Wall clock time and date at job start Tue Mar 31 2020 21:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.49538 * 2 1 4 4 C 1.53036 * 109.49619 * 239.90558 * 2 1 3 5 5 C 1.53086 * 109.65771 * 178.74717 * 4 2 1 6 6 C 1.53184 * 109.29182 * 61.15264 * 5 4 2 7 7 H 1.09003 * 109.59006 * 65.44041 * 6 5 4 8 8 C 1.53008 * 109.58454 * 185.71947 * 6 5 4 9 9 N 1.46494 * 109.47049 * 180.08233 * 8 6 5 10 10 C 1.34780 * 119.99868 * 178.99593 * 9 8 6 11 11 O 1.21274 * 120.00103 * 355.28477 * 10 9 8 12 12 C 1.50697 * 119.99888 * 175.28695 * 10 9 8 13 13 C 1.53003 * 109.47414 * 250.56400 * 12 10 9 14 14 C 1.52999 * 109.47751 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47100 * 59.99827 * 14 13 12 16 16 O 1.42890 * 109.47144 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46960 * 300.00658 * 15 14 13 18 18 C 1.52999 * 109.47751 * 59.99741 * 17 15 14 19 19 N 1.46928 * 108.89597 * 305.57473 * 6 5 4 20 20 C 1.36937 * 120.63577 * 233.56375 * 19 6 5 21 21 H 1.07996 * 119.99891 * 32.65675 * 20 19 6 22 22 C 1.38808 * 119.99935 * 212.66792 * 20 19 6 23 23 N 1.31616 * 120.00236 * 10.04751 * 22 20 19 24 24 Si 1.86809 * 119.99779 * 190.05276 * 22 20 19 25 25 H 1.48501 * 109.46890 * 56.27627 * 24 22 20 26 26 H 1.48497 * 109.47195 * 176.27585 * 24 22 20 27 27 H 1.48498 * 109.47099 * 296.27996 * 24 22 20 28 28 C 1.46928 * 118.73358 * 53.54334 * 19 6 5 29 29 H 1.09004 * 109.47011 * 299.93651 * 1 2 3 30 30 H 1.08999 * 109.47343 * 59.93396 * 1 2 3 31 31 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46945 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47375 * 300.06185 * 3 2 1 34 34 H 1.08999 * 109.47217 * 60.06927 * 3 2 1 35 35 H 1.09001 * 109.46327 * 298.70091 * 4 2 1 36 36 H 1.09000 * 109.46396 * 58.66673 * 4 2 1 37 37 H 1.09001 * 109.38857 * 301.27438 * 5 4 2 38 38 H 1.08996 * 109.62065 * 181.16668 * 5 4 2 39 39 H 1.08999 * 109.46943 * 60.08442 * 8 6 5 40 40 H 1.08997 * 109.47148 * 300.08342 * 8 6 5 41 41 H 0.96997 * 120.00549 * 358.72404 * 9 8 6 42 42 H 1.09000 * 109.47748 * 10.56272 * 12 10 9 43 43 H 1.09009 * 109.46824 * 300.00617 * 13 12 10 44 44 H 1.09006 * 109.46950 * 59.99507 * 13 12 10 45 45 H 1.09004 * 109.46882 * 300.00385 * 14 13 12 46 46 H 1.08998 * 109.47206 * 180.02562 * 14 13 12 47 47 H 1.09000 * 109.46969 * 59.99774 * 15 14 13 48 48 H 0.96704 * 114.00412 * 300.00259 * 16 15 14 49 49 H 1.09009 * 109.46824 * 299.99351 * 17 15 14 50 50 H 1.09006 * 109.46950 * 180.02562 * 17 15 14 51 51 H 1.08998 * 109.47206 * 179.97438 * 18 17 15 52 52 H 1.09007 * 109.46554 * 60.00032 * 18 17 15 53 53 H 0.97006 * 120.00104 * 180.02562 * 23 22 20 54 54 H 1.09000 * 109.59059 * 66.17687 * 28 19 6 55 55 H 1.09008 * 109.58398 * 186.46399 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5713 -0.6983 -1.2678 6 6 4.1053 -1.4266 -0.0305 7 1 3.8397 -2.4824 -0.0848 8 6 5.6274 -1.2833 0.0320 9 7 6.1355 -1.9822 1.2149 10 6 7.4596 -2.0081 1.4654 11 8 8.2370 -1.5273 0.6684 12 6 7.9740 -2.6344 2.7358 13 6 8.5020 -1.5407 3.6663 14 6 9.0249 -2.1766 4.9559 15 6 10.1557 -3.1516 4.6217 16 8 10.6436 -3.7459 5.8261 17 6 9.6276 -4.2453 3.6912 18 6 9.1048 -3.6094 2.4016 19 7 3.5047 -0.8287 1.1698 20 6 4.2936 -0.3778 2.1941 21 1 5.2683 0.0366 1.9829 22 6 3.8407 -0.4535 3.5041 23 7 2.7486 -1.1325 3.7846 24 14 4.7812 0.4083 4.8688 25 1 4.9101 1.8520 4.5457 26 1 4.0481 0.2515 6.1506 27 1 6.1330 -0.1933 4.9947 28 6 2.0413 -0.7235 1.2497 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6766 1.9567 -0.8894 34 1 1.6785 1.9560 0.8906 35 1 1.6967 -1.7576 -1.2349 36 1 1.6582 -0.2250 -2.1389 37 1 3.9164 0.3356 -1.2587 38 1 3.9340 -1.1955 -2.1674 39 1 5.8906 -0.2273 0.0929 40 1 6.0702 -1.7171 -0.8645 41 1 5.5188 -2.4231 1.8200 42 1 7.1645 -3.1719 3.2297 43 1 9.3116 -1.0031 3.1724 44 1 7.6965 -0.8458 3.9040 45 1 8.2156 -2.7144 5.4499 46 1 9.4006 -1.3973 5.6189 47 1 10.9649 -2.6138 4.1277 48 1 10.9945 -3.1100 6.4645 49 1 8.8184 -4.7831 4.1853 50 1 10.4332 -4.9402 3.4535 51 1 8.7290 -4.3887 1.7386 52 1 9.9141 -3.0716 1.9077 53 1 2.4319 -1.1851 4.7000 54 1 1.6053 -1.7213 1.2984 55 1 1.7637 -0.1594 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089633873.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:31 Heat of formation + Delta-G solvation = -115.607666 kcal Electronic energy + Delta-G solvation = -32259.024033 eV Core-core repulsion = 28294.193223 eV Total energy + Delta-G solvation = -3964.830810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24602 -40.20715 -39.18496 -36.70886 -36.24213 -34.95555 -33.64431 -31.88394 -31.72698 -30.96401 -28.70812 -28.01713 -27.30989 -25.33405 -24.03982 -23.78712 -23.45859 -21.71189 -21.26932 -20.64385 -19.45030 -18.51344 -18.18858 -17.60654 -17.22506 -17.09567 -16.15596 -15.95487 -15.71937 -15.49276 -15.42001 -15.32485 -14.92633 -14.76412 -14.60332 -14.52665 -14.08749 -13.95537 -13.69301 -13.38850 -13.31161 -13.11748 -12.96879 -12.78082 -12.74207 -12.65355 -12.50277 -12.46610 -12.32028 -12.22701 -12.12788 -12.09751 -11.86769 -11.71675 -11.61270 -11.25618 -11.15863 -11.00113 -10.89961 -10.76748 -10.56335 -10.40737 -9.79860 -8.46498 -7.77461 -5.26784 1.42302 1.48069 1.50805 1.73701 2.44075 2.52848 3.24843 3.37687 3.61322 3.62590 3.68445 3.90943 4.01205 4.04839 4.08317 4.17535 4.20728 4.27391 4.33464 4.37317 4.40239 4.45113 4.45540 4.53749 4.69188 4.72301 4.77054 4.87279 4.91163 4.93745 4.95603 4.98626 5.01296 5.05964 5.10386 5.12330 5.12735 5.13876 5.16862 5.24690 5.26118 5.38347 5.40789 5.49671 5.55059 5.60791 5.69481 5.75540 5.83058 5.91372 6.50012 6.77430 6.87848 7.24867 7.39061 7.93437 8.47911 9.25866 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003706 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.426608 B = 7554.502433 C = 8756.314985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.161 3.839 7 H 0.028 0.972 8 C 0.140 3.860 9 N -0.695 5.695 10 C 0.512 3.488 11 O -0.593 6.593 12 C -0.100 4.100 13 C -0.105 4.105 14 C -0.143 4.143 15 C 0.109 3.891 16 O -0.581 6.581 17 C -0.107 4.107 18 C -0.091 4.091 19 N -0.595 5.595 20 C -0.227 4.227 21 H 0.059 0.941 22 C -0.030 4.030 23 N -0.926 5.926 24 Si 0.927 3.073 25 H -0.295 1.295 26 H -0.302 1.302 27 H -0.258 1.258 28 C 0.197 3.803 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.410 0.590 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.394 0.606 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.076 0.924 52 H 0.070 0.930 53 H 0.245 0.755 54 H -0.008 1.008 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -2.891 -3.725 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 C -0.174 4.174 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.045 0.955 8 C 0.016 3.984 9 N -0.344 5.344 10 C 0.299 3.701 11 O -0.475 6.475 12 C -0.122 4.122 13 C -0.143 4.143 14 C -0.181 4.181 15 C 0.050 3.950 16 O -0.390 6.390 17 C -0.145 4.145 18 C -0.129 4.129 19 N -0.319 5.319 20 C -0.358 4.358 21 H 0.076 0.924 22 C -0.227 4.227 23 N -0.572 5.572 24 Si 0.758 3.242 25 H -0.222 1.222 26 H -0.229 1.229 27 H -0.183 1.183 28 C 0.072 3.928 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.243 0.757 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.089 0.911 53 H 0.055 0.945 54 H 0.010 0.990 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.878 -3.122 -4.424 8.754 hybrid contribution -0.198 1.059 1.795 2.094 sum 6.680 -2.063 -2.629 7.469 Atomic orbital electron populations 1.21705 0.94279 1.01285 1.01327 1.21165 0.95301 0.95995 0.97009 1.21611 1.00742 0.95221 0.99788 1.21389 0.94873 0.99713 0.96871 1.21957 0.96416 1.00820 0.97190 1.20847 0.90190 0.95049 0.88397 0.95476 1.21217 0.93776 0.96010 0.87430 1.46180 1.06990 1.53983 1.27264 1.20923 0.82157 0.79102 0.87921 1.90589 1.56961 1.50031 1.49923 1.21282 0.99912 0.97898 0.93085 1.21396 1.00653 0.96789 0.95426 1.22207 0.99552 0.99456 0.96851 1.21776 0.94359 0.93270 0.85559 1.86456 1.82929 1.39510 1.30075 1.21444 1.01418 0.97473 0.94132 1.21306 0.96653 0.97463 0.97460 1.44159 1.01788 1.69692 1.16249 1.19066 0.99803 1.31845 0.85098 0.92379 1.25512 0.98681 0.99758 0.98711 1.70088 1.25099 1.43855 1.18133 0.85987 0.79753 0.78660 0.79826 1.22164 1.22909 1.18291 1.20576 0.82622 0.95028 0.94609 0.94020 0.91336 0.93112 0.93556 0.92230 0.95280 0.92876 0.90903 0.92202 0.90384 0.93837 0.91341 0.75288 0.89358 0.91194 0.93016 0.91788 0.90092 0.91681 0.75679 0.91396 0.89873 0.90570 0.91111 0.94512 0.98986 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.48 71.98 0.61 -3.17 16 2 C -0.09 -3.17 0.77 -52.10 -0.04 -3.21 16 3 C -0.12 -3.97 7.99 71.98 0.58 -3.39 16 4 C -0.09 -2.67 4.70 30.64 0.14 -2.52 16 5 C -0.12 -3.79 5.04 30.68 0.15 -3.63 16 6 C 0.16 5.91 3.00 44.97 0.14 6.05 16 7 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 8 C 0.14 5.12 4.43 86.38 0.38 5.50 16 9 N -0.70 -25.99 3.92 -463.07 -1.82 -27.80 16 10 C 0.51 18.67 6.65 87.66 0.58 19.25 16 11 O -0.59 -24.59 16.64 -3.01 -0.05 -24.64 16 12 C -0.10 -3.03 2.55 -11.54 -0.03 -3.06 16 13 C -0.10 -3.11 5.19 30.60 0.16 -2.95 16 14 C -0.14 -3.45 5.55 30.59 0.17 -3.28 16 15 C 0.11 2.34 3.47 30.60 0.11 2.44 16 16 O -0.58 -11.95 13.32 -148.98 -1.98 -13.94 16 17 C -0.11 -2.36 5.57 30.60 0.17 -2.19 16 18 C -0.09 -2.27 5.02 30.59 0.15 -2.12 16 19 N -0.60 -26.07 2.41 -675.22 -1.63 -27.70 16 20 C -0.23 -10.98 6.91 84.03 0.58 -10.40 16 21 H 0.06 2.91 5.93 -2.91 -0.02 2.89 16 22 C -0.03 -1.55 5.05 84.86 0.43 -1.12 16 23 N -0.93 -50.22 11.11 21.65 0.24 -49.98 16 24 Si 0.93 42.14 29.57 68.60 2.03 44.17 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.26 -10.86 5.65 99.48 0.56 -10.30 16 28 C 0.20 8.67 3.93 86.36 0.34 9.01 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.74 5.99 -2.38 -0.01 1.73 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.91 6.35 -2.39 -0.02 1.90 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.77 7.39 -2.39 -0.02 1.75 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.41 16.20 7.23 -92.71 -0.67 15.53 16 42 H 0.09 2.65 7.95 -2.39 -0.02 2.63 16 43 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.05 1.81 6.69 -2.38 -0.02 1.79 16 45 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.39 4.77 9.08 -74.05 -0.67 4.10 16 49 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 52 H 0.07 1.85 7.95 -2.38 -0.02 1.83 16 53 H 0.25 13.32 8.31 -92.70 -0.77 12.55 16 54 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 55 H 0.05 2.58 6.18 -2.38 -0.01 2.56 16 Total: -1.00 -60.21 406.75 0.79 -59.41 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.62 Total: 39.27 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.62 Total: 1.21 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.20 Total: -105.49 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -2.03 Total: -38.57 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -60.21 0.79 -59.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089633873.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.194 kcal (2) G-P(sol) polarization free energy of solvation -60.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds