Wall clock time and date at job start Tue Mar 31 2020 21:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 C 1.52998 * 109.46872 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47159 * 299.99658 * 4 2 1 6 6 C 1.52999 * 109.47130 * 300.00455 * 5 4 2 7 7 C 1.52998 * 109.47471 * 59.99736 * 6 5 4 8 8 C 1.52999 * 109.47151 * 119.99922 * 2 1 3 9 9 H 1.09002 * 109.46976 * 179.97438 * 8 2 1 10 10 C 1.50696 * 109.47111 * 299.99915 * 8 2 1 11 11 O 1.21283 * 120.00433 * 359.97438 * 10 8 2 12 12 N 1.34775 * 119.99912 * 180.02562 * 10 8 2 13 13 C 1.46500 * 120.00299 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47497 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.46624 * 305.00413 * 14 13 12 16 16 C 1.54800 * 109.46923 * 185.00849 * 14 13 12 17 17 N 1.45125 * 109.53636 * 172.10910 * 16 14 13 18 18 C 1.36938 * 118.75735 * 269.28879 * 17 16 14 19 19 H 1.07997 * 120.00167 * 26.08884 * 18 17 16 20 20 C 1.38819 * 119.99726 * 206.08990 * 18 17 16 21 21 N 1.31614 * 120.00068 * 15.47995 * 20 18 17 22 22 Si 1.86799 * 119.99757 * 195.47961 * 20 18 17 23 23 H 1.48502 * 109.47120 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47281 * 120.00216 * 22 20 18 25 25 H 1.48501 * 109.46987 * 239.99995 * 22 20 18 26 26 C 1.47505 * 122.48502 * 89.29358 * 17 16 14 27 27 C 1.53581 * 111.02602 * 318.36783 * 26 17 16 28 28 C 1.51530 * 109.58204 * 320.02797 * 27 26 17 29 29 O 1.38016 * 109.47029 * 64.99676 * 14 13 12 30 30 H 1.09000 * 109.46712 * 300.00046 * 1 2 3 31 31 H 1.09003 * 109.47005 * 59.99758 * 1 2 3 32 32 H 1.08998 * 109.47347 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47142 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47464 * 299.99960 * 3 2 1 35 35 H 1.09000 * 109.47451 * 60.00407 * 3 2 1 36 36 H 1.09003 * 109.47283 * 60.00198 * 4 2 1 37 37 H 1.09008 * 109.47025 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.46970 * 180.02562 * 5 4 2 39 39 H 1.08995 * 109.47065 * 60.00350 * 5 4 2 40 40 H 1.09002 * 109.46976 * 299.99476 * 6 5 4 41 41 H 1.09001 * 109.47129 * 180.02562 * 6 5 4 42 42 H 1.08992 * 109.47340 * 180.02562 * 7 6 5 43 43 H 1.09005 * 109.46945 * 59.99474 * 7 6 5 44 44 H 0.97002 * 119.99963 * 359.97438 * 12 10 8 45 45 H 1.09001 * 109.47015 * 300.00047 * 13 12 10 46 46 H 1.09002 * 109.47370 * 59.99671 * 13 12 10 47 47 H 1.09001 * 109.46472 * 292.12720 * 16 14 13 48 48 H 1.09004 * 109.46459 * 52.09376 * 16 14 13 49 49 H 0.97000 * 120.00187 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.17142 * 197.97369 * 26 17 16 51 51 H 1.08998 * 109.13292 * 78.73949 * 26 17 16 52 52 H 1.08998 * 109.45607 * 199.98663 * 27 26 17 53 53 H 1.09003 * 109.43310 * 80.04692 * 27 26 17 54 54 H 1.09007 * 109.58771 * 331.61061 * 28 27 26 55 55 H 1.09000 * 109.70989 * 211.25037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2490 10 6 1.5377 -0.0108 2.4797 11 8 0.8408 0.9756 2.3685 12 7 1.8637 -0.4710 3.7037 13 6 1.3750 0.2193 4.9000 14 6 1.8851 -0.5019 6.1492 15 1 1.5972 -1.5522 6.1053 16 6 1.2672 0.1503 7.4099 17 7 1.5988 -0.6433 8.5788 18 6 0.7424 -1.6405 8.9627 19 1 0.1007 -2.1119 8.2330 20 6 0.6990 -2.0455 10.2898 21 7 1.2360 -1.2918 11.2257 22 14 -0.1216 -3.6600 10.7472 23 1 -0.6442 -4.3145 9.5209 24 1 0.8700 -4.5516 11.4007 25 1 -1.2436 -3.3970 11.6838 26 6 2.8234 -0.4163 9.3691 27 6 4.0278 -0.1487 8.4545 28 6 3.9645 -1.0659 7.2500 29 8 3.2606 -0.4040 6.2075 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 1.8936 -2.6776 -2.1391 39 1 0.4400 -2.1637 -1.2493 40 1 3.1300 -2.8850 -0.0001 41 1 1.6770 -3.9128 -0.0003 42 1 1.8937 -2.6773 2.1391 43 1 0.4400 -2.1637 1.2492 44 1 2.4214 -1.2596 3.7927 45 1 1.7376 1.2472 4.8999 46 1 0.2850 0.2185 4.9001 47 1 1.6657 1.1577 7.5300 48 1 0.1839 0.1992 7.2996 49 1 1.2054 -1.5746 12.1530 50 1 3.0252 -1.2978 9.9777 51 1 2.6726 0.4428 10.0227 52 1 4.9500 -0.3350 9.0047 53 1 4.0070 0.8892 8.1218 54 1 3.4425 -1.9847 7.5174 55 1 4.9743 -1.3036 6.9155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073904349.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:45 Heat of formation + Delta-G solvation = -96.290663 kcal Electronic energy + Delta-G solvation = -31539.437377 eV Core-core repulsion = 27575.444215 eV Total energy + Delta-G solvation = -3963.993162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.77996 -40.52580 -38.94900 -37.00227 -35.99570 -34.07421 -33.56639 -33.41291 -32.09130 -30.02010 -28.23109 -27.73105 -27.17849 -26.76976 -24.70707 -23.87855 -22.32378 -22.00774 -21.50250 -21.13911 -19.42193 -18.86988 -18.04720 -17.62221 -17.28742 -16.80979 -16.51073 -16.25470 -16.05299 -15.59360 -15.52149 -15.35308 -15.18932 -14.84498 -14.70330 -14.37937 -14.10225 -13.92882 -13.76245 -13.62096 -13.40989 -13.14211 -13.03610 -12.81112 -12.76455 -12.56075 -12.49064 -12.39389 -12.33331 -12.16256 -12.05436 -11.99063 -11.79116 -11.73909 -11.49953 -11.48009 -11.32008 -11.01082 -10.89455 -10.55622 -10.33807 -10.19196 -9.96365 -8.73871 -7.90744 -5.38160 1.43898 1.46496 1.56195 1.73044 2.25075 2.48921 2.76438 3.24680 3.54920 3.60802 3.74375 3.79168 4.05718 4.13442 4.18399 4.21158 4.22877 4.33598 4.37304 4.43909 4.46593 4.52319 4.55682 4.58663 4.59631 4.67243 4.74163 4.78005 4.84955 4.90220 4.90516 4.92954 5.02778 5.11938 5.13684 5.17853 5.18780 5.19784 5.23703 5.25560 5.26569 5.35545 5.43051 5.45714 5.49614 5.50610 5.60044 5.68063 5.73964 5.76661 6.34278 6.64545 6.74461 7.12851 7.36406 7.84942 8.26229 9.15187 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002597 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.663155 B =10780.333056 C =11336.111426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.090 4.090 9 H 0.108 0.892 10 C 0.512 3.488 11 O -0.566 6.566 12 N -0.714 5.714 13 C 0.144 3.856 14 C 0.088 3.912 15 H 0.044 0.956 16 C 0.123 3.877 17 N -0.606 5.606 18 C -0.268 4.268 19 H 0.068 0.932 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.295 1.295 26 C 0.185 3.815 27 C -0.164 4.164 28 C 0.091 3.909 29 O -0.391 6.391 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.410 0.590 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.250 0.750 50 H 0.047 0.953 51 H -0.008 1.008 52 H 0.085 0.915 53 H 0.059 0.941 54 H 0.040 0.960 55 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -2.596 -24.319 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.040 4.040 3 C -0.209 4.209 4 C -0.142 4.142 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.111 4.111 9 H 0.126 0.874 10 C 0.300 3.700 11 O -0.446 6.446 12 N -0.366 5.366 13 C 0.019 3.981 14 C 0.026 3.974 15 H 0.062 0.938 16 C -0.005 4.005 17 N -0.328 5.328 18 C -0.398 4.398 19 H 0.085 0.915 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.222 1.222 26 C 0.060 3.940 27 C -0.203 4.203 28 C 0.016 3.984 29 O -0.310 6.310 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.246 0.754 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.010 0.990 52 H 0.103 0.897 53 H 0.078 0.922 54 H 0.059 0.941 55 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.472 -1.800 -24.321 24.994 hybrid contribution -0.612 -0.825 1.546 1.856 sum 4.860 -2.625 -22.776 23.436 Atomic orbital electron populations 1.22135 0.95095 1.01618 1.02075 1.20244 0.95660 0.94655 0.93414 1.22066 1.00378 0.96128 1.02368 1.21594 1.00875 0.95523 0.96164 1.21606 1.00952 0.95216 0.98204 1.21505 1.01382 0.98959 0.93208 1.21587 1.01119 0.92421 0.99856 1.21400 1.02303 0.96146 0.91267 0.87382 1.21174 0.79547 0.84129 0.85113 1.90571 1.39379 1.27895 1.86763 1.45958 1.53374 1.32226 1.05022 1.21114 0.98441 0.96198 0.82314 1.22260 0.82296 0.98447 0.94355 0.93779 1.21565 0.98167 0.93572 0.87178 1.44049 1.21495 1.37694 1.29586 1.19539 1.17557 1.10782 0.91936 0.91453 1.25776 1.00869 1.01795 0.95735 1.70234 1.50457 1.37560 0.99848 0.85252 0.77509 0.80001 0.77951 1.18993 1.21499 1.22194 1.20779 0.83996 0.98114 0.91086 1.22621 0.99148 1.00448 0.98075 1.22071 0.95974 0.94061 0.86343 1.86102 1.18850 1.74925 1.51165 0.92620 0.92947 0.92244 0.92795 0.92653 0.92429 0.91457 0.91187 0.90811 0.92094 0.90872 0.90926 0.90871 0.92075 0.75391 0.91854 0.90683 0.94061 0.93235 0.94102 0.93486 0.98961 0.89677 0.92210 0.94149 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 7.48 71.98 0.54 -2.60 16 2 C -0.04 -0.71 0.51 -52.18 -0.03 -0.73 16 3 C -0.15 -3.11 8.18 71.98 0.59 -2.52 16 4 C -0.10 -1.37 4.73 30.59 0.14 -1.22 16 5 C -0.12 -1.41 5.65 30.59 0.17 -1.24 16 6 C -0.11 -1.29 5.92 30.59 0.18 -1.10 16 7 C -0.11 -1.69 4.83 30.59 0.15 -1.54 16 8 C -0.09 -1.62 1.84 -11.54 -0.02 -1.64 16 9 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 10 C 0.51 12.82 6.57 87.66 0.58 13.40 16 11 O -0.57 -17.92 11.35 -3.04 -0.03 -17.95 16 12 N -0.71 -17.56 5.38 -463.06 -2.49 -20.06 16 13 C 0.14 4.23 5.34 86.38 0.46 4.69 16 14 C 0.09 2.95 2.68 31.21 0.08 3.03 16 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.12 5.04 5.12 87.25 0.45 5.49 16 17 N -0.61 -29.48 2.23 -698.14 -1.55 -31.04 16 18 C -0.27 -14.25 9.46 84.04 0.80 -13.45 16 19 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 20 C -0.05 -2.52 4.89 84.86 0.41 -2.11 16 21 N -0.94 -54.40 11.00 21.65 0.24 -54.16 16 22 Si 0.96 43.87 29.58 68.60 2.03 45.90 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 C 0.19 8.79 4.70 86.38 0.41 9.19 16 27 C -0.16 -5.88 5.79 30.31 0.18 -5.70 16 28 C 0.09 2.96 6.37 71.50 0.46 3.41 16 29 O -0.39 -12.78 9.38 -117.88 -1.11 -13.89 16 30 H 0.05 1.49 5.51 -2.39 -0.01 1.48 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.11 4.81 -2.39 -0.01 1.10 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.96 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.53 5.51 -2.39 -0.01 1.52 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.02 7.56 -2.39 -0.02 1.00 16 43 H 0.06 1.06 6.43 -2.38 -0.02 1.05 16 44 H 0.41 8.60 7.88 -92.71 -0.73 7.87 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 48 H 0.05 2.05 7.98 -2.38 -0.02 2.04 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.05 2.48 6.37 -2.39 -0.02 2.46 16 51 H -0.01 -0.41 8.04 -2.39 -0.02 -0.43 16 52 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 53 H 0.06 2.13 8.01 -2.39 -0.02 2.12 16 54 H 0.04 1.50 7.40 -2.38 -0.02 1.48 16 55 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -64.18 400.51 2.75 -61.43 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.13 Total: 24.40 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.54 Total: 5.36 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.81 Total: -105.26 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.14 Total: -31.84 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.18 2.75 -61.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904349.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.859 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds