Wall clock time and date at job start Tue Mar 31 2020 21:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.52308 * 2 1 4 4 O 1.21280 * 120.00549 * 119.87078 * 3 2 1 5 5 N 1.34778 * 119.99825 * 299.86846 * 3 2 1 6 6 C 1.46497 * 120.00215 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.32738 * 37.00785 * 6 5 3 8 8 C 1.52530 * 110.24838 * 275.00296 * 6 5 3 9 9 C 1.46244 * 114.27485 * 151.61917 * 8 6 5 10 10 N 1.50167 * 107.53097 * 58.40395 * 9 8 6 11 11 C 1.36944 * 120.53116 * 109.56502 * 10 9 8 12 12 H 1.08002 * 119.99943 * 156.70414 * 11 10 9 13 13 C 1.38812 * 119.99982 * 336.71021 * 11 10 9 14 14 N 1.31619 * 120.00184 * 340.40568 * 13 11 10 15 15 Si 1.86804 * 119.99936 * 160.40719 * 13 11 10 16 16 H 1.48498 * 109.47121 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47019 * 119.99503 * 15 13 11 18 18 H 1.48491 * 109.47203 * 239.99577 * 15 13 11 19 19 C 1.43433 * 118.93692 * 289.58932 * 10 9 8 20 20 C 1.54901 * 116.07686 * 91.56650 * 19 10 9 21 21 C 1.52998 * 109.36058 * 78.84720 * 20 19 10 22 22 C 1.52997 * 109.35877 * 198.58094 * 20 19 10 23 23 C 1.50012 * 110.34062 * 159.11804 * 6 5 3 24 24 C 1.53180 * 109.57102 * 120.15447 * 2 1 3 25 25 C 1.53180 * 109.03598 * 176.91925 * 24 2 1 26 26 C 1.53090 * 109.15929 * 303.01794 * 25 24 2 27 27 O 1.42908 * 109.41843 * 57.61186 * 26 25 24 28 28 C 1.42901 * 114.09245 * 298.84059 * 27 26 25 29 29 H 1.09002 * 109.46567 * 60.00310 * 1 2 3 30 30 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47150 * 300.00352 * 1 2 3 32 32 H 0.97002 * 119.99948 * 0.02562 * 5 3 2 33 33 H 1.09002 * 108.52688 * 30.37945 * 8 6 5 34 34 H 1.09001 * 108.40085 * 272.76595 * 8 6 5 35 35 H 1.08998 * 109.84447 * 298.89934 * 9 8 6 36 36 H 1.09002 * 109.84645 * 177.91453 * 9 8 6 37 37 H 0.96993 * 120.00272 * 180.02562 * 14 13 11 38 38 H 1.09002 * 108.15561 * 329.85100 * 19 10 9 39 39 H 1.08990 * 108.16355 * 213.28472 * 19 10 9 40 40 H 1.08995 * 109.47333 * 179.72410 * 21 20 19 41 41 H 1.08993 * 109.47069 * 299.73399 * 21 20 19 42 42 H 1.09009 * 109.46713 * 59.72716 * 21 20 19 43 43 H 1.09000 * 109.47008 * 300.26551 * 22 20 19 44 44 H 1.08993 * 109.47492 * 60.27129 * 22 20 19 45 45 H 1.09000 * 109.47034 * 180.27419 * 22 20 19 46 46 H 1.09002 * 109.28565 * 96.36488 * 23 6 5 47 47 H 1.08998 * 109.06938 * 337.09581 * 23 6 5 48 48 H 1.09002 * 109.54238 * 296.78434 * 24 2 1 49 49 H 1.09003 * 109.54354 * 57.05144 * 24 2 1 50 50 H 1.08996 * 109.52013 * 183.11733 * 25 24 2 51 51 H 1.08995 * 109.51905 * 62.92125 * 25 24 2 52 52 H 1.09006 * 109.48497 * 297.62577 * 26 25 24 53 53 H 1.09000 * 109.47678 * 177.59087 * 26 25 24 54 54 H 1.09005 * 109.48259 * 301.16924 * 28 27 26 55 55 H 1.09007 * 109.48087 * 181.13983 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7293 1.8171 0.9107 5 7 1.7110 2.2497 -1.0122 6 6 2.2010 3.6303 -1.0126 7 1 3.2136 3.6728 -0.6115 8 6 1.2713 4.5206 -0.1943 9 6 1.9283 5.6760 0.4157 10 7 2.5437 6.4829 -0.6912 11 6 2.0237 7.7022 -1.0353 12 1 2.6436 8.4322 -1.5345 13 6 0.6999 7.9999 -0.7423 14 7 -0.1549 7.0288 -0.4998 15 14 0.1316 9.7786 -0.6922 16 1 1.2770 10.6730 -0.9979 17 1 -0.9402 9.9844 -1.6994 18 1 -0.3936 10.0926 0.6607 19 6 3.6845 5.9559 -1.3827 20 6 3.3851 5.1190 -2.6513 21 6 3.0772 6.0594 -3.8183 22 6 4.6073 4.2658 -2.9962 23 6 2.1679 4.1949 -2.4020 24 6 2.0432 -0.7250 1.2480 25 6 3.5729 -0.7855 1.1971 26 6 4.0056 -1.4794 -0.0970 27 8 3.4696 -0.7724 -1.2174 28 6 2.0417 -0.7243 -1.2479 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1543 1.9324 -1.7405 33 1 0.8236 3.9192 0.5970 34 1 0.4757 4.8794 -0.8472 35 1 2.7039 5.3401 1.1039 36 1 1.1945 6.2797 0.9499 37 1 -1.0799 7.2368 -0.2955 38 1 4.2441 5.3303 -0.6872 39 1 4.3235 6.7909 -1.6695 40 1 2.8710 5.4724 -4.7132 41 1 2.2067 6.6682 -3.5743 42 1 3.9349 6.7076 -3.9985 43 1 5.4642 4.9148 -3.1769 44 1 4.8282 3.5951 -2.1659 45 1 4.4003 3.6797 -3.8916 46 1 1.2498 4.7670 -2.5363 47 1 2.1870 3.3752 -3.1201 48 1 1.7291 -0.1826 2.1398 49 1 1.6389 -1.7370 1.2739 50 1 3.9438 -1.3482 2.0537 51 1 3.9784 0.2260 1.2212 52 1 3.6337 -2.5041 -0.1021 53 1 5.0938 -1.4872 -0.1590 54 1 1.6441 -1.7390 -1.2680 55 1 1.7150 -0.1881 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089528688.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:45 Heat of formation + Delta-G solvation = -87.539137 kcal Electronic energy + Delta-G solvation = -33102.128807 eV Core-core repulsion = 29138.515139 eV Total energy + Delta-G solvation = -3963.613667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.87779 -40.41412 -38.90384 -36.26483 -35.95388 -35.45531 -33.56129 -32.94547 -31.91287 -29.07347 -28.05034 -27.87649 -27.31625 -26.03671 -25.30305 -24.47737 -23.17692 -22.41885 -21.49933 -20.60933 -19.31287 -18.57419 -17.91531 -17.37033 -16.94029 -16.86330 -16.58974 -16.07342 -15.90323 -15.55233 -15.38850 -15.25550 -15.19301 -14.95996 -14.62406 -14.21407 -13.86042 -13.59710 -13.52698 -13.48501 -13.25945 -13.14031 -13.04733 -12.97206 -12.88081 -12.87164 -12.68337 -12.51809 -12.34145 -12.26423 -11.98734 -11.90858 -11.63336 -11.55498 -11.52092 -11.43195 -11.32145 -11.13714 -10.99423 -10.62003 -10.48268 -10.25759 -9.79667 -8.62852 -7.79007 -5.18653 1.46400 1.51125 1.58793 1.76966 2.28085 2.55931 3.00237 3.33957 3.53011 3.56845 3.67159 3.84043 3.98988 3.99452 4.07092 4.08637 4.16155 4.29104 4.44429 4.48545 4.49943 4.55832 4.56326 4.70091 4.71059 4.73696 4.75072 4.78922 4.87963 4.89439 4.92904 4.95098 4.98666 5.03933 5.07890 5.11887 5.20456 5.22375 5.25126 5.26946 5.32660 5.35457 5.47011 5.50612 5.53385 5.64776 5.69242 5.77351 5.82968 6.07675 6.25446 6.44527 6.70731 7.19315 7.41638 7.92235 8.45482 9.25914 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003635 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.397601 B = 7700.328356 C = 8506.236284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.524 3.476 4 O -0.580 6.580 5 N -0.709 5.709 6 C 0.167 3.833 7 H 0.060 0.940 8 C -0.112 4.112 9 C 0.175 3.825 10 N -0.595 5.595 11 C -0.246 4.246 12 H 0.063 0.937 13 C -0.040 4.040 14 N -0.916 5.916 15 Si 0.952 3.048 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.297 1.297 19 C 0.164 3.836 20 C -0.085 4.085 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.095 4.095 25 C -0.167 4.167 26 C 0.060 3.940 27 O -0.402 6.402 28 C 0.073 3.927 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.406 0.594 33 H 0.013 0.987 34 H 0.079 0.921 35 H 0.001 0.999 36 H 0.059 0.941 37 H 0.245 0.755 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.055 0.945 52 H 0.076 0.924 53 H 0.094 0.906 54 H 0.093 0.907 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -20.306 -3.961 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C 0.311 3.689 4 O -0.460 6.460 5 N -0.360 5.360 6 C 0.062 3.938 7 H 0.078 0.922 8 C -0.152 4.152 9 C 0.051 3.949 10 N -0.316 5.316 11 C -0.376 4.376 12 H 0.080 0.920 13 C -0.236 4.236 14 N -0.562 5.562 15 Si 0.782 3.218 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.225 1.225 19 C 0.036 3.964 20 C -0.089 4.089 21 C -0.177 4.177 22 C -0.183 4.183 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.205 4.205 26 C -0.016 4.016 27 O -0.321 6.321 28 C -0.004 4.004 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.242 0.758 33 H 0.032 0.968 34 H 0.097 0.903 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.118 0.882 50 H 0.103 0.897 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.112 0.888 54 H 0.111 0.889 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.336 -19.876 -3.412 20.441 hybrid contribution -1.001 1.332 0.460 1.728 sum 2.335 -18.544 -2.952 18.923 Atomic orbital electron populations 1.21806 0.90109 1.04709 1.02824 1.21577 0.98886 0.91098 1.00018 1.20926 0.78949 0.88051 0.80951 1.90614 1.39822 1.78224 1.37336 1.46068 1.53253 1.11514 1.25153 1.19958 0.96745 0.80057 0.97032 0.92173 1.21076 0.99639 0.95392 0.99085 1.19893 0.94087 0.91745 0.89184 1.44279 1.33973 1.18598 1.34751 1.19338 0.92974 0.90688 1.34593 0.91951 1.25426 0.95684 0.99792 1.02688 1.70110 1.02522 1.30547 1.53068 0.85448 0.77692 0.82223 0.76474 1.19884 1.22117 1.22456 1.20593 0.88984 0.94933 0.91886 1.21831 0.94684 0.95357 0.96998 1.21632 1.00812 0.98534 0.96724 1.21732 0.96792 0.98871 1.00874 1.21588 0.98880 0.97936 0.94370 1.21455 0.95568 1.00685 0.95556 1.22332 0.96716 1.02156 0.99255 1.22724 0.99375 0.94997 0.84539 1.87950 1.20895 1.77145 1.46105 1.22803 0.80856 1.01169 0.95586 0.91002 0.88207 0.93232 0.75817 0.96796 0.90265 0.98127 0.92228 0.94523 0.95843 0.95250 0.92343 0.94562 0.93046 0.92200 0.94116 0.91531 0.93140 0.91173 0.92886 0.88200 0.89670 0.92633 0.90611 0.88809 0.88903 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.39 71.98 0.60 -1.66 16 2 C -0.11 -2.39 0.63 -52.84 -0.03 -2.42 16 3 C 0.52 16.61 5.76 87.65 0.50 17.12 16 4 O -0.58 -23.77 13.57 -3.03 -0.04 -23.81 16 5 N -0.71 -21.85 4.79 -447.89 -2.14 -24.00 16 6 C 0.17 6.35 2.10 43.87 0.09 6.44 16 7 H 0.06 2.61 5.27 -2.39 -0.01 2.60 16 8 C -0.11 -5.12 4.73 28.36 0.13 -4.98 16 9 C 0.18 8.88 5.24 83.58 0.44 9.32 16 10 N -0.59 -29.66 2.60 -707.83 -1.84 -31.50 16 11 C -0.25 -13.19 8.95 84.03 0.75 -12.44 16 12 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 13 C -0.04 -2.17 4.91 84.86 0.42 -1.76 16 14 N -0.92 -51.14 9.43 21.65 0.20 -50.93 16 15 Si 0.95 44.68 29.60 68.60 2.03 46.71 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 19 C 0.16 7.01 4.00 87.60 0.35 7.36 16 20 C -0.08 -3.01 0.77 -50.90 -0.04 -3.05 16 21 C -0.12 -4.15 8.29 71.98 0.60 -3.55 16 22 C -0.13 -3.65 8.21 71.98 0.59 -3.06 16 23 C -0.09 -3.21 4.13 30.26 0.13 -3.08 16 24 C -0.09 -1.96 4.46 30.71 0.14 -1.83 16 25 C -0.17 -3.74 5.81 30.68 0.18 -3.57 16 26 C 0.06 1.12 6.84 72.01 0.49 1.61 16 27 O -0.40 -9.26 10.45 -148.98 -1.56 -10.82 16 28 C 0.07 1.25 5.46 72.01 0.39 1.65 16 29 H 0.07 1.08 7.58 -2.39 -0.02 1.06 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.41 9.87 7.27 -92.71 -0.67 9.20 16 33 H 0.01 0.63 7.90 -2.39 -0.02 0.62 16 34 H 0.08 4.01 5.27 -2.39 -0.01 4.00 16 35 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 36 H 0.06 3.37 6.05 -2.39 -0.01 3.35 16 37 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.02 1.01 6.68 -2.39 -0.02 0.99 16 39 H 0.03 1.25 7.83 -2.39 -0.02 1.24 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.51 7.46 -2.39 -0.02 1.49 16 42 H 0.05 1.66 8.13 -2.38 -0.02 1.64 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.26 7.55 -2.39 -0.02 1.24 16 45 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 46 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 47 H 0.07 2.08 7.63 -2.39 -0.02 2.06 16 48 H 0.05 1.32 8.02 -2.39 -0.02 1.30 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.05 1.76 5.82 -2.39 -0.01 1.74 16 52 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 53 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 54 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 55 H 0.10 1.58 7.51 -2.38 -0.02 1.56 16 Total: -1.00 -67.45 398.79 2.58 -64.88 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.19 Total: 27.38 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.74 Total: 2.09 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.78 Total: -106.43 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.60 Total: -34.63 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.45 2.58 -64.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089528688.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.662 kcal (2) G-P(sol) polarization free energy of solvation -67.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds