Wall clock time and date at job start Tue Mar 31 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 110.56933 * 2 1 4 4 C 1.54478 * 110.51267 * 237.31880 * 2 1 3 5 5 O 1.44427 * 104.80422 * 265.33702 * 4 2 1 6 6 C 1.44424 * 105.27458 * 319.48735 * 5 4 2 7 7 H 1.09000 * 110.46799 * 281.62854 * 6 5 4 8 8 C 1.53006 * 110.37566 * 159.34226 * 6 5 4 9 9 C 1.50703 * 109.46716 * 69.61799 * 8 6 5 10 10 O 1.21276 * 120.00121 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99525 * 180.02562 * 9 8 6 12 12 C 1.47129 * 120.17391 * 359.97438 * 11 9 8 13 13 C 1.53632 * 107.52201 * 107.85933 * 12 11 9 14 14 C 1.53485 * 108.41490 * 69.76362 * 13 12 11 15 15 C 1.52447 * 109.15680 * 245.78977 * 14 13 12 16 16 C 1.53131 * 109.64519 * 43.95519 * 15 14 13 17 17 C 1.53352 * 109.36792 * 77.10317 * 16 15 14 18 18 H 1.09000 * 109.81570 * 47.42508 * 17 16 15 19 19 N 1.46497 * 109.64948 * 167.94540 * 17 16 15 20 20 C 1.36943 * 120.00286 * 203.97248 * 19 17 16 21 21 H 1.07998 * 119.99420 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00239 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99772 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00135 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47339 * 60.00031 * 24 22 20 26 26 H 1.48502 * 109.47229 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47096 * 299.99772 * 24 22 20 28 28 C 1.46071 * 120.16943 * 180.02562 * 11 9 8 29 29 C 1.54480 * 104.80324 * 40.51086 * 6 5 4 30 30 H 1.09004 * 109.47011 * 297.32470 * 1 2 3 31 31 H 1.09001 * 109.47029 * 57.32375 * 1 2 3 32 32 H 1.08994 * 109.47389 * 177.32304 * 1 2 3 33 33 H 1.09000 * 109.47710 * 182.67494 * 3 2 1 34 34 H 1.09008 * 109.47359 * 302.67950 * 3 2 1 35 35 H 1.09005 * 109.47546 * 62.67824 * 3 2 1 36 36 H 1.09003 * 110.37078 * 24.16401 * 4 2 1 37 37 H 1.08997 * 110.37168 * 146.50694 * 4 2 1 38 38 H 1.09004 * 109.46615 * 309.61953 * 8 6 5 39 39 H 1.08999 * 109.47118 * 189.61886 * 8 6 5 40 40 H 1.09006 * 109.85099 * 348.36036 * 12 11 9 41 41 H 1.08999 * 109.85811 * 227.36596 * 12 11 9 42 42 H 1.08992 * 109.67321 * 310.03384 * 13 12 11 43 43 H 1.08997 * 109.70430 * 189.50793 * 13 12 11 44 44 H 1.08997 * 109.52759 * 125.88349 * 14 13 12 45 45 H 1.08998 * 109.52644 * 5.69628 * 14 13 12 46 46 H 1.09002 * 109.43818 * 164.00082 * 15 14 13 47 47 H 1.08999 * 109.43584 * 283.91801 * 15 14 13 48 48 H 1.08995 * 109.49084 * 197.00310 * 16 15 14 49 49 H 1.08999 * 109.49422 * 317.08637 * 16 15 14 50 50 H 0.97001 * 119.99688 * 23.96701 * 19 17 16 51 51 H 0.96997 * 119.99864 * 179.97438 * 23 22 20 52 52 H 1.09006 * 109.36327 * 53.23469 * 28 11 9 53 53 H 1.09004 * 109.36579 * 172.83757 * 28 11 9 54 54 H 1.08997 * 110.51493 * 94.66913 * 29 6 5 55 55 H 1.09002 * 110.50919 * 217.37571 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4324 0.0000 4 6 2.0713 -0.7812 -1.2178 5 8 2.3069 -2.1178 -0.7237 6 6 2.8756 -1.9423 0.5922 7 1 3.9304 -1.6772 0.5193 8 6 2.7040 -3.2168 1.4210 9 6 3.5911 -4.3008 0.8650 10 8 4.2912 -4.0762 -0.0995 11 7 3.6056 -5.5201 1.4390 12 6 2.7573 -5.7969 2.6088 13 6 1.6157 -6.7148 2.1456 14 6 2.2038 -8.0958 1.8248 15 6 2.0603 -8.3659 0.3313 16 6 2.4515 -7.1136 -0.4583 17 6 3.9797 -6.9902 -0.4916 18 1 4.4221 -7.9491 -0.7616 19 7 4.3707 -5.9744 -1.4721 20 6 5.6166 -6.0135 -2.0390 21 1 6.3112 -6.7931 -1.7629 22 6 5.9869 -5.0513 -2.9684 23 7 5.1401 -4.1015 -3.3053 24 14 7.6861 -5.1051 -3.7422 25 1 7.8595 -6.3896 -4.4671 26 1 7.8321 -3.9758 -4.6954 27 1 8.7176 -4.9932 -2.6797 28 6 4.4644 -6.5734 0.9035 29 6 2.0713 -0.7814 1.2181 30 1 -0.3633 0.4718 0.9130 31 1 -0.3633 0.5548 -0.8650 32 1 -0.3634 -1.0265 -0.0480 33 1 3.1562 1.4120 -0.0480 34 1 1.6756 1.9676 -0.8650 35 1 1.7536 1.9384 0.9130 36 1 1.3310 -0.7975 -2.0177 37 1 3.0023 -0.3373 -1.5700 38 1 1.6640 -3.5407 1.3782 39 1 2.9799 -3.0169 2.4564 40 1 2.3477 -4.8647 2.9980 41 1 3.3429 -6.2956 3.3811 42 1 1.1491 -6.2983 1.2530 43 1 0.8737 -6.8072 2.9386 44 1 1.6666 -8.8600 2.3865 45 1 3.2586 -8.1152 2.0988 46 1 2.7124 -9.1920 0.0478 47 1 1.0259 -8.6271 0.1078 48 1 2.0719 -7.1926 -1.4769 49 1 2.0253 -6.2328 0.0219 50 1 3.7469 -5.2741 -1.7199 51 1 5.3989 -3.4289 -3.9545 52 1 5.4883 -6.2055 0.8361 53 1 4.4356 -7.4364 1.5688 54 1 1.2490 -1.1675 1.8203 55 1 2.7219 -0.1471 1.8203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088346563.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:18 Heat of formation + Delta-G solvation = -66.360529 kcal Electronic energy + Delta-G solvation = -33054.515262 eV Core-core repulsion = 29091.819968 eV Total energy + Delta-G solvation = -3962.695294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.44889 -40.59824 -38.39312 -36.32768 -35.40259 -34.79864 -33.68702 -32.96382 -30.99951 -29.13152 -28.20295 -27.79405 -27.36446 -26.60875 -25.36218 -23.96692 -22.73863 -21.59739 -20.94861 -20.30036 -19.13298 -18.91206 -17.71775 -17.22463 -17.01601 -16.67012 -16.35041 -16.26963 -16.07250 -15.83136 -15.28079 -14.94906 -14.78789 -14.66998 -14.41705 -14.30859 -14.20474 -13.89349 -13.63318 -13.40919 -13.17654 -12.98508 -12.88235 -12.75947 -12.68320 -12.58519 -12.49977 -12.38440 -12.28993 -12.14830 -11.88939 -11.75221 -11.62795 -11.60551 -11.53151 -11.46408 -11.36295 -11.09494 -10.88566 -10.75552 -10.47870 -10.10163 -9.34210 -8.49601 -7.67307 -4.90101 1.40852 1.45475 1.50243 2.20521 2.41406 2.65562 3.10493 3.53021 3.59875 3.69635 3.84543 3.95900 3.96840 4.06676 4.08459 4.14897 4.27904 4.32058 4.32753 4.38212 4.42032 4.49009 4.60032 4.61850 4.67677 4.68970 4.72169 4.76743 4.80886 4.82232 4.86094 4.89736 4.96064 5.01680 5.03453 5.07363 5.09268 5.16315 5.18537 5.23370 5.25790 5.29872 5.33700 5.46930 5.49102 5.53692 5.57892 5.63035 5.71409 6.06046 6.11473 6.46996 6.89007 7.55675 7.87452 8.45354 8.64855 9.53996 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.005464 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.150750 B = 5123.009199 C = 7763.598290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.135 4.135 4 C 0.047 3.953 5 O -0.384 6.384 6 C 0.088 3.912 7 H 0.031 0.969 8 C -0.120 4.120 9 C 0.467 3.533 10 O -0.506 6.506 11 N -0.610 5.610 12 C 0.103 3.897 13 C -0.142 4.142 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.121 4.121 17 C 0.156 3.844 18 H 0.037 0.963 19 N -0.708 5.708 20 C -0.220 4.220 21 H 0.059 0.941 22 C -0.073 4.073 23 N -0.947 5.947 24 Si 0.955 3.045 25 H -0.279 1.279 26 H -0.301 1.301 27 H -0.289 1.289 28 C 0.108 3.892 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.032 0.968 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.374 0.626 51 H 0.235 0.765 52 H 0.018 0.982 53 H 0.104 0.896 54 H 0.100 0.900 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 2.976 19.659 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 C -0.192 4.192 4 C -0.031 4.031 5 O -0.303 6.303 6 C 0.030 3.970 7 H 0.049 0.951 8 C -0.159 4.159 9 C 0.253 3.747 10 O -0.378 6.378 11 N -0.346 5.346 12 C -0.019 4.019 13 C -0.180 4.180 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.160 4.160 17 C 0.046 3.954 18 H 0.055 0.945 19 N -0.349 5.349 20 C -0.353 4.353 21 H 0.077 0.923 22 C -0.266 4.266 23 N -0.598 5.598 24 Si 0.786 3.214 25 H -0.206 1.206 26 H -0.228 1.228 27 H -0.216 1.216 28 C -0.018 4.018 29 C -0.167 4.167 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.093 0.907 50 H 0.208 0.792 51 H 0.044 0.956 52 H 0.036 0.964 53 H 0.122 0.878 54 H 0.119 0.881 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.621 2.847 18.958 23.517 hybrid contribution 1.476 0.472 -1.446 2.120 sum -12.145 3.319 17.512 21.568 Atomic orbital electron populations 1.21786 0.91988 1.01904 1.02918 1.21940 0.97623 0.96115 0.93717 1.21826 1.00239 0.93952 1.03169 1.23574 0.98827 0.83182 0.97472 1.89293 1.82537 1.26325 1.32154 1.22692 0.96017 0.95176 0.83132 0.95097 1.21791 1.01096 0.92263 1.00788 1.21351 0.84655 0.84431 0.84265 1.91138 1.41292 1.80403 1.24934 1.48020 1.44139 1.10559 1.31856 1.22268 0.91665 1.01224 0.86708 1.22432 0.98161 0.95402 1.02043 1.21863 1.01778 0.97556 0.94776 1.21420 1.01133 0.95879 0.96104 1.22065 0.95130 1.00126 0.98633 1.21055 0.94058 0.91266 0.89009 0.94481 1.42521 1.13984 1.31049 1.47306 1.19332 0.92697 1.07572 1.15699 0.92267 1.25318 1.00596 0.98383 1.02307 1.69941 1.35759 1.17251 1.36857 0.85484 0.81694 0.76407 0.77790 1.20603 1.22785 1.21636 1.22237 0.92405 0.90485 0.96684 1.23121 1.00454 0.95598 0.97481 0.90279 0.92192 0.93115 0.93665 0.91976 0.90123 0.89790 0.94941 0.87322 0.85002 0.87992 0.89296 0.92253 0.88477 0.90057 0.91340 0.92424 0.91456 0.95760 0.90676 0.79234 0.95615 0.96391 0.87844 0.88107 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.29 71.98 0.60 -1.72 16 2 C -0.09 -2.11 1.05 -51.17 -0.05 -2.16 16 3 C -0.13 -2.53 8.31 71.98 0.60 -1.93 16 4 C 0.05 1.56 6.73 72.48 0.49 2.04 16 5 O -0.38 -15.92 10.92 -142.68 -1.56 -17.47 16 6 C 0.09 2.87 2.74 31.10 0.09 2.96 16 7 H 0.03 1.24 7.90 -2.39 -0.02 1.22 16 8 C -0.12 -3.27 3.68 29.85 0.11 -3.16 16 9 C 0.47 17.95 6.78 87.66 0.59 18.55 16 10 O -0.51 -27.08 11.79 3.28 0.04 -27.04 16 11 N -0.61 -19.00 1.72 -819.15 -1.41 -20.41 16 12 C 0.10 1.90 5.83 86.47 0.50 2.40 16 13 C -0.14 -2.45 5.60 30.97 0.17 -2.28 16 14 C -0.12 -2.28 5.48 30.57 0.17 -2.12 16 15 C -0.11 -2.70 5.68 30.45 0.17 -2.52 16 16 C -0.12 -4.36 4.91 30.76 0.15 -4.21 16 17 C 0.16 6.72 2.68 45.26 0.12 6.84 16 18 H 0.04 1.64 7.84 -2.39 -0.02 1.62 16 19 N -0.71 -40.20 3.03 -321.65 -0.97 -41.17 16 20 C -0.22 -13.72 9.80 84.03 0.82 -12.90 16 21 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 22 C -0.07 -4.75 5.50 84.86 0.47 -4.28 16 23 N -0.95 -65.38 13.06 21.65 0.28 -65.09 16 24 Si 0.95 51.95 29.55 68.60 2.03 53.98 16 25 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.30 -16.52 7.11 99.48 0.71 -15.81 16 27 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 28 C 0.11 3.94 4.93 86.61 0.43 4.37 16 29 C -0.13 -2.76 5.92 31.61 0.19 -2.57 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 2.69 7.87 -2.39 -0.02 2.67 16 37 H 0.03 1.20 7.83 -2.39 -0.02 1.18 16 38 H 0.11 2.55 8.01 -2.38 -0.02 2.53 16 39 H 0.13 2.45 7.59 -2.39 -0.02 2.44 16 40 H 0.10 1.38 5.98 -2.38 -0.01 1.36 16 41 H 0.09 1.31 7.96 -2.39 -0.02 1.30 16 42 H 0.06 1.34 5.45 -2.39 -0.01 1.32 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.34 4.49 -2.39 -0.01 1.33 16 46 H 0.06 1.47 7.85 -2.39 -0.02 1.45 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.08 2.69 3.68 -2.39 -0.01 2.68 16 50 H 0.37 23.78 6.34 -92.71 -0.59 23.19 16 51 H 0.23 15.98 8.31 -92.71 -0.77 15.21 16 52 H 0.02 0.81 8.07 -2.38 -0.02 0.79 16 53 H 0.10 2.92 5.07 -2.38 -0.01 2.91 16 54 H 0.10 1.63 7.46 -2.39 -0.02 1.62 16 55 H 0.09 1.64 7.73 -2.39 -0.02 1.62 16 Total: -1.00 -87.65 399.94 4.30 -83.35 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.28 Total: 36.55 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.61 Total: -2.69 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -2.10 Total: -126.68 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.52 Total: -44.52 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.03 Total: 53.98 kcal Total: -87.65 4.30 -83.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088346563.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.990 kcal (2) G-P(sol) polarization free energy of solvation -87.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds