Wall clock time and date at job start Tue Mar 31 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.26016 * 2 1 4 4 C 1.50877 * 109.36938 * 119.68129 * 2 1 3 5 5 C 1.52561 * 109.36038 * 212.07990 * 4 2 1 6 6 H 1.08993 * 108.51464 * 36.08150 * 5 4 2 7 7 N 1.46505 * 108.51584 * 153.73378 * 5 4 2 8 8 C 1.34775 * 119.99811 * 205.00198 * 7 5 4 9 9 O 1.21280 * 120.00311 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99645 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.46994 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.48057 * 55.00181 * 11 10 8 13 13 C 1.53098 * 109.48281 * 175.02226 * 11 10 8 14 14 C 1.53177 * 109.16266 * 177.59404 * 13 11 10 15 15 C 1.53175 * 109.03620 * 303.01939 * 14 13 11 16 16 C 1.53096 * 109.16437 * 56.98219 * 15 14 13 17 17 O 1.42900 * 109.42521 * 302.39825 * 16 15 14 18 18 C 1.47096 * 114.32275 * 274.98048 * 5 4 2 19 19 C 1.54868 * 110.31820 * 62.80853 * 18 5 4 20 20 N 1.44574 * 109.59545 * 288.72728 * 19 18 5 21 21 C 1.36938 * 118.64651 * 270.72390 * 20 19 18 22 22 H 1.08003 * 119.99534 * 30.36173 * 21 20 19 23 23 C 1.38811 * 120.00295 * 210.35568 * 21 20 19 24 24 N 1.31620 * 120.00095 * 10.85583 * 23 21 20 25 25 Si 1.86793 * 120.00260 * 190.85296 * 23 21 20 26 26 H 1.48508 * 109.47326 * 59.99969 * 25 23 21 27 27 H 1.48499 * 109.47499 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.47186 * 300.00349 * 25 23 21 29 29 C 1.47611 * 122.71172 * 90.75551 * 20 19 18 30 30 H 1.09000 * 109.47138 * 300.31954 * 1 2 3 31 31 H 1.09004 * 109.47307 * 60.31768 * 1 2 3 32 32 H 1.09000 * 109.47344 * 180.31993 * 1 2 3 33 33 H 1.09008 * 109.46825 * 180.43150 * 3 2 1 34 34 H 1.09000 * 109.46960 * 300.42756 * 3 2 1 35 35 H 1.08990 * 109.47225 * 60.43273 * 3 2 1 36 36 H 1.08999 * 109.49362 * 92.10882 * 4 2 1 37 37 H 1.09009 * 109.48822 * 332.04340 * 4 2 1 38 38 H 0.97001 * 119.99707 * 24.98922 * 7 5 4 39 39 H 1.08996 * 109.47263 * 299.99770 * 10 8 7 40 40 H 1.09002 * 109.46990 * 59.99906 * 10 8 7 41 41 H 1.08997 * 109.51815 * 297.50526 * 13 11 10 42 42 H 1.08998 * 109.51796 * 57.68634 * 13 11 10 43 43 H 1.08992 * 109.54625 * 62.88780 * 14 13 11 44 44 H 1.08998 * 109.53721 * 183.06879 * 14 13 11 45 45 H 1.08997 * 109.52242 * 176.88749 * 15 14 13 46 46 H 1.09004 * 109.52354 * 297.01151 * 15 14 13 47 47 H 1.08997 * 109.47651 * 62.37589 * 16 15 14 48 48 H 1.08997 * 109.48022 * 182.39727 * 16 15 14 49 49 H 1.09004 * 109.32687 * 183.06255 * 18 5 4 50 50 H 1.08993 * 109.33013 * 302.71664 * 18 5 4 51 51 H 1.08991 * 109.45143 * 48.77089 * 19 18 5 52 52 H 1.09006 * 109.44740 * 168.69570 * 19 18 5 53 53 H 0.96997 * 120.00549 * 179.97438 * 24 23 21 54 54 H 1.08997 * 108.94634 * 78.52943 * 29 20 19 55 55 H 1.08996 * 108.94563 * 197.16042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0347 1.4444 0.0000 4 6 2.0304 -0.7048 1.2366 5 6 3.3486 -0.0767 1.6783 6 1 3.3027 0.9953 1.4863 7 7 3.5023 -0.2832 3.1205 8 6 4.2677 0.5578 3.8439 9 8 4.8296 1.4853 3.3009 10 6 4.4253 0.3456 5.3276 11 6 5.3379 1.4300 5.9037 12 1 4.9433 2.4126 5.6448 13 6 5.3990 1.2897 7.4271 14 6 6.3610 2.3401 7.9906 15 6 7.7340 2.1630 7.3349 16 6 7.5827 2.2696 5.8152 17 8 6.6516 1.2858 5.3601 18 6 4.5356 -0.6193 0.9998 19 6 4.4645 -0.3320 -0.5204 20 7 3.4427 -1.1586 -1.1227 21 6 3.7902 -2.4005 -1.5834 22 1 4.5891 -2.9492 -1.1068 23 6 3.1156 -2.9542 -2.6629 24 7 2.2952 -2.2127 -3.3768 25 14 3.3721 -4.7514 -3.1025 26 1 2.9722 -5.6039 -1.9541 27 1 2.5439 -5.0946 -4.2863 28 1 4.8047 -4.9846 -3.4168 29 6 2.0405 -0.7190 -1.2623 30 1 -0.3633 0.5188 0.8871 31 1 -0.3634 0.5089 -0.8928 32 1 -0.3634 -1.0276 0.0057 33 1 3.1247 1.4484 -0.0077 34 1 1.6632 1.9590 -0.8861 35 1 1.6758 1.9546 0.8937 36 1 2.1867 -1.7606 1.0154 37 1 1.2946 -0.6052 2.0348 38 1 3.0530 -1.0252 3.5547 39 1 3.4484 0.3994 5.8081 40 1 4.8663 -0.6344 5.5096 41 1 4.4050 1.4434 7.8471 42 1 5.7551 0.2929 7.6869 43 1 5.9794 3.3377 7.7737 44 1 6.4511 2.2106 9.0691 45 1 8.4099 2.9412 7.6892 46 1 8.1378 1.1842 7.5940 47 1 7.2177 3.2632 5.5551 48 1 8.5497 2.1020 5.3410 49 1 5.4311 -0.1551 1.4131 50 1 4.5813 -1.6965 1.1591 51 1 4.2224 0.7186 -0.6802 52 1 5.4284 -0.5556 -0.9775 53 1 1.8241 -2.5995 -4.1313 54 1 1.9654 -0.0400 -2.1116 55 1 1.4136 -1.5903 -1.4512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089356777.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:32 Heat of formation + Delta-G solvation = -85.685192 kcal Electronic energy + Delta-G solvation = -31688.400830 eV Core-core repulsion = 27724.867556 eV Total energy + Delta-G solvation = -3963.533274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50583 -40.46446 -39.40030 -36.33371 -35.72892 -34.48134 -33.99635 -33.54893 -31.75148 -29.41896 -28.57921 -28.20014 -27.34610 -25.80894 -25.29748 -24.02796 -23.06584 -21.43015 -21.15003 -21.09596 -19.41041 -18.52054 -17.93011 -17.44394 -17.37878 -16.97265 -16.71980 -16.00027 -15.90313 -15.59983 -15.36045 -15.29256 -15.24556 -14.87686 -14.54889 -14.20180 -14.11592 -13.88156 -13.84150 -13.51895 -13.35004 -13.22813 -12.99588 -12.92293 -12.85723 -12.79824 -12.60630 -12.29176 -12.14656 -12.12399 -12.01760 -11.93081 -11.76991 -11.62198 -11.59888 -11.49236 -11.22543 -11.08793 -10.78583 -10.63960 -10.43243 -10.25722 -9.88331 -8.55855 -7.81824 -5.33248 1.46943 1.47666 1.54785 1.84405 2.34733 2.52427 2.90937 3.31106 3.69334 3.75186 3.78936 3.83137 3.97398 4.01387 4.06582 4.14967 4.18076 4.23459 4.27783 4.38263 4.45874 4.50305 4.51936 4.64045 4.73431 4.74365 4.76704 4.81435 4.84993 4.85668 4.88390 4.92660 5.01060 5.02004 5.05788 5.11015 5.15801 5.16346 5.21099 5.22653 5.28972 5.31245 5.42472 5.43811 5.53907 5.57678 5.68338 5.70621 5.76319 5.90309 6.40715 6.45614 6.76364 7.23080 7.46953 7.97929 8.38509 9.21844 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002662 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.362798 B =10516.876981 C =11238.096957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.089 4.089 5 C 0.151 3.849 6 H 0.083 0.917 7 N -0.722 5.722 8 C 0.506 3.494 9 O -0.578 6.578 10 C -0.129 4.129 11 C 0.101 3.899 12 H 0.046 0.954 13 C -0.144 4.144 14 C -0.123 4.123 15 C -0.152 4.152 16 C 0.055 3.945 17 O -0.398 6.398 18 C -0.133 4.133 19 C 0.151 3.849 20 N -0.598 5.598 21 C -0.265 4.265 22 H 0.057 0.943 23 C -0.043 4.043 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.294 1.294 28 H -0.281 1.281 29 C 0.206 3.794 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.409 0.591 39 H 0.141 0.859 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.046 0.954 50 H 0.045 0.955 51 H 0.049 0.951 52 H 0.029 0.971 53 H 0.249 0.751 54 H -0.009 1.009 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 7.528 25.031 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.203 4.203 4 C -0.127 4.127 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.373 5.373 8 C 0.293 3.707 9 O -0.457 6.457 10 C -0.168 4.168 11 C 0.043 3.957 12 H 0.064 0.936 13 C -0.182 4.182 14 C -0.161 4.161 15 C -0.189 4.189 16 C -0.021 4.021 17 O -0.317 6.317 18 C -0.174 4.174 19 C 0.024 3.976 20 N -0.320 5.320 21 C -0.396 4.396 22 H 0.075 0.925 23 C -0.239 4.239 24 N -0.578 5.578 25 Si 0.791 3.209 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.207 1.207 29 C 0.081 3.919 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.159 0.841 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.047 0.953 53 H 0.058 0.942 54 H 0.009 0.991 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.447 8.023 24.365 25.692 hybrid contribution 0.172 -1.144 -0.855 1.438 sum 1.618 6.879 23.510 24.549 Atomic orbital electron populations 1.21749 0.93131 1.01489 1.01930 1.20819 0.96402 0.95431 0.95928 1.22273 1.01296 0.95564 1.01136 1.21148 0.94975 0.99714 0.96866 1.19990 0.94451 1.01547 0.79310 0.89882 1.46336 1.50614 1.31731 1.08666 1.21187 0.77495 0.81420 0.90567 1.90684 1.47743 1.33331 1.73933 1.21838 1.02798 1.01781 0.90414 1.21887 0.83064 0.97626 0.93114 0.93556 1.22202 1.01702 1.00690 0.93609 1.21611 0.94536 0.99008 1.00926 1.22170 0.98536 1.03255 0.94952 1.22629 0.93032 0.91434 0.95015 1.87954 1.20481 1.53368 1.69921 1.21583 0.97729 1.00122 0.97985 1.20877 0.91485 0.94066 0.91197 1.43757 1.04081 1.15111 1.69053 1.19377 1.17555 0.93836 1.08805 0.92484 1.25818 1.00275 1.01906 0.95868 1.70186 1.32387 1.35701 1.19555 0.85421 0.77377 0.80941 0.77122 1.20228 1.21986 1.20661 1.20834 0.83828 0.95730 0.91478 0.90668 0.93302 0.93262 0.92288 0.93530 0.91706 0.92876 0.89670 0.75503 0.84104 0.86928 0.88731 0.90520 0.91911 0.89743 0.89605 0.91201 0.93997 0.89201 0.93510 0.93572 0.93288 0.95262 0.94213 0.99135 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.14 71.98 0.59 -3.19 16 2 C -0.08 -2.98 0.75 -52.54 -0.04 -3.02 16 3 C -0.15 -4.89 6.76 71.98 0.49 -4.40 16 4 C -0.09 -2.87 4.36 29.76 0.13 -2.74 16 5 C 0.15 4.94 1.76 43.01 0.08 5.02 16 6 H 0.08 2.96 4.11 -2.39 -0.01 2.95 16 7 N -0.72 -18.63 4.95 -452.05 -2.24 -20.86 16 8 C 0.51 13.85 7.45 87.66 0.65 14.50 16 9 O -0.58 -21.34 14.59 10.72 0.16 -21.18 16 10 C -0.13 -2.26 5.41 29.85 0.16 -2.10 16 11 C 0.10 2.02 2.19 30.63 0.07 2.09 16 12 H 0.05 1.07 7.96 -2.38 -0.02 1.05 16 13 C -0.14 -1.83 5.42 30.69 0.17 -1.66 16 14 C -0.12 -1.48 6.03 30.71 0.19 -1.29 16 15 C -0.15 -2.12 6.14 30.68 0.19 -1.93 16 16 C 0.06 1.13 6.84 72.01 0.49 1.62 16 17 O -0.40 -10.41 9.64 -135.23 -1.30 -11.72 16 18 C -0.13 -5.17 5.16 29.40 0.15 -5.01 16 19 C 0.15 6.78 5.58 87.38 0.49 7.27 16 20 N -0.60 -30.12 2.26 -698.30 -1.58 -31.69 16 21 C -0.27 -14.69 9.41 84.03 0.79 -13.90 16 22 H 0.06 3.15 7.85 -2.91 -0.02 3.13 16 23 C -0.04 -2.41 4.97 84.86 0.42 -1.99 16 24 N -0.93 -55.11 10.98 21.65 0.24 -54.87 16 25 Si 0.96 45.27 29.57 68.60 2.03 47.30 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 C 0.21 9.85 3.53 86.50 0.31 10.15 16 30 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 31 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.06 2.18 3.15 -2.38 -0.01 2.17 16 34 H 0.05 1.55 8.13 -2.39 -0.02 1.54 16 35 H 0.06 1.87 7.90 -2.39 -0.02 1.85 16 36 H 0.05 2.01 7.48 -2.39 -0.02 1.99 16 37 H 0.08 2.18 7.64 -2.38 -0.02 2.16 16 38 H 0.41 7.87 8.56 -92.71 -0.79 7.07 16 39 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 1.88 7.45 -2.38 -0.02 1.86 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.05 2.14 5.22 -2.39 -0.01 2.13 16 52 H 0.03 1.37 7.99 -2.38 -0.02 1.35 16 53 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 54 H -0.01 -0.51 7.83 -2.39 -0.02 -0.53 16 55 H 0.04 2.23 6.30 -2.39 -0.02 2.22 16 Total: -1.00 -71.72 403.03 2.68 -69.04 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.07 Total: 24.58 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.31 Total: -0.58 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -3.58 Total: -107.43 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.15 Total: -32.90 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.72 2.68 -69.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089356777.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.650 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds