Wall clock time and date at job start Tue Mar 31 2020 21:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46792 * 2 1 4 4 C 1.52998 * 109.47137 * 239.99945 * 2 1 3 5 5 C 1.53000 * 109.46843 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47488 * 59.99930 * 5 4 2 7 7 C 1.53004 * 109.46865 * 299.99757 * 6 5 4 8 8 H 1.09001 * 109.47740 * 299.99758 * 7 6 5 9 9 C 1.50703 * 109.47126 * 179.97438 * 7 6 5 10 10 O 1.21277 * 120.00084 * 240.00158 * 9 7 6 11 11 N 1.34774 * 119.99625 * 60.00310 * 9 7 6 12 12 C 1.46507 * 119.99654 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46920 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.40840 * 305.16507 * 13 12 11 15 15 C 1.54668 * 109.41570 * 185.58744 * 13 12 11 16 16 N 1.48179 * 110.48877 * 200.68117 * 15 13 12 17 17 C 1.36941 * 118.51050 * 138.65975 * 16 15 13 18 18 H 1.07998 * 120.00034 * 206.47328 * 17 16 15 19 19 C 1.38814 * 119.99984 * 26.46872 * 17 16 15 20 20 N 1.31625 * 120.00019 * 16.69282 * 19 17 16 21 21 Si 1.86798 * 119.99880 * 196.69049 * 19 17 16 22 22 H 1.48492 * 109.47232 * 269.99962 * 21 19 17 23 23 H 1.48499 * 109.47187 * 30.00333 * 21 19 17 24 24 H 1.48505 * 109.46969 * 150.00095 * 21 19 17 25 25 C 1.44456 * 122.97747 * 318.37751 * 16 15 13 26 26 C 1.54882 * 109.32477 * 89.21440 * 25 16 15 27 27 C 1.47688 * 109.67840 * 290.10293 * 26 25 16 28 28 O 1.40531 * 109.40414 * 65.00087 * 13 12 11 29 29 C 1.52999 * 109.46957 * 60.00417 * 7 6 5 30 30 H 1.09004 * 109.47284 * 300.00190 * 1 2 3 31 31 H 1.09000 * 109.47009 * 60.00509 * 1 2 3 32 32 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47117 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47294 * 299.99837 * 3 2 1 35 35 H 1.09004 * 109.47361 * 59.99857 * 3 2 1 36 36 H 1.08998 * 109.47143 * 299.99515 * 4 2 1 37 37 H 1.08992 * 109.47248 * 59.99754 * 4 2 1 38 38 H 1.08998 * 109.46955 * 180.02562 * 5 4 2 39 39 H 1.09003 * 109.47088 * 299.99683 * 5 4 2 40 40 H 1.09002 * 109.47524 * 180.02562 * 6 5 4 41 41 H 1.08990 * 109.47346 * 59.99835 * 6 5 4 42 42 H 0.96997 * 120.00470 * 359.97438 * 11 9 7 43 43 H 1.08996 * 109.46912 * 60.00645 * 12 11 9 44 44 H 1.08990 * 109.47393 * 300.00073 * 12 11 9 45 45 H 1.09006 * 109.42489 * 80.37324 * 15 13 12 46 46 H 1.08994 * 109.24321 * 320.87571 * 15 13 12 47 47 H 0.96994 * 119.99827 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.50088 * 209.16997 * 25 16 15 49 49 H 1.08998 * 109.49625 * 329.23418 * 25 16 15 50 50 H 1.08991 * 109.43383 * 50.16387 * 26 25 16 51 51 H 1.09001 * 109.43589 * 170.04012 * 26 25 16 52 52 H 1.09000 * 108.64353 * 181.88067 * 27 26 25 53 53 H 1.08999 * 108.64245 * 299.85808 * 27 26 25 54 54 H 1.08995 * 109.47795 * 59.99742 * 29 7 6 55 55 H 1.09004 * 109.47079 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2496 8 1 3.9332 0.3056 1.2499 9 6 4.0708 -1.4330 2.4801 10 8 3.2821 -1.8936 3.2780 11 7 5.3957 -1.5570 2.6939 12 6 5.8831 -2.2478 3.8904 13 6 7.4131 -2.2494 3.8907 14 1 7.7750 -2.6819 2.9579 15 6 7.9262 -3.0985 5.0773 16 7 9.3237 -2.7347 5.4095 17 6 9.6774 -2.6356 6.7287 18 1 10.4935 -1.9919 7.0220 19 6 8.9871 -3.3625 7.6888 20 7 8.2302 -4.3771 7.3280 21 14 9.1323 -2.9008 9.4930 22 1 10.2648 -3.6419 10.1040 23 1 9.3744 -1.4405 9.6123 24 1 7.8730 -3.2529 10.1970 25 6 10.3313 -2.4855 4.4048 26 6 10.3105 -0.9857 4.0189 27 6 9.0757 -0.6825 3.2676 28 8 7.8814 -0.9295 4.0058 29 6 2.0395 -0.7215 1.2493 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1391 38 1 3.9334 -1.2352 -2.1390 39 1 3.9337 0.3058 -1.2486 40 1 5.1695 -1.4433 0.0009 41 1 3.7159 -2.4708 0.0002 42 1 6.0266 -1.1890 2.0556 43 1 5.5191 -3.2752 3.8904 44 1 5.5198 -1.7336 4.7801 45 1 7.8834 -4.1550 4.8124 46 1 7.2927 -2.9210 5.9464 47 1 7.7481 -4.8853 7.9990 48 1 11.3127 -2.7455 4.8014 49 1 10.1232 -3.0913 3.5228 50 1 10.3432 -0.3781 4.9232 51 1 11.1775 -0.7587 3.3985 52 1 9.0942 0.3676 2.9760 53 1 9.0579 -1.2937 2.3652 54 1 1.6758 -1.7490 1.2491 55 1 1.6761 -0.2080 2.1395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073905483.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:36 Heat of formation + Delta-G solvation = -106.217209 kcal Electronic energy + Delta-G solvation = -31224.430296 eV Core-core repulsion = 27260.006687 eV Total energy + Delta-G solvation = -3964.423609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.50648 -40.41371 -39.38295 -36.89289 -36.00797 -34.48236 -33.95206 -32.87122 -31.95195 -30.27792 -28.16161 -27.52387 -27.07731 -27.00699 -24.90260 -23.65844 -22.51751 -22.34984 -21.58379 -20.87380 -19.33432 -18.86995 -18.06430 -17.76326 -17.28763 -16.73314 -16.42097 -16.31239 -15.93871 -15.53611 -15.52389 -15.29537 -15.19491 -14.79468 -14.56002 -14.27287 -14.24507 -14.05018 -13.87898 -13.71833 -13.46760 -13.26118 -13.05316 -12.89882 -12.76480 -12.75273 -12.44837 -12.42949 -12.31498 -12.30200 -12.02717 -11.93333 -11.85940 -11.81271 -11.46201 -11.39443 -11.35904 -11.02842 -10.92449 -10.69868 -10.54122 -10.25381 -10.12506 -8.67981 -7.87756 -5.32252 1.41760 1.45329 1.53689 1.64409 2.15120 2.50395 2.91665 3.25967 3.56368 3.60544 3.68212 3.74855 4.02675 4.06993 4.12741 4.15093 4.19729 4.25776 4.32387 4.35683 4.45352 4.45896 4.52934 4.57836 4.59748 4.61670 4.75468 4.78633 4.83514 4.85752 4.88754 4.90908 5.01940 5.09691 5.12866 5.14366 5.17275 5.21611 5.22494 5.23404 5.26244 5.29572 5.39777 5.42121 5.47149 5.51794 5.53263 5.60281 5.68727 5.68893 6.38532 6.55984 6.57945 7.15731 7.26445 7.92275 8.30111 9.17015 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002521 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.112652 B =11103.537850 C =11950.980464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.108 4.108 7 C -0.096 4.096 8 H 0.117 0.883 9 C 0.508 3.492 10 O -0.592 6.592 11 N -0.707 5.707 12 C 0.135 3.865 13 C 0.080 3.920 14 H 0.076 0.924 15 C 0.173 3.827 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.958 3.042 22 H -0.282 1.282 23 H -0.275 1.275 24 H -0.295 1.295 25 C 0.147 3.853 26 C -0.170 4.170 27 C 0.068 3.932 28 O -0.378 6.378 29 C -0.085 4.085 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.414 0.586 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.012 0.988 46 H 0.038 0.962 47 H 0.248 0.752 48 H 0.040 0.960 49 H 0.046 0.954 50 H 0.041 0.959 51 H 0.097 0.903 52 H 0.097 0.903 53 H 0.064 0.936 54 H 0.049 0.951 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 11.087 -23.534 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.117 4.117 8 H 0.135 0.865 9 C 0.296 3.704 10 O -0.472 6.472 11 N -0.359 5.359 12 C 0.010 3.990 13 C 0.019 3.981 14 H 0.093 0.907 15 C 0.047 3.953 16 N -0.325 5.325 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.787 3.213 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.222 1.222 25 C 0.021 3.979 26 C -0.210 4.210 27 C -0.008 4.008 28 O -0.296 6.296 29 C -0.123 4.123 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.116 0.884 52 H 0.115 0.885 53 H 0.082 0.918 54 H 0.068 0.932 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.233 10.788 -22.784 26.846 hybrid contribution 0.367 -0.441 1.635 1.733 sum -8.866 10.347 -21.148 25.158 Atomic orbital electron populations 1.21857 0.94350 1.01630 1.02034 1.20541 0.95545 0.95899 0.94209 1.21994 1.01755 0.94521 1.01973 1.21617 0.95849 1.00174 0.96958 1.21565 0.95350 1.01557 0.96704 1.21552 1.01277 0.99014 0.92713 1.21406 0.97573 1.01113 0.91584 0.86526 1.21481 0.81766 0.79085 0.88058 1.90683 1.56441 1.50792 1.49283 1.45821 1.07241 1.58123 1.24693 1.21169 0.92683 0.97029 0.88077 1.22766 0.91870 0.84504 0.98920 0.90673 1.21437 0.85137 0.93711 0.95045 1.43820 1.05141 1.81279 1.02237 1.19413 1.16055 1.19123 0.84481 0.92110 1.25699 1.00990 0.95970 1.01789 1.70179 1.34865 1.19547 1.33361 0.85411 0.76685 0.78048 0.81150 1.20819 1.20012 1.22157 1.20921 0.91658 0.94103 0.91268 1.22146 0.99252 0.98887 1.00729 1.21594 0.84225 1.02025 0.92975 1.87442 1.41437 1.27317 1.73427 1.21362 0.92698 1.00415 0.97863 0.93246 0.91271 0.93179 0.91458 0.91424 0.93426 0.92630 0.90478 0.90368 0.90175 0.90031 0.92582 0.74956 0.91272 0.93656 0.97004 0.94301 0.94275 0.94111 0.93607 0.93993 0.88429 0.88473 0.91755 0.93180 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.47 71.98 0.61 -1.34 16 2 C -0.06 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.15 -1.74 7.78 71.98 0.56 -1.18 16 4 C -0.11 -1.25 4.73 30.59 0.14 -1.10 16 5 C -0.11 -1.15 5.65 30.59 0.17 -0.98 16 6 C -0.11 -1.53 5.10 30.59 0.16 -1.37 16 7 C -0.10 -1.83 2.25 -11.54 -0.03 -1.85 16 8 H 0.12 1.82 6.43 -2.39 -0.02 1.80 16 9 C 0.51 14.56 7.15 87.66 0.63 15.19 16 10 O -0.59 -22.96 15.98 -3.02 -0.05 -23.01 16 11 N -0.71 -18.97 5.39 -463.06 -2.50 -21.46 16 12 C 0.14 4.75 5.24 86.38 0.45 5.20 16 13 C 0.08 2.85 2.35 31.16 0.07 2.92 16 14 H 0.08 2.28 7.20 -2.39 -0.02 2.26 16 15 C 0.17 8.34 4.54 86.62 0.39 8.73 16 16 N -0.60 -29.93 2.58 -695.72 -1.79 -31.73 16 17 C -0.26 -14.53 9.42 84.03 0.79 -13.74 16 18 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 19 C -0.05 -2.82 4.85 84.86 0.41 -2.41 16 20 N -0.93 -56.21 11.09 21.65 0.24 -55.97 16 21 Si 0.96 46.61 29.59 68.60 2.03 48.63 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 C 0.15 5.76 5.68 87.40 0.50 6.25 16 26 C -0.17 -5.30 6.03 29.57 0.18 -5.12 16 27 C 0.07 1.84 6.04 70.32 0.43 2.27 16 28 O -0.38 -13.41 9.78 -144.95 -1.42 -14.83 16 29 C -0.09 -1.75 3.30 30.59 0.10 -1.65 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.71 4.81 -2.39 -0.01 0.70 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.65 6.43 -2.39 -0.02 0.64 16 40 H 0.08 0.93 7.56 -2.39 -0.02 0.91 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.41 8.32 7.88 -92.71 -0.73 7.59 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.01 0.62 8.02 -2.38 -0.02 0.60 16 46 H 0.04 2.18 6.31 -2.39 -0.02 2.16 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.04 1.64 7.97 -2.39 -0.02 1.62 16 49 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.06 1.40 7.27 -2.39 -0.02 1.39 16 54 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 55 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 Total: -1.00 -72.83 409.42 2.16 -70.67 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.12 Total: 18.79 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.53 Total: 8.90 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.05 Total: -109.16 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.47 Total: -37.84 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.83 2.16 -70.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073905483.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.547 kcal (2) G-P(sol) polarization free energy of solvation -72.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds