Wall clock time and date at job start Tue Mar 31 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47536 * 2 1 4 4 C 1.53005 * 109.47118 * 240.00045 * 2 1 3 5 5 C 1.52998 * 109.46880 * 300.00356 * 4 2 1 6 6 C 1.53008 * 109.47015 * 299.99483 * 5 4 2 7 7 C 1.52995 * 109.46736 * 60.00466 * 6 5 4 8 8 C 1.53001 * 109.47305 * 119.99941 * 2 1 3 9 9 H 1.09004 * 109.47290 * 179.97438 * 8 2 1 10 10 C 1.50691 * 109.47177 * 300.00136 * 8 2 1 11 11 O 1.21280 * 120.00157 * 359.97438 * 10 8 2 12 12 N 1.34784 * 120.00042 * 179.97438 * 10 8 2 13 13 C 1.46502 * 119.99865 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46816 * 179.97438 * 13 12 10 15 15 H 1.09004 * 108.44528 * 62.12685 * 14 13 12 16 16 C 1.46919 * 108.61919 * 179.97438 * 14 13 12 17 17 N 1.50110 * 106.85609 * 177.97033 * 16 14 13 18 18 C 1.36937 * 120.64076 * 111.28496 * 17 16 14 19 19 H 1.07994 * 119.99943 * 155.63768 * 18 17 16 20 20 C 1.38812 * 119.99533 * 335.63758 * 18 17 16 21 21 N 1.31613 * 120.00312 * 340.86482 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 160.86697 * 20 18 17 23 23 H 1.48499 * 109.47453 * 90.00004 * 22 20 18 24 24 H 1.48505 * 109.46967 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.47243 * 329.99567 * 22 20 18 26 26 C 1.43424 * 118.72367 * 291.30649 * 17 16 14 27 27 C 1.55329 * 116.24607 * 89.35562 * 26 17 16 28 28 C 1.55182 * 108.87078 * 319.46403 * 27 26 17 29 29 O 1.39646 * 110.56337 * 322.14180 * 28 27 26 30 30 H 1.09005 * 109.46844 * 300.00259 * 1 2 3 31 31 H 1.09002 * 109.47357 * 59.99695 * 1 2 3 32 32 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47603 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47046 * 300.00495 * 3 2 1 35 35 H 1.09005 * 109.47266 * 59.99999 * 3 2 1 36 36 H 1.09002 * 109.46795 * 59.99915 * 4 2 1 37 37 H 1.09000 * 109.46925 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47603 * 59.99518 * 5 4 2 39 39 H 1.09005 * 109.47266 * 179.97438 * 5 4 2 40 40 H 1.08996 * 109.46924 * 180.02562 * 6 5 4 41 41 H 1.08993 * 109.46946 * 300.00245 * 6 5 4 42 42 H 1.09008 * 109.47047 * 179.97438 * 7 6 5 43 43 H 1.09004 * 109.47601 * 59.99733 * 7 6 5 44 44 H 0.96997 * 119.99823 * 359.97438 * 12 10 8 45 45 H 1.09000 * 109.46768 * 60.00082 * 13 12 10 46 46 H 1.08996 * 109.47317 * 299.99601 * 13 12 10 47 47 H 1.09002 * 109.98780 * 58.60328 * 16 14 13 48 48 H 1.09006 * 109.98891 * 297.33453 * 16 14 13 49 49 H 0.97004 * 119.99834 * 180.02562 * 21 20 18 50 50 H 1.09006 * 108.12547 * 211.11805 * 26 17 16 51 51 H 1.09002 * 108.12924 * 327.59364 * 26 17 16 52 52 H 1.09005 * 109.56765 * 79.27653 * 27 26 17 53 53 H 1.08992 * 109.57279 * 199.51948 * 27 26 17 54 54 H 1.09000 * 109.26364 * 82.42329 * 28 27 26 55 55 H 1.09007 * 109.25961 * 201.85953 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5298 -2.1637 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2490 10 6 1.5377 -0.0109 2.4796 11 8 0.8408 0.9754 2.3684 12 7 1.8629 -0.4717 3.7038 13 6 1.3750 0.2193 4.9000 14 6 1.8839 -0.5028 6.1492 15 1 2.9732 -0.4611 6.1520 16 6 1.3850 0.2049 7.3361 17 7 1.8638 -0.5627 8.5339 18 6 2.8081 -0.0317 9.3714 19 1 2.8692 -0.3651 10.3968 20 6 3.6866 0.9353 8.9023 21 7 3.8795 1.0769 7.6081 22 14 4.5953 2.0354 10.1080 23 1 5.8846 1.4008 10.4824 24 1 4.8574 3.3530 9.4752 25 1 3.7661 2.2270 11.3250 26 6 1.3135 -1.8634 8.7841 27 6 2.0487 -3.0597 8.1201 28 6 2.4687 -2.6550 6.6820 29 8 1.4807 -1.8687 6.0855 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 0.4398 -2.1637 -1.2492 39 1 1.8928 -2.6775 -2.1395 40 1 1.6769 -3.9128 -0.0003 41 1 3.1298 -2.8850 -0.0001 42 1 1.8929 -2.6779 2.1392 43 1 0.4399 -2.1637 1.2492 44 1 2.4200 -1.2607 3.7928 45 1 0.2850 0.2200 4.8999 46 1 1.7391 1.2466 4.9001 47 1 0.2954 0.2330 7.3225 48 1 1.7833 1.2193 7.3599 49 1 4.4938 1.7524 7.2804 50 1 1.3051 -2.0264 9.8619 51 1 0.2797 -1.8665 8.4384 52 1 2.9353 -3.3118 8.7020 53 1 1.3819 -3.9208 8.0790 54 1 3.4002 -2.0906 6.7248 55 1 2.6212 -3.5545 6.0854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073904351.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:49 Heat of formation + Delta-G solvation = -87.370084 kcal Electronic energy + Delta-G solvation = -32159.044045 eV Core-core repulsion = 28195.437708 eV Total energy + Delta-G solvation = -3963.606337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.78886 -40.63233 -38.91944 -36.79586 -36.01233 -34.11917 -33.69455 -33.06133 -31.92970 -30.21290 -28.26031 -27.79055 -27.06890 -26.68999 -24.59757 -23.86885 -22.40395 -22.00009 -21.37147 -21.18516 -19.44200 -18.89122 -18.01922 -17.67080 -16.98745 -16.62650 -16.42879 -16.13913 -15.96549 -15.62080 -15.42796 -15.39642 -15.16995 -14.85645 -14.69938 -14.31547 -14.13123 -13.92786 -13.77087 -13.56713 -13.40788 -13.29308 -12.99439 -12.77275 -12.65185 -12.56779 -12.47823 -12.33692 -12.31778 -12.15369 -11.99480 -11.92976 -11.79541 -11.73370 -11.49271 -11.37102 -11.18899 -11.01207 -10.89451 -10.56492 -10.34557 -10.17225 -9.93354 -8.71950 -7.90151 -5.30754 1.46260 1.50892 1.58048 1.73783 2.30625 2.51995 3.11337 3.27451 3.50585 3.60446 3.74679 3.79161 4.12915 4.19296 4.22453 4.27740 4.35500 4.37814 4.41646 4.43231 4.47158 4.53162 4.57839 4.60270 4.73562 4.77342 4.79346 4.80442 4.89230 4.91739 4.97788 5.02763 5.07586 5.11601 5.17548 5.18443 5.19029 5.19630 5.25565 5.26316 5.34267 5.35366 5.40413 5.43707 5.47598 5.49459 5.53324 5.67304 5.68279 5.77118 6.35811 6.51762 6.66905 7.10288 7.37458 7.82709 8.35660 9.15710 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.003030 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.410128 B = 9238.402577 C =10145.037624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.153 4.153 4 C -0.104 4.104 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.090 4.090 9 H 0.104 0.896 10 C 0.509 3.491 11 O -0.569 6.569 12 N -0.710 5.710 13 C 0.136 3.864 14 C 0.082 3.918 15 H 0.083 0.917 16 C 0.146 3.854 17 N -0.602 5.602 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.036 4.036 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.279 1.279 26 C 0.154 3.846 27 C -0.164 4.164 28 C 0.068 3.932 29 O -0.366 6.366 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.407 0.593 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.022 0.978 48 H 0.077 0.923 49 H 0.250 0.750 50 H 0.030 0.970 51 H 0.034 0.966 52 H 0.053 0.947 53 H 0.078 0.922 54 H 0.035 0.965 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -8.930 -17.168 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.039 4.039 3 C -0.210 4.210 4 C -0.141 4.141 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.111 4.111 9 H 0.122 0.878 10 C 0.298 3.702 11 O -0.449 6.449 12 N -0.360 5.360 13 C 0.010 3.990 14 C 0.023 3.977 15 H 0.101 0.899 16 C 0.021 3.979 17 N -0.323 5.323 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.232 4.232 21 N -0.563 5.563 22 Si 0.788 3.212 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.205 1.205 26 C 0.026 3.974 27 C -0.205 4.205 28 C -0.009 4.009 29 O -0.285 6.285 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.242 0.758 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.095 0.905 49 H 0.060 0.940 50 H 0.049 0.951 51 H 0.052 0.948 52 H 0.072 0.928 53 H 0.097 0.903 54 H 0.054 0.946 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.814 -8.169 -17.347 19.379 hybrid contribution 1.031 0.763 1.280 1.812 sum -1.783 -7.407 -16.067 17.781 Atomic orbital electron populations 1.22120 0.94946 1.01696 1.02034 1.20245 0.95795 0.94518 0.93382 1.22070 1.00277 0.96328 1.02337 1.21593 1.00806 0.95671 0.96053 1.21605 1.01031 0.95050 0.98175 1.21506 1.01293 0.99049 0.93123 1.21568 1.01116 0.92204 0.99870 1.21403 1.02054 0.96393 0.91247 0.87800 1.21251 0.79638 0.84171 0.85179 1.90552 1.39577 1.28002 1.86791 1.45898 1.53217 1.31824 1.05095 1.21293 0.98294 0.95483 0.83900 1.21741 1.00696 0.81999 0.93301 0.89937 1.20649 0.94125 0.97286 0.85858 1.44228 1.45859 1.13197 1.29052 1.19390 1.08609 1.19471 0.91890 0.91936 1.25471 0.98226 1.02471 0.97069 1.69994 1.38338 1.35489 1.12438 0.85429 0.78390 0.78497 0.78933 1.21379 1.22002 1.20466 1.20491 0.95126 0.84793 0.97016 1.23486 1.00864 0.99300 0.96872 1.22390 0.90251 0.94818 0.93459 1.87534 1.45483 1.17058 1.78394 0.92855 0.92745 0.92072 0.93000 0.92402 0.92698 0.91258 0.91342 0.91927 0.90602 0.90645 0.91039 0.91111 0.92017 0.75751 0.92792 0.92422 0.95999 0.90499 0.94016 0.95141 0.94796 0.92803 0.90298 0.94644 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 7.48 71.98 0.54 -2.97 16 2 C -0.04 -0.82 0.51 -52.18 -0.03 -0.85 16 3 C -0.15 -3.68 8.18 71.98 0.59 -3.09 16 4 C -0.10 -1.61 4.73 30.60 0.14 -1.46 16 5 C -0.12 -1.61 5.65 30.60 0.17 -1.44 16 6 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 7 C -0.11 -2.00 4.82 30.59 0.15 -1.86 16 8 C -0.09 -1.98 1.84 -11.54 -0.02 -2.00 16 9 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 10 C 0.51 15.49 6.57 87.65 0.58 16.06 16 11 O -0.57 -20.98 11.35 -3.03 -0.03 -21.02 16 12 N -0.71 -22.15 5.29 -463.05 -2.45 -24.61 16 13 C 0.14 5.07 5.27 86.38 0.46 5.53 16 14 C 0.08 3.31 2.01 28.71 0.06 3.37 16 15 H 0.08 3.82 5.25 -2.38 -0.01 3.81 16 16 C 0.15 6.71 4.70 83.79 0.39 7.10 16 17 N -0.60 -28.99 2.61 -706.00 -1.85 -30.84 16 18 C -0.26 -13.84 9.62 84.03 0.81 -13.03 16 19 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 20 C -0.04 -1.88 4.92 84.86 0.42 -1.46 16 21 N -0.92 -48.58 9.56 21.65 0.21 -48.38 16 22 Si 0.96 43.20 29.59 68.60 2.03 45.23 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.15 6.35 5.32 87.75 0.47 6.82 16 27 C -0.16 -5.74 6.75 32.14 0.22 -5.53 16 28 C 0.07 2.39 6.38 72.73 0.46 2.86 16 29 O -0.37 -13.62 9.36 -137.25 -1.28 -14.91 16 30 H 0.05 1.60 5.51 -2.38 -0.01 1.59 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.27 4.81 -2.39 -0.01 1.26 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.69 5.51 -2.38 -0.01 1.68 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.26 7.56 -2.38 -0.02 1.24 16 43 H 0.06 1.26 6.43 -2.38 -0.02 1.24 16 44 H 0.41 11.30 7.61 -92.71 -0.71 10.60 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 3.96 6.03 -2.38 -0.01 3.94 16 49 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 50 H 0.03 1.25 7.97 -2.38 -0.02 1.23 16 51 H 0.03 1.36 7.99 -2.39 -0.02 1.34 16 52 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 53 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 54 H 0.04 1.45 6.67 -2.39 -0.02 1.43 16 55 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -58.88 395.84 2.37 -56.51 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.16 Total: 31.29 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.58 Total: 6.71 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.09 Total: -103.82 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.32 Total: -35.93 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.88 2.37 -56.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904351.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.857 kcal (2) G-P(sol) polarization free energy of solvation -58.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds