Wall clock time and date at job start Tue Mar 31 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.53004 * 109.47154 * 120.00026 * 2 1 3 5 5 C 1.53000 * 109.47148 * 60.00017 * 4 2 1 6 6 C 1.53000 * 109.47135 * 59.99844 * 5 4 2 7 7 C 1.52996 * 109.47399 * 299.99915 * 6 5 4 8 8 H 1.08997 * 109.47237 * 300.00334 * 7 6 5 9 9 C 1.50700 * 109.47374 * 179.97438 * 7 6 5 10 10 O 1.21281 * 120.00184 * 240.00119 * 9 7 6 11 11 N 1.34780 * 119.99453 * 60.00159 * 9 7 6 12 12 C 1.46507 * 119.99613 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.46822 * 179.97438 * 12 11 9 14 14 H 1.09006 * 108.57099 * 57.95070 * 13 12 11 15 15 C 1.46922 * 108.61956 * 175.75511 * 13 12 11 16 16 N 1.50116 * 106.77898 * 177.91971 * 15 13 12 17 17 C 1.36934 * 120.63273 * 111.32597 * 16 15 13 18 18 H 1.07994 * 120.00254 * 320.52243 * 17 16 15 19 19 C 1.38815 * 119.99977 * 140.51874 * 17 16 15 20 20 N 1.31614 * 120.00075 * 156.55129 * 19 17 16 21 21 Si 1.86805 * 120.00042 * 336.55760 * 19 17 16 22 22 H 1.48502 * 109.46970 * 95.54769 * 21 19 17 23 23 H 1.48491 * 109.47224 * 215.55044 * 21 19 17 24 24 H 1.48503 * 109.46906 * 335.55109 * 21 19 17 25 25 C 1.43419 * 118.72729 * 291.35085 * 16 15 13 26 26 C 1.55321 * 116.24109 * 89.35668 * 25 16 15 27 27 C 1.55188 * 108.87408 * 319.46050 * 26 25 16 28 28 O 1.39641 * 110.56943 * 322.14602 * 27 26 25 29 29 C 1.53000 * 109.46986 * 240.00093 * 2 1 3 30 30 H 1.08996 * 109.46878 * 300.00143 * 1 2 3 31 31 H 1.09003 * 109.47261 * 59.99957 * 1 2 3 32 32 H 1.09003 * 109.47181 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46841 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47296 * 299.99619 * 3 2 1 35 35 H 1.08996 * 109.47382 * 60.00165 * 3 2 1 36 36 H 1.08996 * 109.47090 * 299.99702 * 4 2 1 37 37 H 1.09006 * 109.46647 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.46854 * 299.99905 * 5 4 2 39 39 H 1.08995 * 109.46771 * 179.97438 * 5 4 2 40 40 H 1.09007 * 109.47327 * 60.00211 * 6 5 4 41 41 H 1.08998 * 109.46823 * 179.97438 * 6 5 4 42 42 H 0.96997 * 120.00544 * 0.02562 * 11 9 7 43 43 H 1.09003 * 109.47116 * 300.00042 * 12 11 9 44 44 H 1.08999 * 109.46702 * 59.99855 * 12 11 9 45 45 H 1.08997 * 109.99097 * 297.24095 * 15 13 12 46 46 H 1.09004 * 109.98463 * 58.60704 * 15 13 12 47 47 H 0.96999 * 120.00266 * 180.02562 * 20 19 17 48 48 H 1.09002 * 108.12541 * 327.58969 * 25 16 15 49 49 H 1.09007 * 107.96148 * 210.99008 * 25 16 15 50 50 H 1.09005 * 109.57027 * 199.64818 * 26 25 16 51 51 H 1.09002 * 109.67295 * 79.34152 * 26 25 16 52 52 H 1.09000 * 109.25665 * 201.86106 * 27 26 25 53 53 H 1.08998 * 109.22495 * 82.40533 * 27 26 25 54 54 H 1.08994 * 109.47729 * 60.00051 * 29 2 1 55 55 H 1.09007 * 109.47327 * 180.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1638 1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 -1.2492 8 1 0.4400 -2.1638 -1.2492 9 6 2.0328 -2.8739 -2.4797 10 8 2.7300 -2.2841 -3.2778 11 7 1.7076 -4.1643 -2.6931 12 6 2.1960 -4.8545 -3.8897 13 6 1.6871 -6.2973 -3.8895 14 1 0.5978 -6.2812 -3.8520 15 6 2.1010 -6.9409 -5.1437 16 7 1.6269 -8.3637 -5.0778 17 6 0.6239 -8.8037 -5.8995 18 1 -0.2227 -8.1663 -6.1074 19 6 0.6952 -10.0692 -6.4655 20 7 -0.4043 -10.6794 -6.8539 21 14 2.3520 -10.9063 -6.6758 22 1 2.6008 -11.8081 -5.5226 23 1 2.3506 -11.6980 -7.9321 24 1 3.4215 -9.8780 -6.7399 25 6 2.2444 -9.2531 -4.1372 26 6 1.6052 -9.3083 -2.7227 27 6 1.2128 -7.8698 -2.2926 28 8 2.1725 -6.9505 -2.7213 29 6 2.0399 -0.7212 -1.2493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -0.2074 2.1392 37 1 3.1301 -0.7216 1.2489 38 1 0.4400 -2.1637 1.2493 39 1 1.8937 -2.6777 2.1390 40 1 3.1300 -2.8851 0.0000 41 1 1.6770 -3.9128 0.0003 42 1 1.1497 -4.6359 -2.0550 43 1 1.8322 -4.3405 -4.7795 44 1 3.2860 -4.8539 -3.8899 45 1 1.6413 -6.4339 -5.9921 46 1 3.1868 -6.9138 -5.2357 47 1 -0.3545 -11.5638 -7.2491 48 1 3.2880 -8.9585 -4.0266 49 1 2.2211 -10.2578 -4.5594 50 1 2.3239 -9.7182 -2.0130 51 1 0.7157 -9.9379 -2.7463 52 1 1.1350 -7.8280 -1.2062 53 1 0.2486 -7.6142 -2.7321 54 1 1.6767 -0.2075 -2.1392 55 1 3.1300 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073905481.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:26 Heat of formation + Delta-G solvation = -98.607575 kcal Electronic energy + Delta-G solvation = -31188.230353 eV Core-core repulsion = 27224.136722 eV Total energy + Delta-G solvation = -3964.093631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.54766 -40.78370 -39.39057 -37.06290 -36.01677 -34.43960 -33.84652 -33.39406 -31.95967 -30.45527 -28.15738 -27.66031 -27.23289 -27.02258 -24.86738 -23.59689 -22.56777 -22.48174 -21.85781 -20.93441 -19.32716 -18.86966 -18.19972 -17.51410 -17.45066 -17.23609 -16.41212 -16.21094 -16.00345 -15.73768 -15.52020 -15.39421 -15.24320 -14.96854 -14.72634 -14.43131 -14.23871 -14.07499 -13.97570 -13.84231 -13.69607 -13.46117 -13.14579 -12.88865 -12.80930 -12.75581 -12.65184 -12.41347 -12.34681 -12.29965 -12.03201 -11.92666 -11.85443 -11.75535 -11.64208 -11.39669 -11.32994 -11.02739 -10.92031 -10.70381 -10.58149 -10.41754 -10.07590 -8.76737 -8.25080 -5.65313 1.28118 1.38375 1.49468 1.66149 2.20565 2.38724 2.91704 3.01352 3.20062 3.61918 3.69057 3.75638 3.94885 4.00809 4.09686 4.15851 4.20839 4.27066 4.30356 4.35896 4.39871 4.46250 4.53210 4.54906 4.56848 4.60248 4.66535 4.71778 4.75935 4.80009 4.84755 4.90232 4.97059 5.02219 5.07626 5.10002 5.10415 5.13148 5.16380 5.18271 5.22592 5.23672 5.26499 5.30007 5.40148 5.43225 5.47954 5.53618 5.68678 5.91544 6.12303 6.29558 6.57203 6.94730 7.26818 7.56791 8.04886 8.93840 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.002320 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.228256 B =12067.240667 C =12415.505640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.107 4.107 7 C -0.099 4.099 8 H 0.116 0.884 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.711 5.711 12 C 0.126 3.874 13 C 0.076 3.924 14 H 0.068 0.932 15 C 0.110 3.890 16 N -0.611 5.611 17 C -0.257 4.257 18 H 0.047 0.953 19 C -0.010 4.010 20 N -0.939 5.939 21 Si 0.937 3.063 22 H -0.278 1.278 23 H -0.306 1.306 24 H -0.266 1.266 25 C 0.144 3.856 26 C -0.166 4.166 27 C 0.069 3.931 28 O -0.354 6.354 29 C -0.083 4.083 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.412 0.588 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.041 0.959 49 H 0.018 0.982 50 H 0.080 0.920 51 H 0.051 0.949 52 H 0.099 0.901 53 H 0.048 0.952 54 H 0.052 0.948 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 19.689 20.227 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.145 4.145 7 C -0.120 4.120 8 H 0.134 0.866 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.362 5.362 12 C 0.001 3.999 13 C 0.016 3.984 14 H 0.085 0.915 15 C -0.014 4.014 16 N -0.334 5.334 17 C -0.387 4.387 18 H 0.064 0.936 19 C -0.207 4.207 20 N -0.582 5.582 21 Si 0.766 3.234 22 H -0.205 1.205 23 H -0.235 1.235 24 H -0.190 1.190 25 C 0.017 3.983 26 C -0.207 4.207 27 C -0.008 4.008 28 O -0.272 6.272 29 C -0.121 4.121 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.036 0.964 50 H 0.098 0.902 51 H 0.070 0.930 52 H 0.117 0.883 53 H 0.066 0.934 54 H 0.071 0.929 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.339 19.998 19.638 28.226 hybrid contribution 0.228 -1.330 -0.855 1.597 sum 3.567 18.668 18.784 26.722 Atomic orbital electron populations 1.21992 0.93828 1.02444 1.01995 1.20543 0.96295 0.95137 0.94277 1.21851 1.00782 0.95153 1.02048 1.21618 1.00317 0.95573 0.97090 1.21567 1.01763 0.95179 0.96773 1.21522 1.00704 0.99343 0.92900 1.21406 1.02953 0.95839 0.91763 0.86601 1.21317 0.79328 0.81579 0.87857 1.90672 1.40055 1.67080 1.49037 1.45854 1.53334 1.11778 1.25267 1.21426 0.99612 0.90264 0.88593 1.21681 0.98381 0.90460 0.87860 0.91460 1.21199 0.98522 0.84913 0.96732 1.44200 1.42297 1.08118 1.38798 1.18586 0.97248 1.00043 1.22819 0.93559 1.26057 0.98893 0.98531 0.97260 1.69979 1.28511 1.14650 1.45110 0.85935 0.83134 0.78297 0.75990 1.20529 1.23485 1.19050 1.20724 0.95114 0.92748 0.89743 1.23452 1.01123 0.98408 0.97728 1.22459 0.90806 0.88067 0.99498 1.87613 1.43677 1.54290 1.41631 1.21344 1.00064 0.92912 0.97802 0.91655 0.93180 0.91566 0.93138 0.93038 0.91481 0.90682 0.92623 0.90298 0.90705 0.92721 0.90401 0.75155 0.90476 0.91820 0.90127 0.93151 0.92703 0.94046 0.96384 0.90162 0.92988 0.88303 0.93355 0.92894 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.78 71.98 0.56 -1.02 16 2 C -0.06 -0.80 0.77 -52.18 -0.04 -0.84 16 3 C -0.14 -1.75 8.47 71.98 0.61 -1.14 16 4 C -0.11 -1.19 4.73 30.60 0.14 -1.05 16 5 C -0.12 -1.17 5.65 30.59 0.17 -1.00 16 6 C -0.11 -1.47 5.10 30.59 0.16 -1.32 16 7 C -0.10 -1.68 2.25 -11.54 -0.03 -1.70 16 8 H 0.12 1.57 6.43 -2.39 -0.02 1.56 16 9 C 0.51 12.65 7.15 87.66 0.63 13.28 16 10 O -0.59 -19.67 15.98 -3.03 -0.05 -19.72 16 11 N -0.71 -16.18 5.32 -463.04 -2.47 -18.64 16 12 C 0.13 3.40 5.24 86.38 0.45 3.85 16 13 C 0.08 2.27 2.10 28.71 0.06 2.33 16 14 H 0.07 2.08 6.77 -2.38 -0.02 2.06 16 15 C 0.11 4.05 5.58 83.79 0.47 4.52 16 16 N -0.61 -27.58 2.16 -706.02 -1.52 -29.11 16 17 C -0.26 -13.99 9.93 84.03 0.83 -13.16 16 18 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 19 C -0.01 -0.55 5.27 84.86 0.45 -0.11 16 20 N -0.94 -57.17 13.97 21.65 0.30 -56.86 16 21 Si 0.94 46.19 25.24 68.60 1.73 47.92 16 22 H -0.28 -13.22 6.74 99.48 0.67 -12.55 16 23 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.14 6.03 4.30 87.75 0.38 6.41 16 26 C -0.17 -5.70 6.75 32.14 0.22 -5.48 16 27 C 0.07 1.98 6.38 72.73 0.46 2.45 16 28 O -0.35 -10.50 9.54 -137.20 -1.31 -11.81 16 29 C -0.08 -1.52 3.30 30.60 0.10 -1.42 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.65 4.81 -2.39 -0.01 0.64 16 33 H 0.05 0.66 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.08 0.66 6.43 -2.39 -0.02 0.64 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 0.94 7.57 -2.39 -0.02 0.93 16 42 H 0.41 7.53 7.75 -92.71 -0.72 6.81 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.08 2.94 8.00 -2.39 -0.02 2.92 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 49 H 0.02 0.85 3.44 -2.38 -0.01 0.84 16 50 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 51 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 53 H 0.05 1.49 6.66 -2.39 -0.02 1.48 16 54 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 55 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 Total: -1.00 -68.28 404.44 2.42 -65.86 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.10 Total: 17.75 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.63 Total: 4.61 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.69 Total: -104.61 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.36 Total: -31.53 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.73 Total: 47.92 kcal Total: -68.28 2.42 -65.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073905481.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.745 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds