Wall clock time and date at job start Tue Mar 31 2020 21:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.52384 * 2 1 4 4 O 1.21279 * 119.99673 * 119.99895 * 3 2 1 5 5 N 1.34777 * 120.00309 * 300.00421 * 3 2 1 6 6 C 1.46504 * 119.99993 * 179.97438 * 5 3 2 7 7 H 1.08999 * 108.31423 * 327.38595 * 6 5 3 8 8 C 1.47093 * 108.50911 * 84.99803 * 6 5 3 9 9 C 1.54870 * 110.17831 * 184.14022 * 8 6 5 10 10 N 1.44667 * 109.55847 * 288.47620 * 9 8 6 11 11 C 1.36935 * 118.80999 * 270.94718 * 10 9 8 12 12 H 1.08007 * 120.00210 * 27.25761 * 11 10 9 13 13 C 1.38816 * 119.99888 * 207.25864 * 11 10 9 14 14 N 1.31609 * 119.99887 * 16.35264 * 13 11 10 15 15 Si 1.86808 * 119.99888 * 196.35819 * 13 11 10 16 16 H 1.48500 * 109.46954 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46950 * 119.99638 * 15 13 11 18 18 H 1.48500 * 109.46748 * 239.99636 * 15 13 11 19 19 C 1.47599 * 122.54318 * 90.96167 * 10 9 8 20 20 C 1.53950 * 112.13850 * 317.85144 * 19 10 9 21 21 C 1.53003 * 109.36539 * 199.24258 * 20 19 10 22 22 C 1.52998 * 109.26086 * 79.56814 * 20 19 10 23 23 C 1.50870 * 110.09841 * 319.43614 * 20 19 10 24 24 C 1.53177 * 109.52170 * 120.13138 * 2 1 3 25 25 C 1.53178 * 109.03140 * 176.94741 * 24 2 1 26 26 C 1.53088 * 109.16586 * 303.01456 * 25 24 2 27 27 O 1.42904 * 109.41165 * 57.61410 * 26 25 24 28 28 C 1.43033 * 114.13243 * 298.83475 * 27 26 25 29 29 H 1.09001 * 109.46854 * 59.99673 * 1 2 3 30 30 H 1.08996 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46838 * 299.99881 * 1 2 3 32 32 H 0.96996 * 120.00075 * 359.97438 * 5 3 2 33 33 H 1.08996 * 109.33471 * 304.31452 * 8 6 5 34 34 H 1.09002 * 109.32438 * 63.96895 * 8 6 5 35 35 H 1.08991 * 109.44723 * 48.69216 * 9 8 6 36 36 H 1.08995 * 109.44891 * 168.61602 * 9 8 6 37 37 H 0.97008 * 120.00083 * 180.02562 * 14 13 11 38 38 H 1.09003 * 108.94610 * 197.17131 * 19 10 9 39 39 H 1.09002 * 108.95047 * 78.54232 * 19 10 9 40 40 H 1.08995 * 109.47116 * 180.64064 * 21 20 19 41 41 H 1.09001 * 109.47519 * 300.64009 * 21 20 19 42 42 H 1.09001 * 109.46912 * 60.64000 * 21 20 19 43 43 H 1.09001 * 109.47258 * 299.89071 * 22 20 19 44 44 H 1.09003 * 109.47712 * 59.88937 * 22 20 19 45 45 H 1.08997 * 109.47324 * 179.89305 * 22 20 19 46 46 H 1.09004 * 109.49134 * 331.93068 * 23 20 19 47 47 H 1.08999 * 109.49178 * 211.85555 * 23 20 19 48 48 H 1.09001 * 109.54262 * 296.81351 * 24 2 1 49 49 H 1.08994 * 109.54323 * 57.08046 * 24 2 1 50 50 H 1.08994 * 109.52544 * 62.92836 * 25 24 2 51 51 H 1.09008 * 109.51755 * 183.05394 * 25 24 2 52 52 H 1.09003 * 109.48154 * 177.59526 * 26 25 24 53 53 H 1.09001 * 109.48485 * 297.62119 * 26 25 24 54 54 H 1.09001 * 109.46880 * 301.19197 * 28 27 26 55 55 H 1.09001 * 109.56837 * 181.11331 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7313 1.8163 0.9096 5 7 1.7088 2.2506 -1.0108 6 6 2.1980 3.6315 -1.0104 7 1 2.2676 3.9700 0.0234 8 6 3.5457 3.6497 -1.5995 9 6 4.1427 5.0766 -1.5236 10 7 3.4598 5.9381 -2.4640 11 6 3.9365 6.0262 -3.7447 12 1 4.4800 5.1988 -4.1768 13 6 3.7214 7.1789 -4.4876 14 7 3.3569 8.2912 -3.8857 15 14 3.9492 7.1514 -6.3415 16 1 4.3592 5.7899 -6.7697 17 1 2.6701 7.5146 -7.0028 18 1 4.9998 8.1281 -6.7256 19 6 2.2677 6.7271 -2.0969 20 6 1.2836 5.9219 -1.2289 21 6 -0.0962 6.5809 -1.2820 22 6 1.7828 5.9059 0.2172 23 6 1.1817 4.5057 -1.7389 24 6 2.0419 -0.7247 1.2486 25 6 3.5717 -0.7852 1.1992 26 6 4.0057 -1.4795 -0.0943 27 8 3.4707 -0.7727 -1.2153 28 6 2.0416 -0.7242 -1.2481 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1511 1.9338 -1.7384 33 1 4.1882 2.9602 -1.0520 34 1 3.4877 3.3378 -2.6424 35 1 4.0206 5.4678 -0.5137 36 1 5.2033 5.0400 -1.7725 37 1 3.2062 9.0966 -4.4049 38 1 1.7589 7.0441 -3.0073 39 1 2.5850 7.6116 -1.5445 40 1 -0.7916 6.0186 -0.6589 41 1 -0.0245 7.6044 -0.9139 42 1 -0.4555 6.5893 -2.3111 43 1 2.7675 5.4401 0.2566 44 1 1.8492 6.9279 0.5902 45 1 1.0874 5.3380 0.8354 46 1 1.3883 4.4887 -2.8090 47 1 0.1769 4.1247 -1.5560 48 1 1.7270 -0.1821 2.1400 49 1 1.6376 -1.7366 1.2744 50 1 3.9772 0.2262 1.2235 51 1 3.9419 -1.3468 2.0570 52 1 5.0940 -1.4873 -0.1552 53 1 3.6339 -2.5041 -0.0994 54 1 1.6440 -1.7389 -1.2683 55 1 1.7149 -0.1879 -2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089528689.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:50 Heat of formation + Delta-G solvation = -78.647938 kcal Electronic energy + Delta-G solvation = -32927.852244 eV Core-core repulsion = 28964.624128 eV Total energy + Delta-G solvation = -3963.228116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.97785 -40.70448 -38.96237 -36.40353 -35.79868 -35.45762 -33.88869 -33.01542 -31.43595 -28.92353 -28.22952 -27.86145 -27.35330 -26.05687 -25.82821 -24.64234 -23.30760 -22.39063 -21.21401 -20.63080 -19.28748 -18.52964 -17.96945 -17.53198 -17.00620 -16.93050 -16.57432 -16.11729 -15.98471 -15.63144 -15.43943 -15.33555 -15.11078 -14.82991 -14.53405 -14.21954 -14.12476 -13.84433 -13.57632 -13.50834 -13.28660 -13.14925 -12.99850 -12.98920 -12.94208 -12.87034 -12.84767 -12.63492 -12.27216 -12.12226 -12.03776 -11.94111 -11.77737 -11.62717 -11.55732 -11.51032 -11.36682 -11.08242 -10.78128 -10.62068 -10.44202 -10.24316 -9.90190 -8.61651 -7.83125 -5.29491 1.44859 1.47578 1.57486 1.76896 2.29320 2.52634 2.98931 3.29249 3.54867 3.67041 3.67676 3.77568 3.85192 4.01427 4.04647 4.13117 4.16182 4.22360 4.29038 4.43428 4.45959 4.49717 4.55127 4.69423 4.71796 4.72314 4.74672 4.77443 4.82275 4.83624 4.85535 4.89636 4.96193 5.00268 5.03971 5.04965 5.14306 5.20739 5.22049 5.26428 5.27369 5.29172 5.41628 5.47893 5.52090 5.57038 5.67436 5.69484 5.74970 5.87589 6.25113 6.43213 6.70652 7.21442 7.40847 7.97099 8.37215 9.21412 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.003554 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.952286 B = 7877.408813 C = 8709.210325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.525 3.475 4 O -0.578 6.578 5 N -0.717 5.717 6 C 0.151 3.849 7 H 0.086 0.914 8 C -0.129 4.129 9 C 0.150 3.850 10 N -0.598 5.598 11 C -0.263 4.263 12 H 0.058 0.942 13 C -0.042 4.042 14 N -0.931 5.931 15 Si 0.959 3.041 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.295 1.295 19 C 0.207 3.793 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.090 4.090 24 C -0.093 4.093 25 C -0.167 4.167 26 C 0.058 3.942 27 O -0.407 6.407 28 C 0.069 3.931 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.404 0.596 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.029 0.971 37 H 0.248 0.752 38 H 0.041 0.959 39 H -0.010 1.010 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.057 0.943 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.074 0.926 54 H 0.091 0.909 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 -20.633 8.808 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C 0.312 3.688 4 O -0.458 6.458 5 N -0.367 5.367 6 C 0.047 3.953 7 H 0.104 0.896 8 C -0.170 4.170 9 C 0.023 3.977 10 N -0.320 5.320 11 C -0.393 4.393 12 H 0.076 0.924 13 C -0.238 4.238 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.222 1.222 19 C 0.082 3.918 20 C -0.086 4.086 21 C -0.183 4.183 22 C -0.203 4.203 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.205 4.205 26 C -0.018 4.018 27 O -0.326 6.326 28 C -0.008 4.008 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.240 0.760 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.008 0.992 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.076 0.924 51 H 0.103 0.897 52 H 0.107 0.893 53 H 0.092 0.908 54 H 0.109 0.891 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.463 -20.099 9.263 24.069 hybrid contribution 0.385 0.613 -1.206 1.406 sum -9.079 -19.486 8.057 22.957 Atomic orbital electron populations 1.21802 0.89578 1.04714 1.03209 1.21571 0.99312 0.91266 0.99476 1.20850 0.78988 0.87946 0.80986 1.90605 1.39414 1.77830 1.37904 1.46275 1.53138 1.12194 1.25082 1.20023 0.92853 0.80821 1.01584 0.89583 1.21546 0.97034 0.98580 0.99847 1.20909 0.94193 0.89651 0.92982 1.43811 1.28831 1.51089 1.08225 1.19451 1.32121 0.97474 0.90290 0.92375 1.25678 1.01598 0.94480 1.02025 1.70232 1.52734 0.99821 1.34960 0.85339 0.76933 0.77482 0.81489 1.19474 1.21425 1.22185 1.20803 0.85420 0.89904 0.95659 1.20809 0.96493 0.95675 0.95601 1.21745 0.94687 1.00291 1.01557 1.22276 1.01352 1.01101 0.95525 1.21162 0.98060 0.93668 0.99894 1.21444 0.95138 1.00739 0.95748 1.22331 0.97129 1.02172 0.98820 1.22726 0.99217 0.95048 0.84856 1.87993 1.21178 1.77148 1.46269 1.22849 0.80726 1.01190 0.95991 0.90813 0.88719 0.92253 0.75998 0.93677 0.93575 0.93140 0.95238 0.94239 0.94041 0.99233 0.90727 0.93252 0.93246 0.92168 0.93489 0.91852 0.92793 0.89867 0.92085 0.88469 0.92433 0.89665 0.89276 0.90761 0.89124 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.38 71.98 0.60 -1.00 16 2 C -0.11 -2.05 0.63 -52.83 -0.03 -2.08 16 3 C 0.52 14.36 5.75 87.66 0.50 14.86 16 4 O -0.58 -20.53 13.33 -3.03 -0.04 -20.57 16 5 N -0.72 -18.98 4.66 -452.05 -2.11 -21.08 16 6 C 0.15 4.96 1.79 43.01 0.08 5.04 16 7 H 0.09 3.07 3.95 -2.39 -0.01 3.06 16 8 C -0.13 -4.99 5.20 29.40 0.15 -4.84 16 9 C 0.15 6.69 5.58 87.36 0.49 7.17 16 10 N -0.60 -30.00 2.27 -698.15 -1.58 -31.58 16 11 C -0.26 -14.56 9.44 84.03 0.79 -13.76 16 12 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16 13 C -0.04 -2.36 4.84 84.86 0.41 -1.95 16 14 N -0.93 -55.02 11.11 21.65 0.24 -54.77 16 15 Si 0.96 45.22 29.58 68.60 2.03 47.25 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 19 C 0.21 9.86 3.56 86.49 0.31 10.16 16 20 C -0.08 -2.99 0.75 -52.55 -0.04 -3.03 16 21 C -0.13 -3.79 8.15 71.98 0.59 -3.20 16 22 C -0.15 -4.90 6.75 71.98 0.49 -4.41 16 23 C -0.09 -2.91 4.39 29.76 0.13 -2.78 16 24 C -0.09 -1.65 4.45 30.71 0.14 -1.51 16 25 C -0.17 -3.50 5.81 30.68 0.18 -3.32 16 26 C 0.06 1.10 6.84 72.01 0.49 1.60 16 27 O -0.41 -9.82 10.45 -148.98 -1.56 -11.37 16 28 C 0.07 1.17 5.48 72.02 0.39 1.57 16 29 H 0.07 0.74 7.57 -2.39 -0.02 0.72 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.40 8.48 7.43 -92.71 -0.69 7.79 16 33 H 0.04 1.80 7.95 -2.39 -0.02 1.79 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 2.19 5.20 -2.39 -0.01 2.17 16 36 H 0.03 1.37 7.99 -2.39 -0.02 1.36 16 37 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 38 H 0.04 2.21 6.23 -2.39 -0.01 2.20 16 39 H -0.01 -0.56 7.86 -2.39 -0.02 -0.58 16 40 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 43 H 0.06 2.22 3.12 -2.39 -0.01 2.21 16 44 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 45 H 0.06 1.85 7.91 -2.39 -0.02 1.83 16 46 H 0.05 2.04 7.48 -2.38 -0.02 2.03 16 47 H 0.08 2.18 7.64 -2.39 -0.02 2.16 16 48 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 49 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.71 5.82 -2.39 -0.01 1.70 16 51 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 53 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 54 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 55 H 0.10 1.57 7.51 -2.39 -0.02 1.55 16 Total: -1.00 -70.34 396.05 2.83 -67.51 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.18 Total: 26.13 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.67 Total: -1.50 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.45 Total: -107.44 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.60 Total: -31.95 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.34 2.83 -67.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089528689.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.136 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds