Wall clock time and date at job start Tue Mar 31 2020 21:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 C 1.52992 * 109.47193 * 120.00185 * 2 1 3 5 5 C 1.52999 * 109.47262 * 59.99931 * 4 2 1 6 6 C 1.52998 * 109.47184 * 60.00081 * 5 4 2 7 7 C 1.53005 * 109.47055 * 300.00270 * 6 5 4 8 8 C 1.52997 * 109.47168 * 240.00367 * 2 1 3 9 9 H 1.08995 * 109.47407 * 180.02562 * 8 2 1 10 10 C 1.50698 * 109.47529 * 59.99895 * 8 2 1 11 11 O 1.21278 * 119.99897 * 359.97438 * 10 8 2 12 12 N 1.34773 * 120.00281 * 180.02562 * 10 8 2 13 13 C 1.46500 * 120.00104 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47147 * 179.97438 * 13 12 10 15 15 H 1.09005 * 108.56739 * 60.00076 * 14 13 12 16 16 C 1.46921 * 108.62015 * 177.94613 * 14 13 12 17 17 N 1.50107 * 106.78543 * 178.04687 * 16 14 13 18 18 C 1.36930 * 120.75085 * 111.21537 * 17 16 14 19 19 H 1.08002 * 120.00322 * 155.68977 * 18 17 16 20 20 C 1.38816 * 120.00186 * 335.68792 * 18 17 16 21 21 N 1.31614 * 120.00047 * 340.85737 * 20 18 17 22 22 Si 1.86803 * 119.99796 * 160.85104 * 20 18 17 23 23 H 1.48503 * 109.47349 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47144 * 120.00308 * 22 20 18 25 25 H 1.48500 * 109.47106 * 240.00041 * 22 20 18 26 26 C 1.43423 * 118.60880 * 291.15710 * 17 16 14 27 27 C 1.55325 * 116.24224 * 89.40383 * 26 17 16 28 28 C 1.55185 * 108.87286 * 319.46331 * 27 26 17 29 29 O 1.39643 * 110.56836 * 322.14225 * 28 27 26 30 30 H 1.08989 * 109.47106 * 300.00272 * 1 2 3 31 31 H 1.09007 * 109.46948 * 60.00257 * 1 2 3 32 32 H 1.09003 * 109.46852 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47453 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47222 * 300.00426 * 3 2 1 35 35 H 1.09003 * 109.47248 * 59.99765 * 3 2 1 36 36 H 1.08997 * 109.47562 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47042 * 300.00358 * 4 2 1 38 38 H 1.09000 * 109.47326 * 180.02562 * 5 4 2 39 39 H 1.09009 * 109.47316 * 300.00294 * 5 4 2 40 40 H 1.08994 * 109.47729 * 180.02562 * 6 5 4 41 41 H 1.08999 * 109.46694 * 59.99819 * 6 5 4 42 42 H 1.08997 * 109.46636 * 299.99746 * 7 6 5 43 43 H 1.09003 * 109.46782 * 179.97438 * 7 6 5 44 44 H 0.97003 * 120.00077 * 359.97438 * 12 10 8 45 45 H 1.08997 * 109.47509 * 299.99847 * 13 12 10 46 46 H 1.09001 * 109.47211 * 60.00244 * 13 12 10 47 47 H 1.09002 * 109.99048 * 297.23752 * 16 14 13 48 48 H 1.08993 * 109.99257 * 58.60201 * 16 14 13 49 49 H 0.97000 * 120.00027 * 180.02562 * 21 20 18 50 50 H 1.08996 * 108.12525 * 327.63996 * 26 17 16 51 51 H 1.09008 * 107.96044 * 211.03566 * 26 17 16 52 52 H 1.09001 * 109.56883 * 199.64482 * 27 26 17 53 53 H 1.09002 * 109.67251 * 79.33768 * 27 26 17 54 54 H 1.09000 * 109.25685 * 201.86202 * 28 27 26 55 55 H 1.09000 * 109.25897 * 82.42619 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5301 -2.1637 1.2491 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1637 -1.2494 8 6 2.0401 -0.7212 -1.2493 9 1 3.1300 -0.7216 -1.2491 10 6 1.5378 -0.0108 -2.4797 11 8 0.8401 0.9750 -2.3685 12 7 1.8630 -0.4715 -3.7038 13 6 1.3742 0.2188 -4.9000 14 6 1.8843 -0.5023 -6.1492 15 1 1.5133 -1.5272 -6.1342 16 6 1.3436 0.1750 -7.3356 17 7 1.9066 -0.5331 -8.5334 18 6 1.0993 -1.2813 -9.3479 19 1 1.3823 -1.4565 -10.3754 20 6 -0.0829 -1.8148 -8.8531 21 7 -0.2570 -1.9365 -7.5542 22 14 -1.4266 -2.3596 -10.0308 23 1 -0.9872 -2.1191 -11.4287 24 1 -1.6956 -3.8074 -9.8391 25 1 -2.6651 -1.5861 -9.7607 26 6 3.3088 -0.4089 -8.8084 27 6 4.2349 -1.4648 -8.1450 28 6 3.7452 -1.7218 -6.6950 29 8 3.3071 -0.5333 -6.1072 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -0.2075 2.1392 38 1 1.8930 -2.6775 2.1393 39 1 0.4400 -2.1638 1.2491 40 1 1.6764 -3.9125 -0.0004 41 1 3.1301 -2.8849 0.0000 42 1 0.4401 -2.1637 -1.2493 43 1 1.8938 -2.6773 -2.1393 44 1 2.4207 -1.2601 -3.7928 45 1 0.2842 0.2188 -4.8997 46 1 1.7375 1.2465 -4.9004 47 1 0.2558 0.1053 -7.3411 48 1 1.6509 1.2207 -7.3401 49 1 -1.0829 -2.3097 -7.2085 50 1 3.6322 0.5792 -8.4813 51 1 3.4461 -0.4680 -9.8881 52 1 5.2585 -1.0907 -8.1238 53 1 4.1975 -2.3943 -8.7131 54 1 4.5651 -2.1331 -6.1063 55 1 2.9232 -2.4374 -6.7147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073904347.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:39 Heat of formation + Delta-G solvation = -87.467625 kcal Electronic energy + Delta-G solvation = -32162.848042 eV Core-core repulsion = 28199.237476 eV Total energy + Delta-G solvation = -3963.610566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.79257 -40.65411 -38.92419 -36.80307 -36.01745 -34.12300 -33.69881 -33.06263 -31.93631 -30.21214 -28.26583 -27.78842 -27.07229 -26.69428 -24.60592 -23.86995 -22.41934 -22.00742 -21.36940 -21.19093 -19.44121 -18.90289 -18.00610 -17.68850 -16.97744 -16.67348 -16.34493 -16.16357 -16.02151 -15.62314 -15.44419 -15.35551 -15.20332 -14.84332 -14.70643 -14.30709 -14.10403 -13.94678 -13.83859 -13.53648 -13.40453 -13.29773 -13.00904 -12.77155 -12.68765 -12.54288 -12.49753 -12.34419 -12.27414 -12.15728 -11.99911 -11.93245 -11.80194 -11.72780 -11.50329 -11.37092 -11.18622 -11.02138 -10.90251 -10.57340 -10.35189 -10.16758 -9.93738 -8.72288 -7.90182 -5.30797 1.45770 1.51023 1.58399 1.73657 2.30646 2.51806 3.12033 3.27368 3.50563 3.60016 3.73823 3.78792 4.12674 4.18751 4.21752 4.28247 4.34357 4.37843 4.41985 4.42939 4.46113 4.52884 4.57152 4.59261 4.73672 4.77160 4.79096 4.79495 4.89388 4.91188 4.97637 5.02584 5.07849 5.10665 5.17443 5.17931 5.18484 5.19254 5.24796 5.25701 5.33868 5.34760 5.40219 5.43171 5.47365 5.49207 5.53229 5.67521 5.68287 5.76678 6.35688 6.52160 6.66603 7.10220 7.37317 7.82487 8.35623 9.15834 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.003047 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.695338 B = 9185.709873 C = 9734.982957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.151 4.151 4 C -0.103 4.103 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.088 4.088 9 H 0.109 0.891 10 C 0.509 3.491 11 O -0.569 6.569 12 N -0.710 5.710 13 C 0.135 3.865 14 C 0.082 3.918 15 H 0.084 0.916 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.262 4.262 19 H 0.063 0.937 20 C -0.036 4.036 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.153 3.847 27 C -0.164 4.164 28 C 0.068 3.932 29 O -0.367 6.367 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.407 0.593 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.022 0.978 49 H 0.250 0.750 50 H 0.034 0.966 51 H 0.030 0.970 52 H 0.078 0.922 53 H 0.054 0.946 54 H 0.087 0.913 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -1.720 17.050 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.109 4.109 9 H 0.127 0.873 10 C 0.298 3.702 11 O -0.449 6.449 12 N -0.360 5.360 13 C 0.010 3.990 14 C 0.023 3.977 15 H 0.101 0.899 16 C 0.020 3.980 17 N -0.323 5.323 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.232 4.232 21 N -0.562 5.562 22 Si 0.787 3.213 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.025 3.975 27 C -0.205 4.205 28 C -0.010 4.010 29 O -0.285 6.285 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.242 0.758 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.049 0.951 52 H 0.097 0.903 53 H 0.073 0.927 54 H 0.105 0.895 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.181 -0.912 17.220 18.680 hybrid contribution -0.972 -0.679 -1.256 1.727 sum 6.210 -1.591 15.965 17.204 Atomic orbital electron populations 1.22135 0.95259 1.01537 1.02015 1.20248 0.95551 0.94760 0.93386 1.22056 1.00422 0.96037 1.02347 1.21586 1.00950 0.95447 0.96044 1.21607 1.00913 0.95273 0.98136 1.21502 1.01437 0.98907 0.93074 1.21583 1.00968 0.92594 0.99886 1.21391 1.02253 0.96029 0.91247 0.87333 1.21253 0.79614 0.84199 0.85182 1.90552 1.39439 1.28130 1.86790 1.45903 1.53062 1.31961 1.05122 1.21292 0.97928 0.95858 0.83917 1.21720 0.80548 1.02124 0.93335 0.89857 1.20660 0.99516 0.91925 0.85904 1.44233 1.02895 1.55333 1.29881 1.19428 1.02193 1.25437 0.92159 0.91917 1.25462 1.01502 0.99298 0.96932 1.69997 1.25926 1.48695 1.11618 0.85364 0.79745 0.76936 0.79234 1.19973 1.21986 1.22031 1.20502 0.83765 0.96272 0.96931 1.23487 0.99737 1.00473 0.96818 1.22400 0.98678 0.86376 0.93509 1.87510 1.20676 1.41200 1.79162 0.92690 0.92932 0.92395 0.92666 0.92650 0.92443 0.91015 0.91229 0.90522 0.92212 0.90955 0.90686 0.92405 0.91338 0.75782 0.92442 0.92752 0.90492 0.95951 0.94026 0.94759 0.95120 0.90339 0.92739 0.89508 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 7.48 71.98 0.54 -3.14 16 2 C -0.04 -0.82 0.51 -52.18 -0.03 -0.85 16 3 C -0.15 -3.50 8.18 71.98 0.59 -2.91 16 4 C -0.10 -1.58 4.73 30.59 0.14 -1.43 16 5 C -0.12 -1.69 5.65 30.59 0.17 -1.52 16 6 C -0.11 -1.61 5.92 30.60 0.18 -1.43 16 7 C -0.11 -2.19 4.83 30.60 0.15 -2.04 16 8 C -0.09 -1.94 1.84 -11.54 -0.02 -1.96 16 9 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 10 C 0.51 15.49 6.57 87.66 0.58 16.07 16 11 O -0.57 -20.98 11.35 -3.02 -0.03 -21.02 16 12 N -0.71 -22.20 5.31 -463.07 -2.46 -24.66 16 13 C 0.14 5.07 5.25 86.38 0.45 5.52 16 14 C 0.08 3.32 1.98 28.71 0.06 3.37 16 15 H 0.08 3.84 5.24 -2.38 -0.01 3.83 16 16 C 0.14 6.67 4.71 83.79 0.39 7.06 16 17 N -0.60 -28.96 2.61 -706.03 -1.84 -30.81 16 18 C -0.26 -13.74 9.62 84.04 0.81 -12.94 16 19 H 0.06 3.30 7.87 -2.91 -0.02 3.28 16 20 C -0.04 -1.85 4.93 84.86 0.42 -1.44 16 21 N -0.92 -48.46 9.56 21.65 0.21 -48.25 16 22 Si 0.96 43.17 29.59 68.60 2.03 45.20 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 C 0.15 6.33 5.33 87.75 0.47 6.80 16 27 C -0.16 -5.75 6.75 32.14 0.22 -5.53 16 28 C 0.07 2.38 6.38 72.73 0.46 2.85 16 29 O -0.37 -13.73 9.44 -137.22 -1.30 -15.03 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.63 5.51 -2.38 -0.01 1.62 16 32 H 0.06 1.30 4.81 -2.39 -0.01 1.28 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.65 5.51 -2.39 -0.01 1.64 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.92 6.43 -2.38 -0.02 0.90 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.30 6.43 -2.39 -0.02 1.28 16 43 H 0.07 1.32 7.56 -2.39 -0.02 1.30 16 44 H 0.41 11.33 7.68 -92.71 -0.71 10.61 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 50 H 0.03 1.38 7.98 -2.39 -0.02 1.36 16 51 H 0.03 1.26 7.95 -2.38 -0.02 1.24 16 52 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 53 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 54 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 55 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -58.85 395.93 2.34 -56.51 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.16 Total: 31.58 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.58 Total: 6.48 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.09 Total: -103.72 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.33 Total: -36.05 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -58.85 2.34 -56.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904347.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -58.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds