Wall clock time and date at job start Tue Mar 31 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.25796 * 2 1 4 4 C 1.50821 * 109.42066 * 240.39500 * 2 1 3 5 5 C 1.52570 * 109.28072 * 331.73881 * 4 2 1 6 6 H 1.09003 * 108.51196 * 36.26146 * 5 4 2 7 7 N 1.46500 * 108.38528 * 153.84101 * 5 4 2 8 8 C 1.34781 * 119.99635 * 209.68530 * 7 5 4 9 9 O 1.21285 * 119.99697 * 0.02562 * 8 7 5 10 10 C 1.50692 * 119.99885 * 180.02562 * 8 7 5 11 11 C 1.53004 * 109.47127 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.48309 * 304.99882 * 11 10 8 13 13 C 1.53095 * 109.48040 * 184.97811 * 11 10 8 14 14 C 1.53179 * 109.16175 * 182.42002 * 13 11 10 15 15 C 1.53178 * 109.04522 * 56.96399 * 14 13 11 16 16 C 1.53093 * 109.16176 * 303.02747 * 15 14 13 17 17 O 1.42894 * 109.41700 * 57.61050 * 16 15 14 18 18 C 1.47088 * 114.32618 * 275.00554 * 5 4 2 19 19 C 1.54871 * 110.32432 * 62.80352 * 18 5 4 20 20 N 1.44572 * 109.59678 * 288.72869 * 19 18 5 21 21 C 1.36935 * 118.64447 * 270.70703 * 20 19 18 22 22 H 1.08002 * 119.99996 * 30.51755 * 21 20 19 23 23 C 1.38810 * 120.00012 * 210.52040 * 21 20 19 24 24 N 1.31617 * 120.00174 * 10.92056 * 23 21 20 25 25 Si 1.86803 * 120.00061 * 190.91700 * 23 21 20 26 26 H 1.48495 * 109.47186 * 59.99969 * 25 23 21 27 27 H 1.48507 * 109.47020 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47235 * 299.99813 * 25 23 21 29 29 C 1.47609 * 122.71359 * 90.72905 * 20 19 18 30 30 H 1.08993 * 109.47672 * 300.10006 * 1 2 3 31 31 H 1.09001 * 109.46950 * 60.10607 * 1 2 3 32 32 H 1.09004 * 109.46776 * 180.09440 * 1 2 3 33 33 H 1.09011 * 109.46833 * 179.67972 * 3 2 1 34 34 H 1.08996 * 109.47331 * 299.67637 * 3 2 1 35 35 H 1.08995 * 109.47278 * 59.68480 * 3 2 1 36 36 H 1.09005 * 109.51312 * 211.80498 * 4 2 1 37 37 H 1.08993 * 109.55532 * 91.70213 * 4 2 1 38 38 H 0.96991 * 120.00154 * 29.68769 * 7 5 4 39 39 H 1.08997 * 109.47411 * 300.00370 * 10 8 7 40 40 H 1.08998 * 109.47099 * 60.00272 * 10 8 7 41 41 H 1.09002 * 109.51959 * 302.31646 * 13 11 10 42 42 H 1.08997 * 109.52210 * 62.50224 * 13 11 10 43 43 H 1.08996 * 109.53393 * 297.09709 * 14 13 11 44 44 H 1.09004 * 109.61586 * 176.87822 * 14 13 11 45 45 H 1.08998 * 109.52583 * 183.11932 * 15 14 13 46 46 H 1.09003 * 109.57656 * 62.96183 * 15 14 13 47 47 H 1.08996 * 109.47988 * 297.62164 * 16 15 14 48 48 H 1.09005 * 109.47533 * 177.59349 * 16 15 14 49 49 H 1.09001 * 109.33207 * 302.54049 * 18 5 4 50 50 H 1.08997 * 109.18899 * 182.97206 * 18 5 4 51 51 H 1.08999 * 109.44731 * 168.69009 * 19 18 5 52 52 H 1.08996 * 109.44943 * 48.76916 * 19 18 5 53 53 H 0.96998 * 120.00587 * 180.02562 * 24 23 21 54 54 H 1.08992 * 108.94336 * 78.55344 * 29 20 19 55 55 H 1.08996 * 108.94403 * 197.27043 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0346 1.4444 0.0000 4 6 2.0314 -0.7027 -1.2367 5 6 1.0026 -1.7386 -1.6796 6 1 0.0061 -1.3396 -1.4904 7 7 1.1513 -1.9502 -3.1216 8 6 0.0833 -2.3022 -3.8647 9 8 -1.0008 -2.4433 -3.3395 10 6 0.2362 -2.5204 -5.3478 11 6 -1.1166 -2.9080 -5.9485 12 1 -1.5138 -3.7748 -5.4205 13 6 -0.9381 -3.2503 -7.4300 14 6 -2.3051 -3.5784 -8.0384 15 6 -3.2456 -2.3883 -7.8256 16 6 -3.3348 -2.0795 -6.3288 17 8 -2.0263 -1.8135 -5.8199 18 6 1.1215 -3.0387 -1.0021 19 6 0.8733 -2.8778 0.5181 20 7 1.9912 -2.1876 1.1216 21 6 3.0477 -2.9269 1.5824 22 1 3.3029 -3.8608 1.1038 23 6 3.7907 -2.4759 2.6648 24 7 3.3595 -1.4596 3.3813 25 14 5.4025 -3.3115 3.1044 26 1 6.3411 -3.2108 1.9581 27 1 5.9978 -2.6457 4.2909 28 1 5.1504 -4.7420 3.4134 29 6 2.0405 -0.7191 1.2618 30 1 -0.3634 0.5153 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 -0.3633 -1.0277 0.0017 33 1 3.1247 1.4484 0.0057 34 1 1.6741 1.9553 -0.8928 35 1 1.6648 1.9585 0.8871 36 1 2.9760 -1.1997 -1.0153 37 1 2.1815 0.0249 -2.0342 38 1 2.0182 -1.8370 -3.5416 39 1 0.5913 -1.6021 -5.8155 40 1 0.9554 -3.3200 -5.5252 41 1 -0.5029 -2.3975 -7.9510 42 1 -0.2792 -4.1130 -7.5277 43 1 -2.7184 -4.4614 -7.5510 44 1 -2.1942 -3.7693 -9.1058 45 1 -4.2367 -2.6345 -8.2065 46 1 -2.8582 -1.5175 -8.3547 47 1 -3.7611 -2.9355 -5.8059 48 1 -3.9691 -1.2065 -6.1750 49 1 2.1221 -3.4397 -1.1638 50 1 0.3855 -3.7275 -1.4168 51 1 0.7650 -3.8618 0.9743 52 1 -0.0381 -2.3017 0.6780 53 1 3.8788 -1.1442 4.1375 54 1 1.4245 -0.4239 2.1112 55 1 3.0705 -0.4160 1.4497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089356775.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:22 Heat of formation + Delta-G solvation = -85.545098 kcal Electronic energy + Delta-G solvation = -31667.734218 eV Core-core repulsion = 27704.207019 eV Total energy + Delta-G solvation = -3963.527199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50527 -40.46781 -39.40176 -36.32999 -35.74095 -34.47795 -33.98922 -33.54746 -31.75228 -29.42196 -28.58000 -28.20926 -27.34308 -25.81676 -25.28832 -24.02645 -23.06549 -21.39672 -21.15915 -21.12903 -19.41355 -18.51648 -17.94099 -17.48791 -17.32071 -16.95535 -16.71837 -16.00419 -15.81630 -15.72961 -15.40381 -15.29918 -15.18634 -14.83103 -14.56250 -14.21284 -14.14154 -13.88103 -13.82503 -13.52988 -13.37267 -13.15425 -13.03937 -12.95116 -12.84292 -12.79582 -12.60220 -12.29434 -12.14314 -12.12331 -12.01099 -11.93060 -11.77471 -11.62722 -11.60005 -11.49957 -11.22815 -11.08460 -10.76234 -10.64793 -10.43304 -10.25983 -9.89480 -8.55240 -7.81053 -5.32775 1.47641 1.48433 1.55389 1.84378 2.34111 2.53005 2.90177 3.32005 3.69611 3.74867 3.78742 3.82919 3.97347 4.01646 4.06138 4.14977 4.18126 4.24045 4.27676 4.37617 4.46222 4.49978 4.52239 4.64100 4.73405 4.74417 4.77112 4.80985 4.84151 4.85361 4.88345 4.92760 5.00846 5.01994 5.05177 5.10762 5.15388 5.16153 5.20901 5.22313 5.28559 5.30619 5.42199 5.43363 5.52941 5.57823 5.68415 5.70773 5.75871 5.89756 6.39708 6.46221 6.75888 7.23587 7.46518 7.98254 8.39487 9.22712 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.002580 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.768720 B =10849.922007 C =11479.700138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.089 4.089 5 C 0.148 3.852 6 H 0.083 0.917 7 N -0.722 5.722 8 C 0.506 3.494 9 O -0.578 6.578 10 C -0.129 4.129 11 C 0.102 3.898 12 H 0.042 0.958 13 C -0.144 4.144 14 C -0.124 4.124 15 C -0.151 4.151 16 C 0.055 3.945 17 O -0.395 6.395 18 C -0.132 4.132 19 C 0.150 3.850 20 N -0.598 5.598 21 C -0.264 4.264 22 H 0.060 0.940 23 C -0.044 4.044 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.279 1.279 29 C 0.207 3.793 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.409 0.591 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.093 0.907 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.032 0.968 52 H 0.048 0.952 53 H 0.248 0.752 54 H -0.009 1.009 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 0.393 -24.861 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.184 4.184 4 C -0.127 4.127 5 C 0.044 3.956 6 H 0.101 0.899 7 N -0.373 5.373 8 C 0.294 3.706 9 O -0.458 6.458 10 C -0.168 4.168 11 C 0.044 3.956 12 H 0.060 0.940 13 C -0.182 4.182 14 C -0.162 4.162 15 C -0.189 4.189 16 C -0.021 4.021 17 O -0.314 6.314 18 C -0.174 4.174 19 C 0.023 3.977 20 N -0.320 5.320 21 C -0.395 4.395 22 H 0.078 0.922 23 C -0.240 4.240 24 N -0.579 5.579 25 Si 0.792 3.208 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.205 1.205 29 C 0.082 3.918 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.245 0.755 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.111 0.889 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.051 0.949 52 H 0.066 0.934 53 H 0.057 0.943 54 H 0.009 0.991 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.818 0.557 -24.254 25.490 hybrid contribution 1.062 -0.682 0.880 1.538 sum -6.757 -0.125 -23.375 24.332 Atomic orbital electron populations 1.22267 0.95247 1.01761 1.00921 1.20803 0.95554 0.96148 0.96077 1.21758 1.00594 0.94189 1.01823 1.21150 0.98111 0.96803 0.96680 1.20021 1.01173 0.95063 0.79332 0.89882 1.46322 1.12159 1.70334 1.08497 1.21183 0.83544 0.75564 0.90328 1.90684 1.27890 1.52353 1.74846 1.21828 0.98402 1.06564 0.90025 1.21856 0.89031 0.89200 0.95541 0.93951 1.22198 0.98585 1.03286 0.94138 1.21617 0.94872 0.97697 1.01984 1.22169 1.01277 0.99388 0.96032 1.22637 0.84268 1.01299 0.93919 1.87937 1.22005 1.38739 1.82739 1.21590 1.00579 0.97307 0.97886 1.20893 0.90164 0.95429 0.91251 1.43754 1.17465 1.01765 1.69023 1.19389 1.06753 1.04786 1.08550 0.92229 1.25837 1.02806 0.99416 0.95897 1.70188 1.38941 1.29388 1.19380 0.85419 0.80341 0.78016 0.77073 1.20225 1.22159 1.20545 1.20808 0.98160 0.81450 0.91346 0.93553 0.92146 0.92098 0.93194 0.90960 0.93264 0.92653 0.90154 0.75517 0.86349 0.84649 0.90218 0.89059 0.92156 0.89749 0.89638 0.90960 0.94233 0.88868 0.93084 0.93212 0.94943 0.93446 0.94255 0.99141 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 6.75 71.98 0.49 -4.54 16 2 C -0.08 -3.04 0.74 -52.57 -0.04 -3.08 16 3 C -0.13 -3.92 8.15 71.98 0.59 -3.34 16 4 C -0.09 -2.93 4.38 29.74 0.13 -2.80 16 5 C 0.15 4.85 1.79 43.01 0.08 4.92 16 6 H 0.08 3.03 3.96 -2.39 -0.01 3.02 16 7 N -0.72 -18.62 4.88 -452.05 -2.21 -20.83 16 8 C 0.51 13.83 7.55 87.65 0.66 14.50 16 9 O -0.58 -21.32 14.91 10.69 0.16 -21.16 16 10 C -0.13 -2.25 5.41 29.85 0.16 -2.09 16 11 C 0.10 2.03 2.19 30.63 0.07 2.10 16 12 H 0.04 1.02 7.95 -2.39 -0.02 1.00 16 13 C -0.14 -1.84 5.42 30.69 0.17 -1.68 16 14 C -0.12 -1.50 6.03 30.71 0.19 -1.31 16 15 C -0.15 -2.02 6.14 30.68 0.19 -1.83 16 16 C 0.06 1.08 6.84 72.01 0.49 1.57 16 17 O -0.39 -9.89 9.64 -135.24 -1.30 -11.19 16 18 C -0.13 -4.94 5.20 29.40 0.15 -4.78 16 19 C 0.15 6.57 5.58 87.38 0.49 7.06 16 20 N -0.60 -29.77 2.26 -698.38 -1.58 -31.35 16 21 C -0.26 -14.42 9.41 84.03 0.79 -13.63 16 22 H 0.06 3.21 7.85 -2.91 -0.02 3.19 16 23 C -0.04 -2.44 4.97 84.86 0.42 -2.02 16 24 N -0.93 -54.98 11.00 21.65 0.24 -54.74 16 25 Si 0.96 44.84 29.57 68.60 2.03 46.87 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 29 C 0.21 9.91 3.53 86.49 0.31 10.22 16 30 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.06 1.87 7.91 -2.39 -0.02 1.85 16 32 H 0.06 2.28 3.14 -2.38 -0.01 2.28 16 33 H 0.05 1.57 8.13 -2.38 -0.02 1.55 16 34 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 2.09 7.48 -2.38 -0.02 2.07 16 37 H 0.08 2.18 7.63 -2.39 -0.02 2.16 16 38 H 0.41 7.92 8.61 -92.72 -0.80 7.12 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.14 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 51 H 0.03 1.47 7.99 -2.39 -0.02 1.45 16 52 H 0.05 2.05 5.22 -2.39 -0.01 2.03 16 53 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 54 H -0.01 -0.51 7.82 -2.39 -0.02 -0.53 16 55 H 0.04 2.22 6.32 -2.39 -0.02 2.20 16 Total: -1.00 -70.55 403.82 2.72 -67.82 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.06 Total: 25.31 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.32 Total: -0.73 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.55 Total: -106.92 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.14 Total: -32.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.55 2.72 -67.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089356775.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.722 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds