Wall clock time and date at job start Tue Mar 31 2020 20:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47093 * 270.00390 * 3 2 1 5 5 H 1.48502 * 109.46890 * 29.99853 * 3 2 1 6 6 H 1.48496 * 109.47059 * 150.00164 * 3 2 1 7 7 C 1.38814 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00169 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99915 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.47813 * 325.01963 * 10 9 7 12 12 C 1.52881 * 109.47653 * 205.00057 * 10 9 7 13 13 C 1.53969 * 109.71134 * 167.12353 * 12 10 9 14 14 C 1.52455 * 110.73349 * 315.64712 * 13 12 10 15 15 C 1.53795 * 109.41868 * 113.73123 * 14 13 12 16 16 C 1.52337 * 109.16450 * 282.12374 * 15 14 13 17 17 N 1.46962 * 109.08254 * 72.70765 * 16 15 14 18 18 C 1.34770 * 120.35571 * 68.38013 * 17 16 15 19 19 O 1.21280 * 119.99924 * 5.10914 * 18 17 16 20 20 C 1.50698 * 120.00228 * 185.10786 * 18 17 16 21 21 C 1.52993 * 109.47236 * 175.02282 * 20 18 17 22 22 C 1.53004 * 109.47347 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.52178 * 305.12928 * 22 21 20 24 24 C 1.53173 * 109.52514 * 184.99784 * 22 21 20 25 25 C 1.53178 * 109.03562 * 183.11695 * 24 22 21 26 26 C 1.53091 * 109.16692 * 56.98041 * 25 24 22 27 27 O 1.42907 * 109.41519 * 302.39377 * 26 25 24 28 28 C 1.42899 * 114.09698 * 61.15414 * 27 26 25 29 29 C 1.45342 * 119.28768 * 248.64954 * 17 16 15 30 30 H 0.96994 * 120.00328 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99936 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.43479 * 47.05016 * 12 10 9 33 33 H 1.08990 * 109.43312 * 287.19221 * 12 10 9 34 34 H 1.08999 * 109.22565 * 195.32604 * 13 12 10 35 35 H 1.09000 * 109.22526 * 75.96944 * 13 12 10 36 36 H 1.08999 * 109.47612 * 353.74378 * 14 13 12 37 37 H 1.08999 * 109.48693 * 233.71979 * 14 13 12 38 38 H 1.09002 * 109.51900 * 162.22306 * 15 14 13 39 39 H 1.08995 * 109.57819 * 42.06838 * 15 14 13 40 40 H 1.08997 * 109.53721 * 312.82482 * 16 15 14 41 41 H 1.08994 * 109.53561 * 192.58692 * 16 15 14 42 42 H 1.09005 * 109.46999 * 295.02260 * 20 18 17 43 43 H 1.08996 * 109.47366 * 55.01753 * 20 18 17 44 44 H 1.08996 * 109.47348 * 299.99875 * 21 20 18 45 45 H 1.09001 * 109.47365 * 59.99971 * 21 20 18 46 46 H 1.09000 * 109.54420 * 302.98177 * 24 22 21 47 47 H 1.08996 * 109.54172 * 63.25193 * 24 22 21 48 48 H 1.08996 * 109.52438 * 176.88855 * 25 24 22 49 49 H 1.09004 * 109.52597 * 297.00963 * 25 24 22 50 50 H 1.09000 * 109.47845 * 62.37558 * 26 25 24 51 51 H 1.08993 * 109.48520 * 182.39951 * 26 25 24 52 52 H 1.08998 * 109.48407 * 178.86019 * 28 27 26 53 53 H 1.08999 * 109.48049 * 58.82733 * 28 27 26 54 54 H 1.09007 * 109.67165 * 162.80874 * 29 17 16 55 55 H 1.08993 * 109.67658 * 283.34304 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9691 -3.5506 -0.5897 12 6 1.1817 -4.7514 -0.6097 13 6 2.0381 -5.9952 -0.9102 14 6 3.3551 -5.5977 -1.5673 15 6 4.5197 -5.9252 -0.6177 16 6 4.5990 -4.8554 0.4639 17 7 3.4795 -5.0338 1.3992 18 6 3.4340 -6.1095 2.2098 19 8 4.3635 -6.8881 2.2369 20 6 2.2282 -6.3450 3.0824 21 6 2.3748 -7.6862 3.8038 22 6 1.1508 -7.9251 4.6903 23 1 1.0192 -7.0792 5.3651 24 6 1.3522 -9.2051 5.5070 25 6 0.0898 -9.4756 6.3313 26 6 -1.1142 -9.5702 5.3905 27 8 -1.2259 -8.3598 4.6389 28 6 -0.0942 -8.0795 3.8127 29 6 2.4189 -4.0407 1.4364 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 0.7358 -4.3861 -1.5347 33 1 0.3918 -5.0164 0.0929 34 1 1.4882 -6.6564 -1.5799 35 1 2.2463 -6.5213 0.0214 36 1 3.3478 -4.5283 -1.7783 37 1 3.4786 -6.1510 -2.4983 38 1 5.4534 -5.9448 -1.1797 39 1 4.3519 -6.8982 -0.1561 40 1 4.5373 -3.8684 0.0056 41 1 5.5421 -4.9504 1.0020 42 1 2.1495 -5.5439 3.8174 43 1 1.3302 -6.3608 2.4648 44 1 2.4534 -8.4874 3.0689 45 1 3.2727 -7.6704 4.4214 46 1 1.5342 -10.0426 4.8335 47 1 2.2043 -9.0810 6.1752 48 1 0.2029 -10.4144 6.8735 49 1 -0.0638 -8.6619 7.0402 50 1 -0.9779 -10.4099 4.7090 51 1 -2.0217 -9.7202 5.9752 52 1 -0.2668 -7.1555 3.2609 53 1 0.0555 -8.8997 3.1106 54 1 1.5437 -4.4570 1.9353 55 1 2.7625 -3.1569 1.9737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088407078.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:06 Heat of formation + Delta-G solvation = -105.037230 kcal Electronic energy + Delta-G solvation = -31632.342263 eV Core-core repulsion = 27667.969822 eV Total energy + Delta-G solvation = -3964.372442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.61533 -40.35786 -38.94490 -36.36452 -35.95107 -35.19838 -34.02404 -33.55904 -31.82673 -30.58990 -28.52566 -27.41027 -26.18438 -25.95049 -25.33049 -23.69139 -22.82047 -22.22362 -21.00836 -20.76862 -19.55049 -19.16493 -18.08431 -17.41471 -17.13480 -17.12607 -16.81949 -16.45475 -15.96798 -15.71015 -15.51945 -15.27355 -15.07581 -15.01193 -14.81045 -14.53667 -14.34487 -14.12433 -13.76907 -13.58641 -13.53281 -13.23687 -13.11459 -12.98839 -12.83313 -12.64499 -12.55173 -12.26999 -12.21686 -12.15304 -12.05313 -11.89515 -11.76868 -11.72418 -11.49614 -11.44857 -11.42911 -11.17000 -11.13790 -10.96119 -10.58767 -10.35265 -9.50184 -8.94594 -7.91597 -5.19631 1.49415 1.50008 1.57684 1.68445 2.10648 2.58439 2.98809 3.41919 3.50601 3.71859 3.80322 3.80843 3.86153 3.97474 4.04579 4.05166 4.12392 4.21851 4.23995 4.27873 4.29982 4.32993 4.43839 4.53899 4.57134 4.58126 4.62388 4.63686 4.71284 4.77517 4.80279 4.84921 4.88410 4.90805 4.94867 4.98764 5.06454 5.09480 5.14464 5.16907 5.21319 5.24045 5.28039 5.34900 5.40107 5.43397 5.46199 5.52776 5.57837 5.72975 6.30094 6.30527 6.53508 7.23826 7.37710 8.12477 8.35335 9.31333 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.003047 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.934159 B = 9185.991970 C =10378.968700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.730 5.730 10 C 0.154 3.846 11 H 0.067 0.933 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.125 4.125 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.596 5.596 18 C 0.512 3.488 19 O -0.578 6.578 20 C -0.142 4.142 21 C -0.083 4.083 22 C -0.117 4.117 23 H 0.076 0.924 24 C -0.118 4.118 25 C -0.153 4.153 26 C 0.051 3.949 27 O -0.405 6.405 28 C 0.060 3.940 29 C 0.096 3.904 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.102 0.898 52 H 0.094 0.906 53 H 0.056 0.944 54 H 0.088 0.912 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -20.786 7.267 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.084 0.916 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.162 4.162 15 C -0.162 4.162 16 C -0.011 4.011 17 N -0.328 5.328 18 C 0.302 3.698 19 O -0.459 6.459 20 C -0.182 4.182 21 C -0.121 4.121 22 C -0.135 4.135 23 H 0.094 0.906 24 C -0.155 4.155 25 C -0.190 4.190 26 C -0.025 4.025 27 O -0.325 6.325 28 C -0.016 4.016 29 C -0.030 4.030 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.120 0.880 52 H 0.112 0.888 53 H 0.074 0.926 54 H 0.106 0.894 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.289 -20.926 7.282 22.400 hybrid contribution 0.145 1.356 -0.019 1.363 sum 3.434 -19.571 7.263 21.156 Atomic orbital electron populations 1.69791 1.06411 1.25867 1.59549 1.25430 0.96205 1.00654 1.04002 0.85298 0.77828 0.80334 0.77257 1.21729 1.22585 1.19587 1.19521 0.91251 0.85046 1.40690 0.90757 1.42566 1.05516 1.00623 1.88297 1.21025 0.95810 0.85235 0.93366 0.91583 1.21945 0.98000 0.95015 1.00500 1.21605 0.95723 0.96554 1.00517 1.21808 0.94212 1.01720 0.98440 1.21927 0.99390 0.98639 0.96294 1.21543 0.88937 0.99931 0.90694 1.47886 1.23684 1.23010 1.38173 1.21017 0.88896 0.79924 0.79933 1.90631 1.39629 1.46854 1.68762 1.21839 0.96378 1.00639 0.99314 1.21189 0.97474 0.95232 0.98206 1.21762 0.94704 0.99368 0.97706 0.90597 1.21640 0.98209 0.96876 0.98777 1.22175 0.94926 1.03305 0.98610 1.22770 0.99424 0.86408 0.93877 1.87929 1.41114 1.43160 1.60259 1.22783 0.85129 1.01614 0.92099 1.22302 0.89811 0.90417 1.00465 0.94146 0.79365 0.92870 0.91786 0.91435 0.92433 0.91890 0.90985 0.89956 0.92009 0.89946 0.91874 0.88176 0.87783 0.91675 0.91715 0.91366 0.91003 0.89199 0.91607 0.92537 0.87993 0.88784 0.92566 0.89370 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.73 13.06 21.65 0.28 -56.45 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.96 44.63 29.55 68.60 2.03 46.66 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.23 -12.05 9.88 84.03 0.83 -11.22 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -33.55 5.12 -323.05 -1.66 -35.20 16 10 C 0.15 5.36 2.29 44.97 0.10 5.46 16 11 H 0.07 2.36 3.29 -2.38 -0.01 2.35 16 12 C -0.12 -3.43 5.21 30.88 0.16 -3.27 16 13 C -0.11 -2.61 5.40 30.74 0.17 -2.44 16 14 C -0.12 -3.01 5.49 30.68 0.17 -2.84 16 15 C -0.12 -3.02 5.56 30.64 0.17 -2.85 16 16 C 0.11 3.05 5.18 86.07 0.45 3.49 16 17 N -0.60 -16.78 1.69 -824.74 -1.40 -18.18 16 18 C 0.51 14.23 6.06 87.66 0.53 14.76 16 19 O -0.58 -19.00 14.93 -3.03 -0.05 -19.04 16 20 C -0.14 -3.07 3.86 29.85 0.12 -2.95 16 21 C -0.08 -1.62 3.99 30.59 0.12 -1.50 16 22 C -0.12 -2.00 2.39 -10.70 -0.03 -2.03 16 23 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 24 C -0.12 -1.72 5.31 30.71 0.16 -1.55 16 25 C -0.15 -2.00 6.14 30.68 0.19 -1.82 16 26 C 0.05 0.77 6.84 72.01 0.49 1.26 16 27 O -0.41 -8.60 10.77 -148.98 -1.60 -10.20 16 28 C 0.06 1.11 5.83 72.02 0.42 1.53 16 29 C 0.10 2.99 5.50 86.61 0.48 3.47 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.37 18.71 7.80 -92.71 -0.72 17.98 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.44 5.38 -2.39 -0.01 1.43 16 36 H 0.06 1.74 5.47 -2.39 -0.01 1.73 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.67 6.37 -2.39 -0.02 1.65 16 40 H 0.08 2.36 6.07 -2.39 -0.01 2.34 16 41 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 42 H 0.10 2.07 8.12 -2.38 -0.02 2.05 16 43 H 0.10 2.03 5.95 -2.39 -0.01 2.02 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.09 1.73 6.70 -2.39 -0.02 1.71 16 53 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.09 2.48 5.66 -2.38 -0.01 2.47 16 55 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 Total: -1.00 -63.05 401.69 2.75 -60.30 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: 0.15 Total: 38.00 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.99 Total: -5.88 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -2.77 Total: -109.83 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.65 Total: -29.24 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.05 2.75 -60.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088407078.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.736 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds