Wall clock time and date at job start Tue Mar 31 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.35528 * 2 1 4 4 C 1.54836 * 109.35749 * 240.40929 * 2 1 3 5 5 C 1.50132 * 110.80938 * 200.92375 * 4 2 1 6 6 H 1.09002 * 110.24719 * 338.72060 * 5 4 2 7 7 N 1.46501 * 110.25179 * 216.65797 * 5 4 2 8 8 C 1.34777 * 119.99915 * 155.00116 * 7 5 4 9 9 O 1.21283 * 119.99683 * 0.02562 * 8 7 5 10 10 C 1.50690 * 119.99892 * 180.02562 * 8 7 5 11 11 H 1.09000 * 108.94834 * 61.23949 * 10 8 7 12 12 C 1.46291 * 108.96359 * 180.02562 * 10 8 7 13 13 C 1.54199 * 112.07544 * 181.56313 * 12 10 8 14 14 C 1.50413 * 108.76656 * 282.18260 * 13 12 10 15 15 O 1.44187 * 112.77115 * 92.58268 * 14 13 12 16 16 C 1.44189 * 116.92949 * 318.47661 * 15 14 13 17 17 C 1.50423 * 112.77593 * 318.47461 * 16 15 14 18 18 C 1.52525 * 105.40358 * 97.68745 * 5 4 2 19 19 C 1.46245 * 114.28239 * 270.58332 * 18 5 4 20 20 N 1.49970 * 107.37550 * 58.42344 * 19 18 5 21 21 C 1.36940 * 120.40701 * 109.64509 * 20 19 18 22 22 H 1.07999 * 120.00187 * 210.90913 * 21 20 19 23 23 C 1.38810 * 119.99768 * 30.91044 * 21 20 19 24 24 N 1.31627 * 119.99982 * 19.90337 * 23 21 20 25 25 Si 1.86797 * 120.00207 * 199.89636 * 23 21 20 26 26 H 1.48503 * 109.46922 * 94.74583 * 25 23 21 27 27 H 1.48501 * 109.47600 * 214.74347 * 25 23 21 28 28 H 1.48502 * 109.47169 * 334.74897 * 25 23 21 29 29 C 1.43430 * 119.05523 * 289.33739 * 20 19 18 30 30 H 1.09003 * 109.46925 * 300.27374 * 1 2 3 31 31 H 1.08999 * 109.47102 * 60.27558 * 1 2 3 32 32 H 1.09005 * 109.46786 * 180.27399 * 1 2 3 33 33 H 1.09005 * 109.47259 * 179.72147 * 3 2 1 34 34 H 1.08997 * 109.47158 * 299.72452 * 3 2 1 35 35 H 1.09001 * 109.47092 * 59.72942 * 3 2 1 36 36 H 1.08998 * 109.21203 * 321.27207 * 4 2 1 37 37 H 1.08996 * 109.20684 * 80.63417 * 4 2 1 38 38 H 0.96998 * 119.99767 * 335.00413 * 7 5 4 39 39 H 1.09005 * 108.95377 * 302.22912 * 12 10 8 40 40 H 1.08997 * 108.96172 * 60.97864 * 12 10 8 41 41 H 1.08995 * 109.59109 * 41.96943 * 13 12 10 42 42 H 1.09005 * 109.58697 * 162.26000 * 13 12 10 43 43 H 1.08997 * 108.82543 * 213.42748 * 14 13 12 44 44 H 1.08996 * 108.82683 * 331.73492 * 14 13 12 45 45 H 1.08999 * 108.82192 * 79.32373 * 16 15 14 46 46 H 1.09001 * 108.82573 * 197.62984 * 16 15 14 47 47 H 1.08996 * 109.58914 * 332.78922 * 17 16 15 48 48 H 1.08993 * 109.58613 * 212.36174 * 17 16 15 49 49 H 1.08997 * 108.52573 * 31.82718 * 18 5 4 50 50 H 1.09002 * 108.51975 * 149.49973 * 18 5 4 51 51 H 1.09001 * 109.84532 * 177.92075 * 19 18 5 52 52 H 1.08997 * 109.84649 * 298.91124 * 19 18 5 53 53 H 0.97004 * 119.99627 * 179.97438 * 24 23 21 54 54 H 1.09000 * 108.16150 * 330.16025 * 29 20 19 55 55 H 1.09006 * 108.15668 * 213.38453 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0371 1.4435 0.0000 4 6 2.0433 -0.7214 -1.2703 5 6 3.4568 -1.1911 -1.0826 6 1 3.9401 -0.6244 -0.2867 7 7 4.2072 -1.0537 -2.3333 8 6 5.5483 -0.9236 -2.3037 9 8 6.1340 -0.9208 -1.2416 10 6 6.3201 -0.7817 -3.5902 11 1 5.9900 0.1215 -4.1032 12 6 7.7443 -0.6586 -3.2791 13 6 8.6004 -0.4702 -4.5476 14 6 8.7640 -1.8039 -5.2235 15 8 7.7574 -2.0486 -6.2264 16 6 6.4063 -1.6623 -5.9033 17 6 6.0265 -2.0008 -4.4877 18 6 3.3466 -2.6613 -0.6918 19 6 3.2338 -2.8942 0.7476 20 7 2.0181 -2.1581 1.2265 21 6 0.9026 -2.8463 1.6231 22 1 -0.0765 -2.4103 1.4905 23 6 1.0304 -4.1044 2.1955 24 7 2.1808 -4.4773 2.7152 25 14 -0.4303 -5.2683 2.2284 26 1 -0.3646 -6.1784 1.0568 27 1 -0.3978 -6.0684 3.4791 28 1 -1.6899 -4.4835 2.1754 29 6 2.0435 -0.7247 1.2691 30 1 -0.3633 0.5181 0.8875 31 1 -0.3633 0.5095 -0.8924 32 1 -0.3633 -1.0277 0.0049 33 1 3.1272 1.4458 0.0050 34 1 1.6768 1.9552 -0.8924 35 1 1.6688 1.9580 0.8876 36 1 1.4046 -1.5798 -1.4780 37 1 2.0041 -0.0327 -2.1142 38 1 3.7388 -1.0563 -3.1827 39 1 7.8904 0.1992 -2.6225 40 1 8.0731 -1.5601 -2.7621 41 1 8.1026 0.2239 -5.2247 42 1 9.5784 -0.0749 -4.2731 43 1 9.7462 -1.8413 -5.6947 44 1 8.7078 -2.5894 -4.4699 45 1 6.3041 -0.5867 -6.0472 46 1 5.7228 -2.1723 -6.5822 47 1 6.6115 -2.8550 -4.1467 48 1 4.9644 -2.2410 -4.4419 49 1 2.4694 -3.0848 -1.1808 50 1 4.2310 -3.1837 -1.0565 51 1 3.1227 -3.9609 0.9423 52 1 4.1212 -2.5151 1.2545 53 1 2.2699 -5.3564 3.1155 54 1 3.0710 -0.4083 1.4487 55 1 1.4375 -0.3992 2.1148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089370548.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:31 Heat of formation + Delta-G solvation = -91.965169 kcal Electronic energy + Delta-G solvation = -32047.872628 eV Core-core repulsion = 28084.067033 eV Total energy + Delta-G solvation = -3963.805595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.72322 -40.42298 -39.24772 -36.33075 -36.02283 -35.64251 -33.78094 -33.18677 -32.06321 -29.28771 -28.55903 -28.14246 -27.36923 -26.57353 -25.19064 -23.69238 -22.56523 -21.71384 -21.38281 -21.04532 -19.58725 -18.52560 -18.37349 -17.69149 -17.43017 -16.79266 -16.71134 -16.44881 -16.11785 -15.55831 -15.38921 -15.22732 -15.03171 -14.87156 -14.59688 -14.44481 -14.19011 -13.94401 -13.80878 -13.49111 -13.33094 -13.19625 -13.10495 -13.00960 -12.81342 -12.48443 -12.43598 -12.43119 -12.35097 -12.23300 -12.05983 -11.88147 -11.81940 -11.76347 -11.59804 -11.39507 -11.33716 -11.18446 -11.14794 -10.63921 -10.47867 -10.42390 -9.96902 -8.59489 -7.84230 -5.32592 1.46038 1.47880 1.56615 1.64300 2.19418 2.52349 2.89894 3.25259 3.53831 3.60534 3.62733 3.72559 3.87521 3.95104 3.99958 4.03551 4.07991 4.27636 4.34594 4.38721 4.40984 4.48204 4.50202 4.60303 4.70145 4.70456 4.70834 4.80616 4.82827 4.88609 4.92175 4.93414 4.97315 5.06337 5.08887 5.11158 5.14275 5.16634 5.21298 5.22305 5.25858 5.28542 5.35603 5.40284 5.49639 5.55890 5.64021 5.68293 5.72427 5.79908 6.32449 6.46557 6.63005 7.13435 7.33412 7.87959 8.43984 9.20842 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.003031 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.373262 B = 9236.389460 C =10081.382295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.094 4.094 5 C 0.162 3.838 6 H 0.065 0.935 7 N -0.707 5.707 8 C 0.508 3.492 9 O -0.587 6.587 10 C -0.093 4.093 11 H 0.126 0.874 12 C -0.109 4.109 13 C -0.140 4.140 14 C 0.058 3.942 15 O -0.414 6.414 16 C 0.064 3.936 17 C -0.142 4.142 18 C -0.124 4.124 19 C 0.162 3.838 20 N -0.592 5.592 21 C -0.247 4.247 22 H 0.071 0.929 23 C -0.051 4.051 24 N -0.932 5.932 25 Si 0.959 3.041 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.266 1.266 29 C 0.165 3.835 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.035 0.965 51 H 0.068 0.932 52 H -0.006 1.006 53 H 0.247 0.753 54 H 0.012 0.988 55 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 11.344 -20.476 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.185 4.185 4 C -0.132 4.132 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.358 5.358 8 C 0.295 3.705 9 O -0.467 6.467 10 C -0.114 4.114 11 H 0.143 0.857 12 C -0.147 4.147 13 C -0.178 4.178 14 C -0.018 4.018 15 O -0.335 6.335 16 C -0.012 4.012 17 C -0.180 4.180 18 C -0.164 4.164 19 C 0.037 3.963 20 N -0.313 5.313 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.247 4.247 24 N -0.578 5.578 25 Si 0.788 3.212 26 H -0.214 1.214 27 H -0.227 1.227 28 H -0.190 1.190 29 C 0.037 3.963 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.054 0.946 51 H 0.086 0.914 52 H 0.012 0.988 53 H 0.057 0.943 54 H 0.031 0.969 55 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.876 11.123 -19.787 23.718 hybrid contribution -0.671 -1.139 1.027 1.674 sum 6.205 9.984 -18.760 22.139 Atomic orbital electron populations 1.21729 0.94135 1.01099 1.01300 1.21800 0.96137 0.95147 0.95474 1.21757 0.99981 0.94449 1.02346 1.21685 0.93236 1.00434 0.97860 1.19997 0.92777 0.95219 0.86296 0.91727 1.46061 1.06632 1.73412 1.09740 1.21358 0.82658 0.74762 0.91700 1.90718 1.69889 1.51759 1.34344 1.20489 0.96061 1.02019 0.92785 0.85658 1.20474 0.93556 1.02498 0.98192 1.21862 1.01642 0.98172 0.96111 1.22409 0.91732 0.96113 0.91518 1.88232 1.17234 1.85117 1.42876 1.22410 0.82870 1.01128 0.94791 1.21986 1.03813 0.96588 0.95595 1.21223 0.99867 0.96857 0.98440 1.19968 0.86708 0.98615 0.90968 1.44007 1.12732 1.00288 1.74284 1.19448 0.86848 0.99539 1.31888 0.91146 1.25776 0.98921 1.01821 0.98150 1.70199 1.26630 1.20123 1.40879 0.85371 0.80204 0.79247 0.76395 1.21419 1.22724 1.18996 1.20557 0.96570 0.84228 0.94987 0.93450 0.91333 0.94078 0.94073 0.90651 0.92738 0.92053 0.89681 0.74870 0.91956 0.93278 0.89466 0.88817 0.88248 0.94121 0.91129 0.87776 0.91786 0.88525 0.92290 0.94626 0.91355 0.98756 0.94345 0.96945 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.28 71.98 0.60 -3.14 16 2 C -0.08 -2.58 0.76 -50.90 -0.04 -2.62 16 3 C -0.13 -3.29 8.20 71.98 0.59 -2.70 16 4 C -0.09 -2.70 4.14 30.30 0.13 -2.57 16 5 C 0.16 5.28 2.16 43.91 0.10 5.37 16 6 H 0.06 2.56 5.15 -2.39 -0.01 2.55 16 7 N -0.71 -17.17 4.68 -447.71 -2.09 -19.27 16 8 C 0.51 13.74 7.13 87.65 0.63 14.36 16 9 O -0.59 -22.45 15.46 -3.04 -0.05 -22.50 16 10 C -0.09 -1.62 2.09 -13.20 -0.03 -1.65 16 11 H 0.13 1.48 7.55 -2.39 -0.02 1.46 16 12 C -0.11 -2.10 3.89 28.93 0.11 -1.98 16 13 C -0.14 -1.86 5.61 30.16 0.17 -1.69 16 14 C 0.06 0.88 6.26 71.15 0.45 1.33 16 15 O -0.41 -7.32 10.88 -148.98 -1.62 -8.94 16 16 C 0.06 0.80 6.26 71.15 0.45 1.25 16 17 C -0.14 -2.15 4.93 30.17 0.15 -2.00 16 18 C -0.12 -4.95 4.91 28.36 0.14 -4.81 16 19 C 0.16 8.13 5.36 83.62 0.45 8.58 16 20 N -0.59 -29.40 2.54 -708.38 -1.80 -31.20 16 21 C -0.25 -13.26 9.28 84.03 0.78 -12.48 16 22 H 0.07 3.67 6.69 -2.91 -0.02 3.65 16 23 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 24 N -0.93 -56.01 11.25 21.65 0.24 -55.77 16 25 Si 0.96 44.79 29.60 68.60 2.03 46.82 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C 0.16 6.99 4.02 87.60 0.35 7.34 16 30 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.43 6.64 -2.38 -0.02 1.42 16 33 H 0.04 1.13 7.55 -2.38 -0.02 1.11 16 34 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.95 6.66 -2.39 -0.02 1.93 16 37 H 0.08 1.82 7.67 -2.39 -0.02 1.81 16 38 H 0.41 6.73 7.70 -92.71 -0.71 6.02 16 39 H 0.06 1.35 7.93 -2.38 -0.02 1.33 16 40 H 0.05 1.17 7.46 -2.39 -0.02 1.15 16 41 H 0.09 0.97 7.15 -2.39 -0.02 0.95 16 42 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 0.71 6.67 -2.39 -0.02 0.70 16 45 H 0.07 0.65 6.67 -2.39 -0.02 0.64 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.25 7.15 -2.39 -0.02 1.23 16 48 H 0.10 1.22 6.99 -2.39 -0.02 1.21 16 49 H 0.06 2.34 6.93 -2.39 -0.02 2.32 16 50 H 0.04 1.42 8.02 -2.39 -0.02 1.40 16 51 H 0.07 3.89 5.64 -2.39 -0.01 3.88 16 52 H -0.01 -0.32 8.12 -2.39 -0.02 -0.34 16 53 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 54 H 0.01 0.55 6.68 -2.39 -0.02 0.53 16 55 H 0.02 0.94 7.84 -2.38 -0.02 0.92 16 Total: -1.00 -71.52 398.06 2.30 -69.22 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.16 Total: 21.51 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.42 Total: 0.13 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.65 Total: -106.24 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.67 Total: -31.44 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.52 2.30 -69.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089370548.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.746 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds