Wall clock time and date at job start Tue Mar 31 2020 21:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.51991 * 2 1 4 4 C 1.53179 * 109.52284 * 120.12351 * 2 1 3 5 5 C 1.53174 * 109.03418 * 62.92560 * 4 2 1 6 6 C 1.53094 * 109.16322 * 56.98185 * 5 4 2 7 7 H 1.09002 * 109.47964 * 62.38346 * 6 5 4 8 8 C 1.53000 * 109.48134 * 182.40660 * 6 5 4 9 9 C 1.50697 * 109.47058 * 185.00186 * 8 6 5 10 10 O 1.21273 * 120.00361 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99941 * 180.02562 * 9 8 6 12 12 C 1.46492 * 120.00132 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47152 * 34.99769 * 12 11 9 14 14 C 1.52999 * 109.47381 * 274.99545 * 12 11 9 15 15 C 1.52997 * 109.47592 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 12 17 17 C 1.53002 * 109.46972 * 300.00293 * 16 15 14 18 18 C 1.52997 * 109.47415 * 59.99860 * 17 16 15 19 19 H 1.09000 * 109.47140 * 59.99976 * 18 17 16 20 20 N 1.46500 * 109.47204 * 180.02562 * 18 17 16 21 21 C 1.36931 * 120.00263 * 275.00118 * 20 18 17 22 22 H 1.08001 * 119.99686 * 359.97438 * 21 20 18 23 23 C 1.38815 * 120.00367 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00265 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99714 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47269 * 90.00112 * 25 23 21 27 27 H 1.48504 * 109.46916 * 210.00243 * 25 23 21 28 28 H 1.48494 * 109.47236 * 330.00011 * 25 23 21 29 29 O 1.42901 * 109.41679 * 302.38789 * 6 5 4 30 30 C 1.42908 * 114.09338 * 61.15591 * 29 6 5 31 31 H 1.09000 * 109.47263 * 299.87314 * 1 2 3 32 32 H 1.09002 * 109.47008 * 59.87775 * 1 2 3 33 33 H 1.09000 * 109.46744 * 179.87557 * 1 2 3 34 34 H 1.08997 * 109.46886 * 180.12692 * 3 2 1 35 35 H 1.09007 * 109.46823 * 300.12376 * 3 2 1 36 36 H 1.08995 * 109.46979 * 60.12373 * 3 2 1 37 37 H 1.09007 * 109.54080 * 303.06061 * 4 2 1 38 38 H 1.08995 * 109.54283 * 182.79390 * 4 2 1 39 39 H 1.09006 * 109.52456 * 297.07452 * 5 4 2 40 40 H 1.09004 * 109.52013 * 176.88556 * 5 4 2 41 41 H 1.09000 * 109.46985 * 64.99735 * 8 6 5 42 42 H 1.09007 * 109.47091 * 305.00183 * 8 6 5 43 43 H 0.97006 * 119.99905 * 359.97438 * 11 9 8 44 44 H 1.09000 * 109.47160 * 300.00219 * 14 12 11 45 45 H 1.09002 * 109.46719 * 59.99939 * 14 12 11 46 46 H 1.09000 * 109.47140 * 300.00346 * 15 14 12 47 47 H 1.09001 * 109.47375 * 180.02562 * 15 14 12 48 48 H 1.08992 * 109.47534 * 180.02562 * 16 15 14 49 49 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 50 50 H 1.09000 * 109.46986 * 299.99742 * 17 16 15 51 51 H 1.09001 * 109.47601 * 180.02562 * 17 16 15 52 52 H 0.97001 * 119.99882 * 94.99976 * 20 18 17 53 53 H 0.96997 * 119.99852 * 179.97438 * 24 23 21 54 54 H 1.09002 * 109.47497 * 178.86100 * 30 29 6 55 55 H 1.08996 * 109.49123 * 58.83275 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0420 -0.7246 1.2487 5 6 1.5877 -2.1866 1.1994 6 6 2.0971 -2.8277 -0.0941 7 1 3.1871 -2.8198 -0.0990 8 6 1.5970 -4.2711 -0.1795 9 6 2.1977 -4.9401 -1.3889 10 8 2.9512 -4.3231 -2.1116 11 7 1.8967 -6.2239 -1.6680 12 6 2.4802 -6.8741 -2.8439 13 1 3.4934 -6.5033 -2.9988 14 6 1.6284 -6.5603 -4.0755 15 6 2.2381 -7.2388 -5.3038 16 6 2.2776 -8.7523 -5.0833 17 6 3.1294 -9.0662 -3.8517 18 6 2.5197 -8.3877 -2.6235 19 1 1.5066 -8.7589 -2.4687 20 7 3.3357 -8.6878 -1.4443 21 6 3.1278 -9.8464 -0.7446 22 1 2.3620 -10.5387 -1.0618 23 6 3.9006 -10.1305 0.3730 24 7 3.7011 -11.2443 1.0452 25 14 5.2247 -8.9326 0.9219 26 1 4.6438 -7.9572 1.8791 27 1 6.3248 -9.6798 1.5830 28 1 5.7582 -8.2089 -0.2598 29 8 1.6099 -2.0875 -1.2151 30 6 2.0417 -0.7255 -1.2472 31 1 -0.3634 0.5119 0.8911 32 1 -0.3633 0.5157 -0.8889 33 1 -0.3633 -1.0277 -0.0022 34 1 3.1313 1.4411 -0.0023 35 1 1.6765 1.9569 -0.8889 36 1 1.6802 1.9556 0.8911 37 1 1.6356 -0.2463 2.1400 38 1 3.1308 -0.6816 1.2745 39 1 0.4988 -2.2308 1.2236 40 1 1.9942 -2.7234 2.0567 41 1 0.5103 -4.2747 -0.2645 42 1 1.8929 -4.8120 0.7194 43 1 1.2937 -6.7173 -1.0901 44 1 0.6152 -6.9311 -3.9206 45 1 1.6006 -5.4820 -4.2328 46 1 3.2512 -6.8676 -5.4585 47 1 1.6315 -7.0148 -6.1812 48 1 2.7123 -9.2357 -5.9581 49 1 1.2645 -9.1234 -4.9285 50 1 4.1425 -8.6950 -4.0065 51 1 3.1580 -10.1445 -3.6949 52 1 4.0233 -8.0658 -1.1593 53 1 4.2414 -11.4430 1.8259 54 1 1.6454 -0.2395 -2.1387 55 1 3.1309 -0.6897 -1.2673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085278245.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:26 Heat of formation + Delta-G solvation = -125.721913 kcal Electronic energy + Delta-G solvation = -31290.082049 eV Core-core repulsion = 27324.812653 eV Total energy + Delta-G solvation = -3965.269397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.36028 -40.62150 -39.15583 -36.26918 -35.93043 -35.03716 -34.14613 -33.32627 -31.26748 -30.35498 -29.36091 -28.17259 -26.92669 -25.49440 -25.19550 -23.46882 -22.55183 -22.38391 -21.36190 -20.76321 -19.82957 -19.65589 -17.89056 -17.46470 -17.39352 -16.76098 -16.55020 -16.05925 -15.94369 -15.87931 -15.36849 -15.15197 -15.05316 -14.84124 -14.69862 -14.51540 -14.47302 -14.01947 -13.74788 -13.61540 -13.53707 -13.09798 -13.04599 -12.98286 -12.89700 -12.82981 -12.76645 -12.46136 -12.38900 -12.16610 -12.08038 -11.95283 -11.83084 -11.77755 -11.71034 -11.49032 -11.36981 -11.14622 -11.11127 -11.01506 -10.66846 -10.21392 -9.91098 -9.30427 -8.01357 -5.33217 1.34870 1.37610 1.43623 1.76580 2.29110 2.46619 2.85165 3.30085 3.46375 3.66091 3.71509 3.78029 3.78942 3.83210 4.04229 4.09657 4.15851 4.18324 4.25609 4.27238 4.39519 4.41341 4.48484 4.54208 4.57112 4.61928 4.65391 4.67646 4.72562 4.79407 4.81282 4.87886 4.93449 4.95125 5.00701 5.02212 5.04476 5.13179 5.16512 5.21746 5.22226 5.27275 5.29830 5.30369 5.39063 5.46118 5.53465 5.54795 5.68929 5.79594 6.22740 6.35679 6.67524 7.07570 7.37020 7.83864 8.02515 9.20099 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003211 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.907326 B = 8717.255210 C =10539.946664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.147 4.147 6 C 0.108 3.892 7 H 0.040 0.960 8 C -0.133 4.133 9 C 0.510 3.490 10 O -0.576 6.576 11 N -0.714 5.714 12 C 0.147 3.853 13 H 0.057 0.943 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.130 4.130 18 C 0.176 3.824 19 H 0.060 0.940 20 N -0.748 5.748 21 C -0.216 4.216 22 H 0.065 0.935 23 C -0.056 4.056 24 N -0.981 5.981 25 Si 0.943 3.057 26 H -0.275 1.275 27 H -0.299 1.299 28 H -0.269 1.269 29 O -0.383 6.383 30 C 0.069 3.931 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.409 0.591 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.047 0.953 51 H 0.048 0.952 52 H 0.359 0.641 53 H 0.256 0.744 54 H 0.093 0.907 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 23.462 -4.550 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.148 4.148 5 C -0.185 4.185 6 C 0.050 3.950 7 H 0.058 0.942 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.365 5.365 12 C 0.042 3.958 13 H 0.075 0.925 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.171 4.171 18 C 0.068 3.932 19 H 0.078 0.922 20 N -0.390 5.390 21 C -0.347 4.347 22 H 0.083 0.917 23 C -0.248 4.248 24 N -0.632 5.632 25 Si 0.772 3.228 26 H -0.201 1.201 27 H -0.226 1.226 28 H -0.195 1.195 29 O -0.303 6.303 30 C -0.007 4.007 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.245 0.755 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.192 0.808 53 H 0.065 0.935 54 H 0.111 0.889 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.947 23.616 -5.129 25.439 hybrid contribution 1.254 -0.098 1.064 1.647 sum -6.693 23.518 -4.065 24.788 Atomic orbital electron populations 1.21783 0.93372 1.01954 1.01946 1.21197 0.97163 0.96289 0.95271 1.21772 1.00902 0.94024 1.02738 1.21675 1.00544 0.94630 0.97981 1.22246 1.02741 0.96653 0.96840 1.21742 0.96776 0.89789 0.86728 0.94210 1.21823 1.03954 0.94601 0.96916 1.21043 0.80712 0.81538 0.86961 1.90654 1.38035 1.64681 1.52171 1.46021 1.49370 1.12313 1.28755 1.21119 0.97092 0.91881 0.85749 0.92454 1.21779 0.99512 1.00272 0.93719 1.21475 1.01109 0.94884 0.97349 1.21508 1.00271 0.96063 0.96972 1.22076 0.99312 1.00167 0.95501 1.20639 0.94696 0.91575 0.86276 0.92172 1.42802 1.42146 1.22519 1.31495 1.18990 1.14187 0.96563 1.04920 0.91710 1.25285 1.01949 0.98752 0.98776 1.69848 1.44593 1.26876 1.21866 0.85600 0.79880 0.79056 0.78280 1.20085 1.22645 1.19506 1.87928 1.73544 1.22819 1.45963 1.22679 0.97849 0.81776 0.98434 0.91739 0.92658 0.92799 0.92767 0.91971 0.91332 0.89898 0.92336 0.89803 0.89812 0.86147 0.85967 0.75498 0.90553 0.92561 0.92636 0.89675 0.90807 0.91212 0.93391 0.93347 0.80821 0.93474 0.88869 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.07 71.98 0.58 -1.36 16 2 C -0.10 -1.54 0.78 -52.09 -0.04 -1.58 16 3 C -0.14 -1.69 8.49 71.98 0.61 -1.08 16 4 C -0.11 -1.71 4.81 30.71 0.15 -1.56 16 5 C -0.15 -2.51 5.05 30.68 0.16 -2.36 16 6 C 0.11 2.55 2.19 30.63 0.07 2.62 16 7 H 0.04 1.11 7.95 -2.39 -0.02 1.10 16 8 C -0.13 -3.08 5.41 29.85 0.16 -2.92 16 9 C 0.51 15.88 7.67 87.66 0.67 16.56 16 10 O -0.58 -22.17 15.08 10.73 0.16 -22.01 16 11 N -0.71 -21.50 4.91 -442.55 -2.17 -23.68 16 12 C 0.15 4.71 1.97 44.99 0.09 4.80 16 13 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 14 C -0.11 -3.00 5.49 30.59 0.17 -2.83 16 15 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 16 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 17 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 18 C 0.18 6.31 2.29 44.99 0.10 6.42 16 19 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 20 N -0.75 -33.48 4.76 -322.94 -1.54 -35.02 16 21 C -0.22 -11.67 10.41 84.04 0.87 -10.80 16 22 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 23 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 24 N -0.98 -61.39 13.97 21.65 0.30 -61.08 16 25 Si 0.94 45.72 27.74 68.60 1.90 47.62 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 28 H -0.27 -12.52 6.52 99.48 0.65 -11.87 16 29 O -0.38 -10.09 9.06 -135.25 -1.23 -11.31 16 30 C 0.07 1.46 5.54 72.01 0.40 1.86 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.90 6.14 -2.39 -0.01 0.89 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.31 6.63 -2.38 -0.02 1.29 16 40 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.41 11.30 8.60 -92.70 -0.80 10.50 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.36 16.47 5.66 -92.71 -0.52 15.95 16 53 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 54 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 55 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -70.10 417.14 1.89 -68.21 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.53 Total: 41.31 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.99 Total: -4.04 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -3.41 Total: -119.78 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.06 Total: -33.32 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -70.10 1.89 -68.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085278245.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.512 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds