Wall clock time and date at job start Tue Mar 31 2020 20:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48499 * 109.46954 * 240.00184 * 3 2 1 5 5 H 1.48495 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47255 * 120.00229 * 3 2 1 7 7 C 1.38808 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00150 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.51917 * 34.87359 * 10 9 7 12 12 C 1.53806 * 109.52567 * 154.99734 * 10 9 7 13 13 C 1.52445 * 109.40200 * 197.80546 * 12 10 9 14 14 C 1.53949 * 110.73049 * 246.27339 * 13 12 10 15 15 C 1.52881 * 109.73338 * 44.36715 * 14 13 12 16 16 C 1.53438 * 109.38399 * 72.89710 * 15 14 13 17 17 N 1.45342 * 108.41416 * 282.28102 * 16 15 14 18 18 C 1.34779 * 120.36607 * 136.65921 * 17 16 15 19 19 O 1.21273 * 120.00093 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99767 * 359.97438 * 18 17 16 21 21 C 1.53000 * 109.46735 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47060 * 180.02562 * 21 20 18 23 23 H 1.09004 * 109.52491 * 304.87950 * 22 21 20 24 24 C 1.53174 * 109.52512 * 184.68820 * 22 21 20 25 25 C 1.53184 * 109.03896 * 183.11357 * 24 22 21 26 26 C 1.53093 * 109.15966 * 56.98101 * 25 24 22 27 27 O 1.42905 * 109.41377 * 302.38936 * 26 25 24 28 28 C 1.42899 * 114.09850 * 61.16388 * 27 26 25 29 29 C 1.46956 * 119.26693 * 316.93158 * 17 16 15 30 30 H 0.97002 * 119.99867 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00424 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47956 * 77.82762 * 12 10 9 33 33 H 1.08997 * 109.49076 * 317.79456 * 12 10 9 34 34 H 1.08998 * 109.22352 * 125.95676 * 13 12 10 35 35 H 1.08993 * 109.22622 * 6.59496 * 13 12 10 36 36 H 1.08999 * 109.42957 * 284.28937 * 14 13 12 37 37 H 1.08997 * 109.43223 * 164.45082 * 14 13 12 38 38 H 1.09001 * 109.48468 * 312.92388 * 15 14 13 39 39 H 1.08996 * 109.50229 * 192.88008 * 15 14 13 40 40 H 1.08997 * 109.67944 * 162.55164 * 16 15 14 41 41 H 1.09003 * 109.71190 * 42.02841 * 16 15 14 42 42 H 1.09001 * 109.46797 * 60.00350 * 20 18 17 43 43 H 1.08992 * 109.47518 * 300.00347 * 20 18 17 44 44 H 1.09002 * 109.47398 * 300.00410 * 21 20 18 45 45 H 1.09001 * 109.47194 * 60.00591 * 21 20 18 46 46 H 1.09005 * 109.54074 * 302.97885 * 24 22 21 47 47 H 1.08995 * 109.54362 * 63.24649 * 24 22 21 48 48 H 1.09003 * 109.51809 * 297.07661 * 25 24 22 49 49 H 1.08991 * 109.57484 * 176.91602 * 25 24 22 50 50 H 1.09004 * 109.47472 * 182.41110 * 26 25 24 51 51 H 1.08997 * 109.49581 * 62.38086 * 26 25 24 52 52 H 1.09002 * 109.48415 * 178.85572 * 28 27 26 53 53 H 1.09000 * 109.48343 * 58.82041 * 28 27 26 54 54 H 1.09006 * 109.53189 * 231.25205 * 29 17 16 55 55 H 1.08994 * 109.53546 * 351.47755 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9701 -3.5508 0.5869 12 6 1.1772 -4.7588 0.6122 13 6 2.0523 -5.9389 1.0190 14 6 1.7325 -7.1760 0.1603 15 6 1.6082 -6.7674 -1.3076 16 6 3.0015 -6.4535 -1.8686 17 7 3.3964 -5.1338 -1.4052 18 6 4.6486 -4.9156 -0.9568 19 8 4.9708 -3.8119 -0.5712 20 6 5.6478 -6.0435 -0.9335 21 6 6.9810 -5.5323 -0.3837 22 6 7.9957 -6.6772 -0.3606 23 1 7.5872 -7.5147 0.2050 24 6 9.2933 -6.1979 0.2971 25 6 10.3270 -7.3273 0.2445 26 6 10.5355 -7.7500 -1.2121 27 8 9.2850 -8.1548 -1.7729 28 6 8.2943 -7.1252 -1.7938 29 6 2.4136 -4.0414 -1.4253 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.4423 -5.0875 -0.1229 33 1 0.6633 -4.3675 1.4901 34 1 1.8727 -6.1740 2.0680 35 1 3.1004 -5.6710 0.8862 36 1 0.7933 -7.6165 0.4947 37 1 2.5333 -7.9078 0.2664 38 1 0.9767 -5.8824 -1.3865 39 1 1.1628 -7.5837 -1.8761 40 1 2.9698 -6.4656 -2.9580 41 1 3.7164 -7.1961 -1.5141 42 1 5.7926 -6.4215 -1.9455 43 1 5.2758 -6.8454 -0.2959 44 1 7.3532 -4.7301 -1.0210 45 1 6.8358 -5.1546 0.6284 46 1 9.6748 -5.3292 -0.2395 47 1 9.0985 -5.9302 1.3355 48 1 9.9665 -8.1781 0.8227 49 1 11.2715 -6.9776 0.6610 50 1 11.2382 -8.5824 -1.2519 51 1 10.9343 -6.9102 -1.7811 52 1 7.3824 -7.5073 -2.2527 53 1 8.6636 -6.2769 -2.3702 54 1 2.8402 -3.1766 -1.9336 55 1 1.5162 -4.3682 -1.9506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088407076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:57 Heat of formation + Delta-G solvation = -106.607385 kcal Electronic energy + Delta-G solvation = -31478.541617 eV Core-core repulsion = 27514.101088 eV Total energy + Delta-G solvation = -3964.440529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.57192 -40.35419 -38.82087 -36.67613 -36.03589 -35.06037 -33.97967 -33.56965 -31.29071 -30.91725 -28.76183 -27.42464 -26.11669 -25.94290 -25.30897 -23.82129 -22.69148 -21.99993 -20.99986 -20.89514 -19.58474 -19.09914 -18.12444 -17.43408 -17.18639 -17.00735 -16.91943 -16.39719 -15.99233 -15.75840 -15.53700 -15.38109 -15.22515 -15.10200 -14.65421 -14.37969 -14.26224 -14.08370 -13.79462 -13.54908 -13.51093 -13.31304 -13.07222 -13.03086 -12.83839 -12.74772 -12.45533 -12.26998 -12.24410 -12.07078 -12.04450 -11.94790 -11.76569 -11.69436 -11.45745 -11.41492 -11.37951 -11.25054 -11.14222 -11.01736 -10.55493 -10.35491 -9.56629 -8.93269 -7.98198 -5.25998 1.40048 1.43151 1.50164 1.77669 2.14126 2.53426 2.98469 3.34162 3.56804 3.71289 3.76227 3.82470 3.92795 3.99557 4.03242 4.04463 4.14362 4.20795 4.25651 4.28820 4.30572 4.34575 4.48368 4.51967 4.56730 4.59683 4.63900 4.67491 4.76325 4.77837 4.83725 4.85864 4.90420 4.91862 4.96325 4.97220 5.07887 5.09680 5.15627 5.19232 5.25178 5.28310 5.29455 5.34028 5.45008 5.45970 5.48329 5.50932 5.59869 5.77810 6.25913 6.28631 6.63971 7.31299 7.37246 8.05537 8.31284 9.24451 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.003005 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.509842 B = 9314.935825 C =11033.793872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.056 0.944 9 N -0.732 5.732 10 C 0.167 3.833 11 H 0.026 0.974 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.106 4.106 15 C -0.150 4.150 16 C 0.100 3.900 17 N -0.600 5.600 18 C 0.495 3.505 19 O -0.590 6.590 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.111 4.111 23 H 0.088 0.912 24 C -0.124 4.124 25 C -0.151 4.151 26 C 0.053 3.947 27 O -0.399 6.399 28 C 0.061 3.939 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.106 0.894 51 H 0.051 0.949 52 H 0.110 0.890 53 H 0.047 0.953 54 H 0.025 0.975 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.004 -25.379 -3.692 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.366 4.366 8 H 0.074 0.926 9 N -0.372 5.372 10 C 0.058 3.942 11 H 0.045 0.955 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.143 4.143 15 C -0.187 4.187 16 C -0.022 4.022 17 N -0.333 5.333 18 C 0.285 3.715 19 O -0.470 6.470 20 C -0.168 4.168 21 C -0.130 4.130 22 C -0.129 4.129 23 H 0.107 0.893 24 C -0.161 4.161 25 C -0.188 4.188 26 C -0.023 4.023 27 O -0.318 6.318 28 C -0.015 4.015 29 C -0.009 4.009 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.124 0.876 51 H 0.069 0.931 52 H 0.128 0.872 53 H 0.065 0.935 54 H 0.043 0.957 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.272 -24.873 -3.564 29.404 hybrid contribution -0.133 2.198 0.296 2.222 sum 15.138 -22.675 -3.268 27.459 Atomic orbital electron populations 1.69784 1.06117 1.26075 1.59611 1.25433 0.96416 1.00561 1.03834 0.85326 0.77381 0.79864 0.77915 1.20956 1.21155 1.20964 1.19398 0.90663 0.85606 1.40945 0.92578 1.42514 1.05338 1.00801 1.88564 1.20685 0.93969 0.85262 0.94333 0.95548 1.21998 0.98469 0.95214 1.00163 1.21614 0.98866 0.94921 0.99650 1.21711 1.02692 0.95947 0.93972 1.22323 0.96744 1.02912 0.96769 1.21973 0.97827 0.82746 0.99650 1.47980 1.10509 1.11566 1.63204 1.21523 0.83191 0.90384 0.76369 1.90748 1.79287 1.28040 1.48927 1.21814 0.93215 0.96309 1.05479 1.21225 0.93252 0.97308 1.01194 1.21724 0.95332 0.98033 0.97847 0.89347 1.21677 0.95014 0.98232 1.01226 1.22162 1.00075 0.98869 0.97726 1.22742 0.85722 1.00985 0.92885 1.87905 1.23151 1.38313 1.82472 1.22805 0.92396 0.90970 0.95358 1.21854 0.91689 0.88399 0.98961 0.93879 0.79251 0.90191 0.94102 0.92462 0.93489 0.91105 0.89771 0.91746 0.88079 0.90395 0.87043 0.86321 0.86263 0.93005 0.92900 0.92318 0.91550 0.90958 0.89713 0.87602 0.93098 0.87224 0.93498 0.95665 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.05 13.06 21.65 0.28 -60.76 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 49.75 29.55 68.60 2.03 51.78 16 4 H -0.28 -14.30 7.11 99.48 0.71 -13.60 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.23 -14.29 9.90 84.03 0.83 -13.46 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.73 -39.66 5.13 -323.52 -1.66 -41.32 16 10 C 0.17 7.20 2.38 44.87 0.11 7.31 16 11 H 0.03 1.33 6.13 -2.38 -0.01 1.32 16 12 C -0.12 -4.06 4.97 30.68 0.15 -3.91 16 13 C -0.11 -2.90 5.40 30.73 0.17 -2.73 16 14 C -0.11 -1.76 5.75 30.88 0.18 -1.58 16 15 C -0.15 -2.43 5.45 30.70 0.17 -2.26 16 16 C 0.10 1.63 5.89 86.74 0.51 2.14 16 17 N -0.60 -16.64 1.70 -824.97 -1.40 -18.03 16 18 C 0.50 15.13 6.16 87.66 0.54 15.67 16 19 O -0.59 -25.56 14.73 -3.01 -0.04 -25.60 16 20 C -0.13 -2.36 3.84 29.85 0.11 -2.24 16 21 C -0.09 -1.90 3.98 30.59 0.12 -1.78 16 22 C -0.11 -1.71 2.39 -10.70 -0.03 -1.73 16 23 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 24 C -0.12 -1.92 5.31 30.71 0.16 -1.76 16 25 C -0.15 -1.86 6.14 30.69 0.19 -1.67 16 26 C 0.05 0.69 6.84 72.01 0.49 1.18 16 27 O -0.40 -6.82 10.77 -148.98 -1.60 -8.43 16 28 C 0.06 0.90 5.82 72.01 0.42 1.32 16 29 C 0.12 4.37 4.72 85.90 0.41 4.78 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.38 21.11 7.80 -92.71 -0.72 20.39 16 32 H 0.08 2.41 5.47 -2.38 -0.01 2.40 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.36 5.38 -2.39 -0.01 1.34 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.01 7.87 -2.39 -0.02 1.00 16 38 H 0.06 1.41 3.35 -2.39 -0.01 1.40 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.13 5.76 -2.39 -0.01 1.12 16 42 H 0.12 1.49 6.57 -2.39 -0.02 1.48 16 43 H 0.12 1.55 7.51 -2.39 -0.02 1.54 16 44 H 0.05 1.27 8.10 -2.39 -0.02 1.26 16 45 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 46 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.11 1.24 6.69 -2.39 -0.02 1.23 16 53 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.02 1.17 8.05 -2.38 -0.02 1.15 16 55 H 0.09 3.00 6.06 -2.39 -0.01 2.98 16 Total: -1.00 -79.05 401.52 2.75 -76.29 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.15 Total: 30.60 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.00 Total: -4.53 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -2.77 Total: -120.11 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.65 Total: -34.03 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.03 Total: 51.78 kcal Total: -79.05 2.75 -76.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088407076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.313 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds