Wall clock time and date at job start Tue Mar 31 2020 21:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.35794 * 2 1 4 4 C 1.54844 * 109.36173 * 119.72317 * 2 1 3 5 5 C 1.50126 * 110.81642 * 81.33654 * 4 2 1 6 6 H 1.09006 * 110.24998 * 338.71213 * 5 4 2 7 7 N 1.46508 * 110.37177 * 216.72173 * 5 4 2 8 8 C 1.34768 * 119.99879 * 158.94860 * 7 5 4 9 9 O 1.21290 * 120.00455 * 0.02562 * 8 7 5 10 10 C 1.50706 * 120.00022 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47119 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.52276 * 304.87390 * 11 10 8 13 13 C 1.53178 * 109.52151 * 184.68585 * 11 10 8 14 14 C 1.53176 * 109.03718 * 183.11477 * 13 11 10 15 15 C 1.53087 * 109.16312 * 56.97952 * 14 13 11 16 16 O 1.42907 * 109.41559 * 302.39063 * 15 14 13 17 17 C 1.42896 * 114.09516 * 61.16158 * 16 15 14 18 18 C 1.52526 * 105.41422 * 97.68548 * 5 4 2 19 19 C 1.46232 * 114.27738 * 270.59637 * 18 5 4 20 20 N 1.50171 * 107.53594 * 58.40732 * 19 18 5 21 21 C 1.36934 * 120.53681 * 109.56782 * 20 19 18 22 22 H 1.07994 * 119.99923 * 172.87243 * 21 20 19 23 23 C 1.38811 * 119.99928 * 352.86447 * 21 20 19 24 24 N 1.31621 * 120.00401 * 319.30402 * 23 21 20 25 25 Si 1.86801 * 119.99820 * 139.30103 * 23 21 20 26 26 H 1.48499 * 109.47047 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47171 * 300.00371 * 25 23 21 28 28 H 1.48504 * 109.47184 * 60.00178 * 25 23 21 29 29 C 1.43434 * 118.92590 * 289.84067 * 20 19 18 30 30 H 1.09000 * 109.47024 * 300.27424 * 1 2 3 31 31 H 1.08998 * 109.47308 * 60.27757 * 1 2 3 32 32 H 1.09001 * 109.46793 * 180.28017 * 1 2 3 33 33 H 1.09005 * 109.46693 * 179.72885 * 3 2 1 34 34 H 1.09005 * 109.46823 * 299.72212 * 3 2 1 35 35 H 1.08997 * 109.47096 * 59.72598 * 3 2 1 36 36 H 1.09005 * 109.20877 * 320.99371 * 4 2 1 37 37 H 1.08996 * 109.17615 * 201.66121 * 4 2 1 38 38 H 0.96996 * 119.99689 * 338.94886 * 7 5 4 39 39 H 1.09000 * 109.46494 * 299.99792 * 10 8 7 40 40 H 1.08998 * 109.46785 * 60.00098 * 10 8 7 41 41 H 1.09008 * 109.54382 * 302.97907 * 13 11 10 42 42 H 1.08999 * 109.54370 * 63.24679 * 13 11 10 43 43 H 1.09002 * 109.52323 * 297.07048 * 14 13 11 44 44 H 1.09008 * 109.57329 * 176.91694 * 14 13 11 45 45 H 1.09006 * 109.47801 * 182.41080 * 15 14 13 46 46 H 1.08997 * 109.48345 * 62.37425 * 15 14 13 47 47 H 1.09004 * 109.47726 * 178.86534 * 17 16 15 48 48 H 1.08994 * 109.49593 * 58.82858 * 17 16 15 49 49 H 1.09003 * 108.52237 * 149.34992 * 18 5 4 50 50 H 1.09000 * 108.51642 * 31.83725 * 18 5 4 51 51 H 1.09003 * 109.84428 * 298.89537 * 19 18 5 52 52 H 1.09004 * 109.90386 * 177.95210 * 19 18 5 53 53 H 0.97000 * 119.99297 * 353.66783 * 24 23 21 54 54 H 1.08991 * 108.15952 * 213.02935 * 29 20 19 55 55 H 1.09000 * 108.15911 * 329.59958 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4435 0.0000 4 6 2.0433 -0.7243 1.2687 5 6 2.0208 -2.2134 1.0788 6 1 1.3254 -2.4818 0.2835 7 7 1.6439 -2.8810 2.3273 8 6 1.1535 -4.1359 2.2988 9 8 1.0244 -4.7129 1.2398 10 6 0.7653 -4.8226 3.5830 11 6 0.2428 -6.2267 3.2728 12 1 -0.5737 -6.1609 2.5537 13 6 -0.2608 -6.8820 4.5626 14 6 -0.7086 -8.3138 4.2536 15 6 0.4592 -9.0820 3.6293 16 8 0.8991 -8.4027 2.4515 17 6 1.3739 -7.0755 2.6864 18 6 3.4447 -2.5935 0.6858 19 6 3.6999 -2.5615 -0.7537 20 7 3.4056 -1.1696 -1.2346 21 6 4.4212 -0.3414 -1.6316 22 1 4.1944 0.6131 -2.0831 23 6 5.7423 -0.7286 -1.4537 24 7 6.1063 -1.3365 -0.3445 25 14 7.0035 -0.3869 -2.7886 26 1 8.3305 -0.8957 -2.3578 27 1 6.5950 -1.0703 -4.0422 28 1 7.0876 1.0764 -3.0274 29 6 2.0440 -0.7198 -1.2656 30 1 -0.3633 0.5181 0.8875 31 1 -0.3634 0.5095 -0.8924 32 1 -0.3633 -1.0277 0.0050 33 1 3.1272 1.4456 0.0049 34 1 1.6768 1.9552 -0.8925 35 1 1.6688 1.9580 0.8875 36 1 1.4076 -0.4609 2.1140 37 1 3.0647 -0.4045 1.4749 38 1 1.7475 -2.4198 3.1743 39 1 1.6366 -4.8950 4.2339 40 1 -0.0141 -4.2464 4.0818 41 1 0.5426 -6.9021 5.2991 42 1 -1.1034 -6.3132 4.9556 43 1 -1.5448 -8.2912 3.5548 44 1 -1.0175 -8.8068 5.1755 45 1 0.1337 -10.0889 3.3680 46 1 1.2802 -9.1391 4.3439 47 1 1.7072 -6.6369 1.7458 48 1 2.2069 -7.1062 3.3886 49 1 3.6477 -3.6002 1.0512 50 1 4.1342 -1.9057 1.1752 51 1 3.0490 -3.2737 -1.2609 52 1 4.7431 -2.8085 -0.9512 53 1 5.4750 -1.4322 0.3856 54 1 1.9308 -0.0376 -2.1081 55 1 1.4048 -1.5839 -1.4469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089563758.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:54 Heat of formation + Delta-G solvation = -92.038644 kcal Electronic energy + Delta-G solvation = -31913.159616 eV Core-core repulsion = 27949.350835 eV Total energy + Delta-G solvation = -3963.808781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.51972 -40.51039 -39.50798 -36.57009 -36.13893 -35.34727 -33.39565 -32.95581 -32.40931 -29.59172 -28.23148 -28.13071 -27.04846 -25.95237 -25.27198 -24.00317 -23.01955 -22.02951 -21.41616 -20.94931 -19.68187 -18.97458 -17.93175 -17.46375 -17.29851 -16.95769 -16.71525 -16.19415 -15.95334 -15.63848 -15.59751 -15.49849 -15.27067 -15.04324 -14.94555 -14.43194 -13.97498 -13.82514 -13.73109 -13.53680 -13.46956 -13.43772 -13.15982 -12.88271 -12.72322 -12.60848 -12.46079 -12.37537 -12.12598 -12.00976 -11.93665 -11.89614 -11.79123 -11.72127 -11.66861 -11.55379 -11.30890 -11.24628 -11.23546 -10.63355 -10.37910 -10.29366 -9.93371 -8.91938 -8.27348 -5.07066 1.58855 1.65962 1.69459 1.84439 2.22003 2.68646 2.98271 3.14703 3.39774 3.65659 3.77376 3.79274 3.83490 3.91124 3.95447 4.03680 4.06470 4.23132 4.27548 4.29065 4.36472 4.38634 4.55912 4.57437 4.63355 4.64296 4.69814 4.73684 4.75340 4.82331 4.84883 4.85655 4.90658 4.97573 4.98840 5.06407 5.09490 5.11377 5.12155 5.15503 5.21203 5.28681 5.30595 5.35344 5.42313 5.43314 5.48355 5.61973 5.67943 5.93291 6.29704 6.47500 6.63912 7.09677 7.35137 7.86180 8.34316 9.05339 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002989 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.199314 B = 9366.370247 C =10646.836930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.093 4.093 5 C 0.166 3.834 6 H 0.070 0.930 7 N -0.712 5.712 8 C 0.502 3.498 9 O -0.581 6.581 10 C -0.124 4.124 11 C -0.101 4.101 12 H 0.062 0.938 13 C -0.113 4.113 14 C -0.153 4.153 15 C 0.046 3.954 16 O -0.411 6.411 17 C 0.059 3.941 18 C -0.122 4.122 19 C 0.141 3.859 20 N -0.600 5.600 21 C -0.351 4.351 22 H 0.057 0.943 23 C -0.064 4.064 24 N -0.929 5.929 25 Si 1.083 2.917 26 H -0.296 1.296 27 H -0.293 1.293 28 H -0.279 1.279 29 C 0.165 3.835 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.034 0.966 50 H 0.052 0.948 51 H 0.021 0.979 52 H 0.061 0.939 53 H 0.267 0.733 54 H 0.027 0.973 55 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.580 -6.614 15.731 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.179 4.179 4 C -0.131 4.131 5 C 0.061 3.939 6 H 0.088 0.912 7 N -0.364 5.364 8 C 0.290 3.710 9 O -0.460 6.460 10 C -0.164 4.164 11 C -0.120 4.120 12 H 0.080 0.920 13 C -0.150 4.150 14 C -0.191 4.191 15 C -0.030 4.030 16 O -0.331 6.331 17 C -0.017 4.017 18 C -0.162 4.162 19 C 0.016 3.984 20 N -0.322 5.322 21 C -0.479 4.479 22 H 0.075 0.925 23 C -0.263 4.263 24 N -0.573 5.573 25 Si 0.911 3.089 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.206 1.206 29 C 0.037 3.963 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.250 0.750 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.070 0.930 51 H 0.039 0.961 52 H 0.080 0.920 53 H 0.080 0.920 54 H 0.045 0.955 55 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.080 -7.315 14.327 21.378 hybrid contribution -0.906 0.624 0.500 1.208 sum -14.985 -6.691 14.827 22.117 Atomic orbital electron populations 1.21740 0.92950 1.01263 1.02384 1.21794 0.95736 0.95635 0.95942 1.21666 1.00003 0.95174 1.01066 1.21641 1.00855 0.92397 0.98228 1.19930 0.94403 0.92795 0.86744 0.91172 1.46114 1.64727 1.15650 1.09891 1.21477 0.75984 0.81295 0.92253 1.90701 1.55605 1.65231 1.34512 1.21736 1.04956 0.95638 0.94066 1.21462 0.98398 0.93593 0.98591 0.91965 1.21666 1.02249 0.95579 0.95494 1.22177 0.98305 0.96468 1.02129 1.22844 0.96522 0.96344 0.87256 1.87942 1.83480 1.27879 1.33794 1.22786 0.95395 0.82103 1.01417 1.21195 0.97199 0.99524 0.98302 1.20310 0.99850 0.85343 0.92876 1.44418 1.02378 1.09263 1.76167 1.19976 0.88061 1.02789 1.37097 0.92485 1.26382 0.98024 1.00787 1.01068 1.70918 1.36937 1.46629 1.02825 0.83272 0.74352 0.76307 0.75002 1.22236 1.21995 1.20553 1.20457 0.84754 0.95848 0.95233 0.91031 0.92376 0.93540 0.95110 0.93191 0.91853 0.89873 0.93759 0.75000 0.86477 0.85293 0.90120 0.89435 0.92099 0.88393 0.88220 0.92270 0.90628 0.92717 0.94688 0.92952 0.96065 0.92030 0.92012 0.95513 0.95357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.20 71.98 0.59 -2.68 16 2 C -0.09 -2.89 0.76 -51.07 -0.04 -2.93 16 3 C -0.12 -4.05 8.27 71.98 0.60 -3.46 16 4 C -0.09 -2.98 4.15 30.30 0.13 -2.86 16 5 C 0.17 5.66 2.10 43.91 0.09 5.75 16 6 H 0.07 2.73 5.27 -2.38 -0.01 2.72 16 7 N -0.71 -18.19 5.01 -447.69 -2.24 -20.43 16 8 C 0.50 13.43 7.42 87.66 0.65 14.08 16 9 O -0.58 -21.48 13.69 -3.06 -0.04 -21.52 16 10 C -0.12 -2.01 5.18 29.85 0.15 -1.85 16 11 C -0.10 -1.98 2.03 -10.70 -0.02 -2.00 16 12 H 0.06 1.54 7.96 -2.39 -0.02 1.52 16 13 C -0.11 -1.40 5.31 30.71 0.16 -1.24 16 14 C -0.15 -2.04 6.14 30.68 0.19 -1.85 16 15 C 0.05 0.80 6.84 72.01 0.49 1.30 16 16 O -0.41 -11.12 10.77 -148.98 -1.60 -12.72 16 17 C 0.06 1.52 5.84 72.01 0.42 1.94 16 18 C -0.12 -5.17 4.67 28.35 0.13 -5.04 16 19 C 0.14 6.95 5.22 83.58 0.44 7.38 16 20 N -0.60 -29.69 2.62 -708.86 -1.86 -31.55 16 21 C -0.35 -19.23 8.78 84.03 0.74 -18.49 16 22 H 0.06 3.18 8.05 -2.91 -0.02 3.16 16 23 C -0.06 -3.63 4.53 84.86 0.38 -3.25 16 24 N -0.93 -54.84 11.99 21.65 0.26 -54.58 16 25 Si 1.08 51.59 30.05 68.60 2.06 53.65 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 C 0.17 6.87 3.96 87.42 0.35 7.22 16 30 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.24 7.57 -2.39 -0.02 1.23 16 33 H 0.03 1.25 7.45 -2.38 -0.02 1.23 16 34 H 0.05 1.59 8.11 -2.38 -0.02 1.57 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.06 7.64 -2.38 -0.02 2.04 16 37 H 0.04 1.70 6.65 -2.39 -0.02 1.69 16 38 H 0.41 7.50 8.46 -92.71 -0.78 6.72 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.08 2.52 6.01 -2.39 -0.01 2.51 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.03 1.49 7.90 -2.39 -0.02 1.47 16 50 H 0.05 2.44 4.65 -2.39 -0.01 2.43 16 51 H 0.02 1.05 8.13 -2.39 -0.02 1.03 16 52 H 0.06 3.46 5.61 -2.38 -0.01 3.45 16 53 H 0.27 15.50 4.95 -92.71 -0.46 15.04 16 54 H 0.03 1.14 7.80 -2.39 -0.02 1.13 16 55 H 0.03 1.17 6.68 -2.39 -0.02 1.15 16 Total: -1.00 -71.83 401.43 2.41 -69.42 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.39 Total: 25.73 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.45 Total: -7.98 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.84 Total: -106.57 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.65 Total: -34.25 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.06 Total: 53.65 kcal Total: -71.83 2.41 -69.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089563758.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.620 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds