60.00978 * 3 2 1 36 36 H 1.09004 * 109.46812 * 299.99426 * 4 2 1 37 37 H 1.08997 * 109.47209 * 59.99469 * 4 2 1 38 38 H 1.08994 * 109.47006 * 180.02562 * 5 4 2 39 39 H 1.08999 * 109.46533 * 299.99316 * 5 4 2 40 40 H 1.09008 * 109.46728 * 60.00613 * 6 5 4 41 41 H 1.08998 * 109.47139 * 179.97438 * 6 5 4 42 42 H 1.08999 * 109.46944 * 300.00418 * 7 6 5 43 43 H 1.08997 * 109.47209 * 179.97438 * 7 6 5 44 44 H 0.97000 * 119.99431 * 359.97438 * 12 10 8 45 45 H 1.08995 * 109.47417 * 59.99223 * 13 12 10 46 46 H 1.09004 * 109.46825 * 299.99581 * 13 12 10 47 47 H 1.08996 * 109.23401 * 320.81041 * 16 14 13 48 48 H 1.09003 * 109.23017 * 80.17854 * 16 14 13 49 49 H 0.96997 * 119.99909 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.49693 * 208.91794 * 26 17 16 51 51 H 1.09004 * 109.49346 * 329.00281 * 26 17 16 52 52 H 1.09003 * 109.43186 * 50.16348 * 27 26 17 53 53 H 1.08992 * 109.43724 * 170.08355 * 27 26 17 54 54 H 1.09003 * 108.64385 * 181.88084 * 28 27 26 55 55 H 1.08997 * 108.64476 * 299.85116 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5700 -0.7205 -1.2496 6 6 4.0805 -1.4413 -0.0004 7 6 3.5706 -0.7202 1.2489 8 6 2.0400 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 6 1.5377 -0.0109 2.4797 11 8 0.8407 0.9754 2.3685 12 7 1.8638 -0.4711 3.7038 13 6 1.3749 0.2192 4.9000 14 6 1.8852 -0.5020 6.1492 15 1 1.5931 -1.5511 6.1049 16 6 1.2687 0.1492 7.4048 17 7 2.0759 -0.1642 8.6072 18 6 2.2955 0.8288 9.5242 19 1 3.1717 0.7972 10.1548 20 6 1.3919 1.8757 9.6433 21 7 0.1915 1.7725 9.1136 22 14 1.8798 3.4313 10.5552 23 1 3.2727 3.2976 11.0523 24 1 1.7929 4.5929 9.6341 25 1 0.9617 3.6405 11.7035 26 6 2.6414 -1.4701 8.8560 27 6 4.0457 -1.5526 8.2081 28 6 3.9143 -1.5729 6.7373 29 8 3.2863 -0.4093 6.2023 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2493 37 1 1.6765 -0.2073 -2.1392 38 1 3.9333 -1.2339 -2.1398 39 1 3.9328 0.3073 -1.2498 40 1 3.7176 -2.4692 -0.0002 41 1 5.1705 -1.4413 -0.0009 42 1 3.9334 0.3076 1.2487 43 1 3.9340 -1.2341 2.1388 44 1 2.4215 -1.2597 3.7927 45 1 0.2850 0.2184 4.9001 46 1 1.7375 1.2472 4.8999 47 1 1.2330 1.2300 7.2680 48 1 0.2555 -0.2279 7.5442 49 1 -0.4398 2.5042 9.1965 50 1 2.7266 -1.6308 9.9308 51 1 1.9957 -2.2344 8.4236 52 1 4.6348 -0.6858 8.5077 53 1 4.5451 -2.4629 8.5396 54 1 4.9084 -1.6649 6.2998 55 1 3.3269 -2.4456 6.4519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073904345.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:34 Heat of formation + Delta-G solvation = -95.193896 kcal Electronic energy + Delta-G solvation = -31794.694009 eV Core-core repulsion = 27830.748406 eV Total energy + Delta-G solvation = -3963.945603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.80122 -40.42590 -38.95240 -36.88896 -36.05496 -34.29967 -33.79030 -33.02010 -32.01324 -30.22443 -28.27395 -27.78134 -27.06373 -26.75872 -24.62118 -23.83386 -22.37269 -22.01610 -21.62566 -21.13778 -19.44117 -18.81378 -18.02431 -17.75628 -17.18728 -16.79427 -16.35347 -16.26092 -15.90232 -15.60956 -15.49570 -15.30455 -15.22111 -14.86668 -14.54418 -14.23308 -14.14946 -13.94622 -13.85728 -13.79691 -13.42853 -13.32820 -13.03670 -12.80016 -12.77865 -12.58560 -12.41129 -12.34465 -12.31092 -12.17485 -12.00597 -11.98780 -11.82003 -11.74782 -11.51965 -11.42389 -11.35944 -11.01548 -10.89871 -10.58970 -10.35374 -10.17192 -10.01535 -8.68252 -7.87023 -5.31857 1.41843 1.45301 1.54196 1.70596 2.20532 2.50532 2.92582 3.26884 3.56792 3.59928 3.73423 3.77567 4.04180 4.11665 4.15407 4.20159 4.24221 4.27586 4.35811 4.42450 4.46192 4.46947 4.54755 4.58271 4.58713 4.63022 4.77303 4.79253 4.87670 4.88131 4.88764 4.92126 5.02382 5.10650 5.14637 5.16925 5.18158 5.21856 5.24864 5.26343 5.28447 5.35650 5.41864 5.48197 5.49749 5.51898 5.60931 5.67166 5.70279 5.75045 6.38724 6.57954 6.62551 7.16166 7.35712 7.92613 8.30065 9.17716 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002838 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.064996 B = 9862.246180 C =10773.775110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.088 4.088 9 H 0.115 0.885 10 C 0.509 3.491 11 O -0.569 6.569 12 N -0.710 5.710 13 C 0.138 3.862 14 C 0.079 3.921 15 H 0.073 0.927 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.258 4.258 19 H 0.062 0.938 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.147 3.853 27 C -0.170 4.170 28 C 0.068 3.932 29 O -0.377 6.377 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.411 0.589 45 H 0.069 0.931 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.010 0.990 49 H 0.248 0.752 50 H 0.041 0.959 51 H 0.045 0.955 52 H 0.042 0.958 53 H 0.097 0.903 54 H 0.097 0.903 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -12.766 -20.985 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.040 4.040 3 C -0.210 4.210 4 C -0.140 4.140 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.109 4.109 9 H 0.133 0.867 10 C 0.297 3.703 11 O -0.449 6.449 12 N -0.362 5.362 13 C 0.013 3.987 14 C 0.019 3.981 15 H 0.091 0.909 16 C 0.048 3.952 17 N -0.325 5.325 18 C -0.389 4.389 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.021 3.979 27 C -0.210 4.210 28 C -0.008 4.008 29 O -0.296 6.296 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.247 0.753 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.115 0.885 54 H 0.115 0.885 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.435 -11.828 -21.102 25.308 hybrid contribution -0.254 1.027 1.259 1.645 sum 7.182 -10.801 -19.842 23.706 Atomic orbital electron populations 1.22067 0.95084 1.01605 1.02236 1.20254 0.95099 0.95021 0.93665 1.22142 1.00769 0.96262 1.01856 1.21586 0.95944 1.00568 0.95919 1.21614 0.95154 1.00921 0.98389 1.21498 1.00844 0.99587 0.92921 1.21594 0.91696 1.01537 1.00083 1.21421 0.97898 1.00742 0.90814 0.86742 1.21329 0.79396 0.84307 0.85256 1.90590 1.39529 1.27981 1.86776 1.45868 1.53415 1.32156 1.04780 1.21131 0.98307 0.95907 0.83344 1.22717 0.82587 0.99115 0.93717 0.90883 1.21358 0.91285 0.98582 0.84001 1.43829 1.61053 1.07538 1.20111 1.19469 1.03002 1.02246 1.14175 0.92058 1.25689 0.94908 1.02680 1.01197 1.70182 1.05154 1.32009 1.50664 0.85330 0.77908 0.80264 0.77716 1.19268 1.22190 1.21706 1.20920 0.92918 0.86033 0.98069 1.22146 0.99366 1.01909 0.97608 1.21596 0.98584 0.86817 0.93798 1.87458 1.18045 1.41788 1.82294 0.92762 0.92707 0.92408 0.92232 0.92953 0.93105 0.90824 0.91556 0.90626 0.92386 0.90478 0.90837 0.92616 0.90559 0.75250 0.91274 0.93731 0.94101 0.97207 0.94311 0.94076 0.93651 0.93951 0.88467 0.88506 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.18 71.98 0.59 -2.74 16 2 C -0.04 -0.77 0.51 -52.18 -0.03 -0.79 16 3 C -0.15 -3.52 7.48 71.98 0.54 -2.98 16 4 C -0.10 -1.39 4.73 30.60 0.14 -1.25 16 5 C -0.12 -1.45 5.65 30.59 0.17 -1.28 16 6 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 7 C -0.11 -1.73 4.83 30.61 0.15 -1.58 16 8 C -0.09 -1.64 1.85 -11.52 -0.02 -1.66 16 9 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 10 C 0.51 13.88 6.57 87.65 0.58 14.46 16 11 O -0.57 -20.21 11.35 -3.02 -0.03 -20.24 16 12 N -0.71 -18.72 5.38 -463.06 -2.49 -21.21 16 13 C 0.14 4.78 5.24 86.38 0.45 5.23 16 14 C 0.08 2.82 2.35 31.03 0.07 2.89 16 15 H 0.07 2.23 7.20 -2.39 -0.02 2.21 16 16 C 0.17 8.37 4.50 86.50 0.39 8.76 16 17 N -0.60 -29.92 2.59 -696.45 -1.80 -31.72 16 18 C -0.26 -14.40 9.43 84.03 0.79 -13.61 16 19 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 20 C -0.05 -2.84 4.88 84.86 0.41 -2.42 16 21 N -0.93 -56.07 10.98 21.65 0.24 -55.83 16 22 Si 0.96 46.54 29.58 68.60 2.03 48.57 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.15 5.76 5.68 87.40 0.50 6.26 16 27 C -0.17 -5.31 6.04 29.57 0.18 -5.14 16 28 C 0.07 1.86 6.05 70.32 0.43 2.28 16 29 O -0.38 -13.37 9.77 -144.92 -1.42 -14.79 16 30 H 0.05 1.56 5.51 -2.38 -0.01 1.55 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.24 4.81 -2.38 -0.01 1.23 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.54 5.51 -2.38 -0.01 1.52 16 36 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.79 6.43 -2.39 -0.02 0.78 16 40 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 1.07 6.43 -2.39 -0.02 1.05 16 43 H 0.08 1.06 7.56 -2.39 -0.02 1.04 16 44 H 0.41 8.35 7.88 -92.71 -0.73 7.62 16 45 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.04 2.29 6.24 -2.39 -0.01 2.28 16 48 H 0.01 0.52 8.02 -2.39 -0.02 0.50 16 49 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 50 H 0.04 1.65 7.97 -2.38 -0.02 1.63 16 51 H 0.05 1.61 8.10 -2.38 -0.02 1.59 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 54 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 55 H 0.06 1.40 7.27 -2.39 -0.02 1.38 16 Total: -1.00 -70.42 399.93 2.18 -68.25 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.13 Total: 21.59 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.52 Total: 5.38 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -4.06 Total: -108.76 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.45 Total: -35.03 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -70.42 2.18 -68.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904345.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.948 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds