Wall clock time and date at job start Tue Mar 31 2020 21:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53131 * 1 3 3 C 1.54488 * 107.29713 * 2 1 4 4 C 1.52461 * 110.00387 * 116.79244 * 2 1 3 5 5 C 1.52701 * 110.78264 * 72.41686 * 4 2 1 6 6 C 1.51080 * 109.09989 * 180.51999 * 5 4 2 7 7 O 1.21281 * 120.00311 * 0.60138 * 6 5 4 8 8 N 1.34777 * 120.00216 * 180.60053 * 6 5 4 9 9 C 1.46506 * 120.00239 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.63965 * 31.85968 * 9 8 6 11 11 C 1.54337 * 110.84851 * 268.69303 * 9 8 6 12 12 N 1.47020 * 107.26210 * 219.67060 * 11 9 8 13 13 C 1.36945 * 125.64525 * 178.85184 * 12 11 9 14 14 H 1.07997 * 119.99756 * 359.71717 * 13 12 11 15 15 C 1.38805 * 119.99878 * 179.71622 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47420 * 108.70626 * 358.58837 * 12 11 9 22 22 C 1.54914 * 104.83159 * 24.35323 * 21 12 11 23 23 H 1.08999 * 110.99936 * 81.10677 * 22 21 12 24 24 O 1.42894 * 111.00321 * 204.91376 * 22 21 12 25 25 C 1.52703 * 108.84645 * 61.56496 * 5 4 2 26 26 C 1.52448 * 110.80129 * 298.47796 * 25 5 4 27 27 C 1.53141 * 110.00634 * 287.48656 * 26 25 5 28 28 C 1.54495 * 107.61672 * 170.90415 * 26 25 5 29 29 C 1.51736 * 111.12016 * 242.19508 * 2 1 3 30 30 H 1.09004 * 109.47014 * 303.20599 * 1 2 3 31 31 H 1.09003 * 109.47073 * 63.20719 * 1 2 3 32 32 H 1.09000 * 109.47294 * 183.20898 * 1 2 3 33 33 H 1.08999 * 109.46762 * 178.35282 * 3 2 1 34 34 H 1.09000 * 109.46706 * 298.34594 * 3 2 1 35 35 H 1.08996 * 109.47411 * 58.35247 * 3 2 1 36 36 H 1.09306 * 109.43082 * 311.87453 * 4 2 1 37 37 H 1.09301 * 109.43671 * 192.98774 * 4 2 1 38 38 H 1.08674 * 110.48905 * 300.07486 * 5 4 2 39 39 H 0.97006 * 120.00243 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.98748 * 100.19776 * 11 9 8 41 41 H 1.09001 * 109.78230 * 339.03245 * 11 9 8 42 42 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 43 43 H 1.08999 * 110.36700 * 143.19620 * 21 12 11 44 44 H 1.08998 * 110.36896 * 265.40859 * 21 12 11 45 45 H 0.96700 * 114.00147 * 298.54936 * 24 22 21 46 46 H 1.09297 * 109.29073 * 59.16488 * 25 5 4 47 47 H 1.09313 * 109.25411 * 177.85393 * 25 5 4 48 48 H 1.09003 * 109.46944 * 185.43140 * 27 26 25 49 49 H 1.08999 * 109.46724 * 305.43045 * 27 26 25 50 50 H 1.08992 * 109.46836 * 65.43278 * 27 26 25 51 51 H 1.09005 * 109.46712 * 298.17852 * 28 26 25 52 52 H 1.09004 * 109.46983 * 58.16869 * 28 26 25 53 53 H 1.09002 * 109.47500 * 178.17605 * 28 26 25 54 54 H 1.10238 * 108.62845 * 42.04972 * 29 2 1 55 55 H 1.10262 * 108.55925 * 156.85772 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5313 0.0000 0.0000 3 6 1.9906 1.4750 0.0000 4 6 2.0529 -0.6458 1.2788 5 6 1.8329 -2.1566 1.2515 6 6 2.3505 -2.7548 2.5387 7 8 2.8330 -2.0380 3.3897 8 7 2.2761 -4.0852 2.7413 9 6 2.7785 -4.6654 3.9893 10 1 2.6513 -3.9669 4.8163 11 6 4.2591 -5.0771 3.8467 12 7 4.4263 -6.3557 4.5528 13 6 5.5906 -7.0709 4.6436 14 1 6.4879 -6.7045 4.1672 15 6 5.6174 -8.2667 5.3479 16 7 4.5237 -8.7135 5.9280 17 14 7.2055 -9.2427 5.4711 18 1 6.9705 -10.4714 6.2712 19 1 7.6627 -9.6182 4.1091 20 1 8.2457 -8.4139 6.1316 21 6 3.1347 -6.7373 5.1522 22 6 2.0691 -6.0113 4.2935 23 1 1.8654 -6.5626 3.3756 24 8 0.8680 -5.8004 5.0383 25 6 2.6109 -2.7472 0.0777 26 6 2.1107 -2.1773 -1.2448 27 6 0.7347 -2.7603 -1.5796 28 6 3.0860 -2.6377 -2.3510 29 6 2.0781 -0.6602 -1.2520 30 1 -0.3633 0.5628 0.8599 31 1 -0.3633 0.4632 -0.9174 32 1 -0.3634 -1.0260 0.0575 33 1 3.0795 1.5164 0.0295 34 1 1.6328 1.9669 -0.9045 35 1 1.5839 1.9823 0.8748 36 1 1.5307 -0.2207 2.1399 37 1 3.1210 -0.4382 1.3816 38 1 0.7745 -2.3854 1.1600 39 1 1.8905 -4.6587 2.0606 40 1 4.9014 -4.3192 4.2951 41 1 4.5078 -5.2003 2.7926 42 1 4.5424 -9.5494 6.4199 43 1 2.9951 -7.8169 5.0972 44 1 3.0830 -6.4012 6.1878 45 1 0.4411 -6.6157 5.3354 46 1 3.6726 -2.5160 0.1953 47 1 2.4890 -3.8335 0.0746 48 1 0.4284 -2.4230 -2.5698 49 1 0.7886 -3.8489 -1.5670 50 1 0.0080 -2.4239 -0.8402 51 1 4.0798 -2.2384 -2.1484 52 1 3.1285 -3.7267 -2.3677 53 1 2.7378 -2.2727 -3.3174 54 1 1.4813 -0.3250 -2.1162 55 1 3.1011 -0.2880 -1.4269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077454277.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:04 Heat of formation + Delta-G solvation = -112.419857 kcal Electronic energy + Delta-G solvation = -31561.395124 eV Core-core repulsion = 27596.702548 eV Total energy + Delta-G solvation = -3964.692576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.70003 -40.31232 -39.15343 -36.70150 -35.99354 -35.48077 -33.92025 -33.16092 -30.19979 -28.78374 -28.66244 -27.45727 -27.39159 -27.10150 -26.47035 -24.52947 -22.49156 -21.82117 -21.12731 -20.60804 -19.10218 -18.96491 -18.38993 -17.83727 -17.34286 -16.65368 -16.32430 -15.98293 -15.71472 -15.44936 -15.38518 -15.05547 -14.96429 -14.80427 -14.70201 -14.38830 -14.06532 -13.99226 -13.73312 -13.48513 -13.22444 -13.11873 -13.04104 -12.89900 -12.86316 -12.71162 -12.55102 -12.52710 -12.47896 -12.11546 -12.08787 -11.94435 -11.90161 -11.79488 -11.50553 -11.46356 -11.40239 -11.08062 -11.04284 -10.78520 -10.78173 -10.56037 -10.16339 -8.99465 -7.83572 -5.30110 1.46463 1.49697 1.55961 1.62512 2.08080 2.46243 3.05888 3.27812 3.48839 3.61079 3.64504 3.67580 3.84450 3.99202 4.06011 4.09371 4.13825 4.19964 4.23058 4.29001 4.38527 4.40832 4.47822 4.57016 4.65549 4.73805 4.78041 4.81044 4.87978 4.91211 4.95293 4.96873 4.97991 5.01514 5.10913 5.14574 5.15186 5.19661 5.21169 5.26273 5.35450 5.38128 5.41698 5.44730 5.47998 5.50137 5.58832 5.63390 5.65396 5.69348 6.19172 6.54022 6.83910 7.02940 7.24993 7.66969 8.29377 9.18080 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.002682 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.933289 B =10436.478573 C =10957.808479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.086 4.086 6 C 0.510 3.490 7 O -0.586 6.586 8 N -0.702 5.702 9 C 0.154 3.846 10 H 0.073 0.927 11 C 0.133 3.867 12 N -0.618 5.618 13 C -0.247 4.247 14 H 0.080 0.920 15 C -0.060 4.060 16 N -0.946 5.946 17 Si 0.984 3.016 18 H -0.290 1.290 19 H -0.273 1.273 20 H -0.283 1.283 21 C 0.133 3.867 22 C 0.093 3.907 23 H 0.087 0.913 24 O -0.568 6.568 25 C -0.097 4.097 26 C -0.050 4.050 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.093 4.093 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.011 0.989 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.092 0.908 44 H -0.010 1.010 45 H 0.397 0.603 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.046 0.954 52 H 0.056 0.944 53 H 0.065 0.935 54 H 0.075 0.925 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 13.601 -19.234 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.121 4.121 5 C -0.107 4.107 6 C 0.299 3.701 7 O -0.466 6.466 8 N -0.353 5.353 9 C 0.048 3.952 10 H 0.091 0.909 11 C 0.006 3.994 12 N -0.346 5.346 13 C -0.375 4.375 14 H 0.098 0.902 15 C -0.253 4.253 16 N -0.595 5.595 17 Si 0.811 3.189 18 H -0.215 1.215 19 H -0.198 1.198 20 H -0.209 1.209 21 C 0.007 3.993 22 C 0.032 3.968 23 H 0.105 0.895 24 O -0.376 6.376 25 C -0.135 4.135 26 C -0.050 4.050 27 C -0.203 4.203 28 C -0.203 4.203 29 C -0.130 4.130 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.136 0.864 39 H 0.252 0.748 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.008 0.992 45 H 0.247 0.753 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.065 0.935 52 H 0.075 0.925 53 H 0.084 0.916 54 H 0.094 0.906 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.275 14.559 -18.677 26.228 hybrid contribution 0.994 -1.326 0.809 1.844 sum -10.281 13.233 -17.868 24.497 Atomic orbital electron populations 1.22064 0.93566 1.02332 1.02065 1.20333 0.96277 0.95118 0.93496 1.22278 1.00711 0.95139 1.02051 1.21254 1.00883 0.92352 0.97659 1.21192 1.02377 0.96756 0.90350 1.21639 0.77350 0.81665 0.89461 1.90677 1.46987 1.61223 1.47706 1.45817 1.62356 1.07888 1.19267 1.21516 0.92218 0.94048 0.87432 0.90899 1.21664 0.94153 0.87470 0.96118 1.44535 1.07600 1.21075 1.61353 1.19408 0.88232 1.01504 1.28402 0.90194 1.25630 1.01013 0.99049 0.99572 1.69946 1.27488 1.22546 1.39528 0.85081 0.78441 0.77502 0.77853 1.21541 1.19849 1.20903 1.22399 0.83512 1.00987 0.92426 1.23256 0.84670 0.94115 0.94775 0.89508 1.86380 1.38683 1.37461 1.75077 1.21513 0.98815 1.00444 0.92702 1.20296 0.96531 0.94777 0.93426 1.22085 0.95333 1.00831 1.02023 1.22292 0.98402 1.01304 0.98260 1.21324 1.01408 0.93458 0.96817 0.93176 0.91390 0.91792 0.93434 0.91373 0.93057 0.92850 0.93400 0.86391 0.74843 0.97126 0.94006 0.93914 0.88990 0.99176 0.75301 0.92971 0.90585 0.91703 0.92300 0.91831 0.93466 0.92512 0.91607 0.90640 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.98 72.03 0.57 -1.24 16 2 C -0.05 -0.79 0.71 -52.23 -0.04 -0.83 16 3 C -0.14 -2.12 8.06 72.49 0.58 -1.54 16 4 C -0.08 -1.80 3.09 30.32 0.09 -1.71 16 5 C -0.09 -1.78 2.32 -11.62 -0.03 -1.81 16 6 C 0.51 15.60 7.14 87.78 0.63 16.22 16 7 O -0.59 -23.58 15.57 -3.03 -0.05 -23.63 16 8 N -0.70 -20.73 4.99 -436.47 -2.18 -22.91 16 9 C 0.15 5.94 3.05 46.18 0.14 6.08 16 10 H 0.07 3.24 7.55 -2.39 -0.02 3.23 16 11 C 0.13 5.93 7.00 86.73 0.61 6.54 16 12 N -0.62 -32.34 3.39 -691.97 -2.35 -34.68 16 13 C -0.25 -13.92 10.27 84.03 0.86 -13.06 16 14 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 15 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 16 N -0.95 -54.74 10.09 21.65 0.22 -54.52 16 17 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 C 0.13 6.46 5.62 86.86 0.49 6.94 16 22 C 0.09 3.42 4.06 31.99 0.13 3.54 16 23 H 0.09 2.82 8.01 -2.39 -0.02 2.80 16 24 O -0.57 -18.95 13.47 -148.98 -2.01 -20.95 16 25 C -0.10 -1.72 3.69 30.31 0.11 -1.61 16 26 C -0.05 -0.67 0.71 -52.22 -0.04 -0.71 16 27 C -0.15 -1.56 8.00 72.03 0.58 -0.99 16 28 C -0.15 -1.88 8.07 72.49 0.59 -1.30 16 29 C -0.09 -1.23 3.48 29.77 0.10 -1.12 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.68 8.07 -2.39 -0.02 0.66 16 32 H 0.06 0.76 4.61 -2.39 -0.01 0.75 16 33 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 1.31 8.03 -2.22 -0.02 1.30 16 37 H 0.05 1.23 8.05 -2.23 -0.02 1.21 16 38 H 0.12 1.99 6.21 -2.56 -0.02 1.98 16 39 H 0.41 9.41 7.97 -92.70 -0.74 8.67 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.09 4.87 5.87 -2.39 -0.01 4.86 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.40 9.91 9.11 -74.06 -0.67 9.23 16 46 H 0.05 1.12 8.10 -2.23 -0.02 1.10 16 47 H 0.08 1.24 7.47 -2.22 -0.02 1.22 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 50 H 0.06 0.66 4.68 -2.39 -0.01 0.65 16 51 H 0.05 0.68 8.05 -2.38 -0.02 0.66 16 52 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.07 0.80 7.93 -1.72 -0.01 0.79 16 55 H 0.05 0.78 7.59 -1.71 -0.01 0.77 16 Total: -1.00 -71.09 409.94 0.99 -70.10 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.52 Total: 28.98 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.85 Total: 10.55 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.31 Total: -112.11 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.05 Total: -44.58 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.09 0.99 -70.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077454277.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.318 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds