Wall clock time and date at job start Tue Mar 31 2020 22:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.24899 * 2 1 4 4 C 1.54840 * 109.36067 * 119.66098 * 2 1 3 5 5 C 1.50119 * 110.81901 * 81.33873 * 4 2 1 6 6 H 1.09000 * 110.24992 * 338.56776 * 5 4 2 7 7 N 1.46503 * 110.25299 * 216.66060 * 5 4 2 8 8 C 1.34769 * 120.00541 * 154.99631 * 7 5 4 9 9 O 1.21280 * 119.99975 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00073 * 179.97438 * 8 7 5 11 11 H 1.09000 * 108.78709 * 298.40754 * 10 8 7 12 12 C 1.54154 * 108.81703 * 179.97438 * 10 8 7 13 13 C 1.53461 * 111.66054 * 197.52836 * 12 10 8 14 14 C 1.51069 * 111.29656 * 319.24029 * 13 12 10 15 15 O 1.43400 * 107.46674 * 94.48449 * 14 13 12 16 16 C 1.36322 * 118.02971 * 276.36015 * 15 14 13 17 17 C 1.50978 * 108.81531 * 56.71414 * 10 8 7 18 18 C 1.52520 * 105.41959 * 97.68230 * 5 4 2 19 19 C 1.46240 * 114.27732 * 270.59645 * 18 5 4 20 20 N 1.50164 * 107.53389 * 58.40529 * 19 18 5 21 21 C 1.36941 * 120.53574 * 109.60987 * 20 19 18 22 22 H 1.08004 * 119.99666 * 156.65757 * 21 20 19 23 23 C 1.38816 * 119.99938 * 336.65527 * 21 20 19 24 24 N 1.31615 * 120.00035 * 340.43452 * 23 21 20 25 25 Si 1.86799 * 119.99765 * 160.43792 * 23 21 20 26 26 H 1.48507 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47369 * 119.99875 * 25 23 21 28 28 H 1.48506 * 109.46740 * 240.00060 * 25 23 21 29 29 C 1.43430 * 118.92970 * 289.59155 * 20 19 18 30 30 H 1.09003 * 109.46621 * 300.34203 * 1 2 3 31 31 H 1.09000 * 109.47348 * 60.33859 * 1 2 3 32 32 H 1.08997 * 109.47287 * 180.34074 * 1 2 3 33 33 H 1.08999 * 109.46748 * 179.66031 * 3 2 1 34 34 H 1.08998 * 109.46680 * 299.65871 * 3 2 1 35 35 H 1.08994 * 109.46581 * 59.65809 * 3 2 1 36 36 H 1.09002 * 109.20889 * 320.98803 * 4 2 1 37 37 H 1.09007 * 109.20781 * 201.67971 * 4 2 1 38 38 H 0.97003 * 119.99020 * 334.99668 * 7 5 4 39 39 H 1.09001 * 109.04157 * 76.96467 * 12 10 8 40 40 H 1.09006 * 109.04003 * 318.09139 * 12 10 8 41 41 H 1.09006 * 109.11458 * 198.77327 * 13 12 10 42 42 H 1.09000 * 109.06550 * 79.67896 * 13 12 10 43 43 H 1.08996 * 109.86048 * 334.99666 * 14 13 12 44 44 H 1.09000 * 109.86473 * 213.97127 * 14 13 12 45 45 H 1.09002 * 109.15446 * 182.29052 * 16 15 14 46 46 H 1.08999 * 109.16081 * 301.45772 * 16 15 14 47 47 H 1.09001 * 109.51210 * 93.26567 * 17 10 8 48 48 H 1.08998 * 109.51195 * 333.10711 * 17 10 8 49 49 H 1.09007 * 108.51975 * 31.83614 * 18 5 4 50 50 H 1.09001 * 108.52389 * 149.35009 * 18 5 4 51 51 H 1.08995 * 109.84347 * 298.89757 * 19 18 5 52 52 H 1.09001 * 109.84474 * 177.91348 * 19 18 5 53 53 H 0.96998 * 120.00047 * 180.02562 * 24 23 21 54 54 H 1.09010 * 108.15522 * 329.84923 * 29 20 19 55 55 H 1.08997 * 108.00299 * 213.16155 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4446 0.0000 4 6 2.0433 -0.7229 1.2694 5 6 2.0208 -2.2121 1.0812 6 1 1.3236 -2.4816 0.2879 7 7 1.6451 -2.8757 2.3322 8 6 1.0803 -4.0990 2.3029 9 8 0.8825 -4.6503 1.2409 10 6 0.6944 -4.7818 3.5897 11 1 1.5922 -4.9356 4.1884 12 6 0.0760 -6.1544 3.2582 13 6 -0.7224 -6.7167 4.4420 14 6 -0.0110 -6.4680 5.7513 15 8 -0.5383 -5.2543 6.3039 16 6 -0.0151 -4.0726 5.8703 17 6 -0.2494 -3.8841 4.3532 18 6 3.4446 -2.5928 0.6886 19 6 3.6998 -2.5624 -0.7510 20 7 3.4055 -1.1711 -1.2334 21 6 4.4211 -0.3436 -1.6322 22 1 4.2178 0.4733 -2.3089 23 6 5.7118 -0.5547 -1.1668 24 7 5.9106 -1.2695 -0.0797 25 14 7.1662 0.1759 -2.0834 26 1 6.6779 0.9310 -3.2653 27 1 7.9094 1.0927 -1.1821 28 1 8.0676 -0.9158 -2.5318 29 6 2.0435 -0.7231 -1.2700 30 1 -0.3633 0.5192 0.8870 31 1 -0.3634 0.5086 -0.8930 32 1 -0.3634 -1.0276 0.0061 33 1 3.1244 1.4487 0.0061 34 1 1.6741 1.9551 -0.8930 35 1 1.6640 1.9586 0.8869 36 1 1.4076 -0.4585 2.1145 37 1 3.0647 -0.4030 1.4761 38 1 1.8030 -2.4345 3.1815 39 1 0.8741 -6.8520 3.0042 40 1 -0.5877 -6.0476 2.4002 41 1 -0.8545 -7.7901 4.3058 42 1 -1.7011 -6.2377 4.4709 43 1 1.0595 -6.3607 5.5765 44 1 -0.1941 -7.2965 6.4355 45 1 -0.4885 -3.2524 6.4099 46 1 1.0562 -4.0604 6.0713 47 1 -1.2788 -4.1457 4.1081 48 1 -0.0626 -2.8450 4.0824 49 1 4.1343 -1.9044 1.1772 50 1 3.6476 -3.5990 1.0552 51 1 3.0488 -3.2750 -1.2573 52 1 4.7433 -2.8091 -0.9471 53 1 6.8125 -1.4167 0.2457 54 1 1.4058 -1.5889 -1.4492 55 1 1.9350 -0.0434 -2.1152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089370546.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:26 Heat of formation + Delta-G solvation = -85.741996 kcal Electronic energy + Delta-G solvation = -32318.866983 eV Core-core repulsion = 28355.331245 eV Total energy + Delta-G solvation = -3963.535738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.66482 -40.52997 -39.48755 -36.28541 -35.98736 -35.63994 -33.73495 -33.05797 -32.06605 -29.19240 -28.05190 -27.98299 -27.32160 -26.82402 -25.10357 -23.54554 -22.96004 -22.17417 -21.53198 -20.36950 -19.45072 -18.60215 -18.33890 -17.47541 -17.27118 -16.90655 -16.74752 -16.47107 -15.96243 -15.79373 -15.43710 -15.36028 -15.24634 -14.94708 -14.64213 -14.21617 -14.12323 -13.87221 -13.54246 -13.36750 -13.28658 -13.19371 -13.05310 -12.88956 -12.81797 -12.69227 -12.51992 -12.34776 -12.27252 -11.94344 -11.89988 -11.81766 -11.67553 -11.62310 -11.48855 -11.41613 -11.33355 -11.13720 -11.00813 -10.71210 -10.49198 -10.30955 -9.86871 -8.63413 -7.79921 -5.19336 1.45959 1.50884 1.58296 1.67505 2.22212 2.55348 2.96436 3.33222 3.55492 3.60394 3.71363 3.82747 3.98051 4.01039 4.05617 4.07948 4.12386 4.22742 4.42951 4.46673 4.47639 4.54345 4.56591 4.63158 4.67000 4.73414 4.78219 4.78575 4.88200 4.90891 4.93501 4.97174 5.05262 5.07116 5.11346 5.14766 5.18945 5.20414 5.25408 5.29043 5.31953 5.35398 5.38870 5.46509 5.52994 5.63674 5.68482 5.74751 5.80351 6.06893 6.43950 6.63962 6.70618 7.18741 7.32875 7.91794 8.44619 9.24953 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003055 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.203236 B = 9161.804686 C = 9812.578481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.090 4.090 5 C 0.162 3.838 6 H 0.066 0.934 7 N -0.710 5.710 8 C 0.509 3.491 9 O -0.586 6.586 10 C -0.099 4.099 11 H 0.106 0.894 12 C -0.101 4.101 13 C -0.143 4.143 14 C 0.062 3.938 15 O -0.397 6.397 16 C 0.077 3.923 17 C -0.153 4.153 18 C -0.116 4.116 19 C 0.174 3.826 20 N -0.595 5.595 21 C -0.245 4.245 22 H 0.062 0.938 23 C -0.041 4.041 24 N -0.916 5.916 25 Si 0.951 3.049 26 H -0.274 1.274 27 H -0.294 1.294 28 H -0.297 1.297 29 C 0.163 3.837 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.409 0.591 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.015 0.985 51 H 0.002 0.998 52 H 0.059 0.941 53 H 0.245 0.755 54 H 0.025 0.975 55 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 -4.853 14.143 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.128 4.128 5 C 0.057 3.943 6 H 0.084 0.916 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.466 6.466 10 C -0.120 4.120 11 H 0.124 0.876 12 C -0.140 4.140 13 C -0.181 4.181 14 C -0.014 4.014 15 O -0.316 6.316 16 C -0.001 4.001 17 C -0.191 4.191 18 C -0.155 4.155 19 C 0.050 3.950 20 N -0.317 5.317 21 C -0.375 4.375 22 H 0.080 0.920 23 C -0.237 4.237 24 N -0.562 5.562 25 Si 0.782 3.218 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.225 1.225 29 C 0.035 3.965 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.034 0.966 51 H 0.021 0.979 52 H 0.078 0.922 53 H 0.055 0.945 54 H 0.043 0.957 55 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.682 -5.271 13.543 19.960 hybrid contribution 1.744 0.443 -0.824 1.979 sum -11.939 -4.828 12.719 18.100 Atomic orbital electron populations 1.21751 0.93455 1.00975 1.02221 1.21834 0.95256 0.95731 0.96060 1.21647 1.00370 0.94980 1.00817 1.21616 1.00962 0.92434 0.97815 1.20060 0.95378 0.92859 0.85953 0.91597 1.46116 1.61691 1.18389 1.09842 1.21294 0.76116 0.81128 0.91797 1.90671 1.56268 1.65435 1.34236 1.21332 1.01433 0.96224 0.93044 0.87578 1.21687 0.99832 0.93838 0.98601 1.21945 0.99788 1.02303 0.94044 1.22643 0.97556 0.86564 0.94590 1.86337 1.64496 1.13919 1.66827 1.21886 0.98826 0.87247 0.92094 1.22373 0.99756 0.99680 0.97262 1.21102 0.96309 0.99096 0.99030 1.19902 0.98597 0.84043 0.92471 1.44283 1.01968 1.09755 1.75652 1.19322 0.88109 1.10140 1.19917 0.92010 1.25426 0.99940 1.01309 0.96988 1.70102 1.19751 1.44954 1.21417 0.85452 0.80557 0.77296 0.78540 1.19925 1.22158 1.22452 1.20615 0.85252 0.95640 0.94967 0.91379 0.92266 0.93905 0.94631 0.93109 0.92294 0.90873 0.93223 0.75409 0.92150 0.92725 0.89474 0.91035 0.92095 0.87166 0.87186 0.93359 0.90677 0.89679 0.90209 0.96612 0.97940 0.92220 0.94522 0.95667 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.20 71.98 0.59 -2.86 16 2 C -0.09 -2.90 0.76 -50.90 -0.04 -2.94 16 3 C -0.12 -4.07 8.29 71.99 0.60 -3.47 16 4 C -0.09 -3.08 4.15 30.29 0.13 -2.95 16 5 C 0.16 5.90 2.16 43.90 0.09 5.99 16 6 H 0.07 2.72 5.16 -2.39 -0.01 2.70 16 7 N -0.71 -20.46 4.53 -447.74 -2.03 -22.49 16 8 C 0.51 15.36 7.08 87.66 0.62 15.99 16 9 O -0.59 -23.33 15.22 -3.03 -0.05 -23.37 16 10 C -0.10 -2.07 2.03 -11.81 -0.02 -2.09 16 11 H 0.11 1.92 6.59 -2.39 -0.02 1.90 16 12 C -0.10 -2.15 4.85 31.14 0.15 -2.00 16 13 C -0.14 -2.19 5.43 30.12 0.16 -2.02 16 14 C 0.06 0.83 6.48 71.35 0.46 1.29 16 15 O -0.40 -6.49 9.91 -97.24 -0.96 -7.45 16 16 C 0.08 1.05 6.39 72.55 0.46 1.52 16 17 C -0.15 -2.50 5.10 30.50 0.16 -2.34 16 18 C -0.12 -5.13 4.74 28.35 0.13 -4.99 16 19 C 0.17 8.63 5.25 83.58 0.44 9.06 16 20 N -0.60 -29.11 2.60 -707.83 -1.84 -30.95 16 21 C -0.24 -12.96 8.98 84.03 0.75 -12.20 16 22 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 23 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 24 N -0.92 -50.54 9.43 21.65 0.20 -50.33 16 25 Si 0.95 44.30 29.60 68.60 2.03 46.33 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 29 C 0.16 6.78 4.01 87.60 0.35 7.13 16 30 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.22 7.57 -2.39 -0.02 1.20 16 33 H 0.03 1.45 7.48 -2.39 -0.02 1.43 16 34 H 0.05 1.60 8.12 -2.39 -0.02 1.58 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.01 7.68 -2.39 -0.02 2.00 16 37 H 0.05 2.05 6.65 -2.38 -0.02 2.03 16 38 H 0.41 9.13 7.78 -92.71 -0.72 8.41 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.42 7.37 -2.38 -0.02 1.40 16 41 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.07 1.18 7.31 -2.39 -0.02 1.16 16 43 H 0.06 0.78 6.67 -2.39 -0.02 0.77 16 44 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.05 0.59 7.68 -2.39 -0.02 0.57 16 47 H 0.07 1.35 7.16 -2.39 -0.02 1.33 16 48 H 0.08 1.30 6.74 -2.39 -0.02 1.28 16 49 H 0.08 3.95 5.29 -2.38 -0.01 3.93 16 50 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 51 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 52 H 0.06 3.31 6.05 -2.39 -0.01 3.30 16 53 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 54 H 0.03 1.05 6.69 -2.38 -0.02 1.03 16 55 H 0.03 1.21 7.81 -2.39 -0.02 1.19 16 Total: -1.00 -64.81 396.52 2.96 -61.84 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.15 Total: 25.09 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.46 Total: 1.34 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.66 Total: -103.77 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.01 Total: -30.82 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.81 2.96 -61.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089370546.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.901 kcal (2) G-P(sol) polarization free energy of solvation -64.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds