Wall clock time and date at job start Tue Mar 31 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.49429 * 2 1 4 4 C 1.53041 * 109.49566 * 120.06284 * 2 1 3 5 5 C 1.53043 * 109.53722 * 181.31962 * 4 2 1 6 6 C 1.53193 * 109.31295 * 298.63804 * 5 4 2 7 7 H 1.09002 * 109.58305 * 294.70491 * 6 5 4 8 8 C 1.52994 * 109.58864 * 174.42207 * 6 5 4 9 9 N 1.46499 * 109.47449 * 178.28510 * 8 6 5 10 10 C 1.34775 * 120.00517 * 177.30412 * 9 8 6 11 11 O 1.21293 * 119.99692 * 4.01248 * 10 9 8 12 12 C 1.50697 * 120.00298 * 184.01632 * 10 9 8 13 13 H 1.08999 * 108.68950 * 331.39401 * 12 10 9 14 14 C 1.54211 * 108.89270 * 213.05593 * 12 10 9 15 15 C 1.53459 * 111.69260 * 197.56525 * 14 12 10 16 16 C 1.51077 * 111.29164 * 319.20880 * 15 14 12 17 17 O 1.43395 * 107.45636 * 94.48918 * 16 15 14 18 18 C 1.36324 * 118.04114 * 276.34613 * 17 16 15 19 19 C 1.50971 * 108.81868 * 89.75669 * 12 10 9 20 20 N 1.46926 * 108.77659 * 54.63009 * 6 5 4 21 21 C 1.36944 * 120.62823 * 126.37053 * 20 6 5 22 22 H 1.07995 * 119.99888 * 331.66898 * 21 20 6 23 23 C 1.38808 * 119.99727 * 151.66430 * 21 20 6 24 24 N 1.31613 * 120.00596 * 338.57759 * 23 21 20 25 25 Si 1.86801 * 119.99823 * 158.57559 * 23 21 20 26 26 H 1.48503 * 109.47177 * 87.68925 * 25 23 21 27 27 H 1.48498 * 109.47225 * 207.68999 * 25 23 21 28 28 H 1.48504 * 109.47043 * 327.69230 * 25 23 21 29 29 C 1.46921 * 118.74101 * 306.39859 * 20 6 5 30 30 H 1.09007 * 109.47568 * 299.93425 * 1 2 3 31 31 H 1.09000 * 109.47107 * 59.94022 * 1 2 3 32 32 H 1.08999 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47062 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47153 * 300.06342 * 3 2 1 35 35 H 1.08996 * 109.46713 * 60.06652 * 3 2 1 36 36 H 1.08997 * 109.45993 * 61.30230 * 4 2 1 37 37 H 1.08997 * 109.46382 * 301.33829 * 4 2 1 38 38 H 1.08993 * 109.50233 * 178.68335 * 5 4 2 39 39 H 1.08999 * 109.52346 * 58.60424 * 5 4 2 40 40 H 1.09005 * 109.47415 * 58.28527 * 8 6 5 41 41 H 1.08999 * 109.47420 * 298.28838 * 8 6 5 42 42 H 0.97002 * 119.99615 * 357.30518 * 9 8 6 43 43 H 1.09001 * 109.04511 * 76.97374 * 14 12 10 44 44 H 1.09001 * 108.94225 * 318.08083 * 14 12 10 45 45 H 1.09006 * 109.11539 * 198.74560 * 15 14 12 46 46 H 1.09002 * 109.07086 * 79.64901 * 15 14 12 47 47 H 1.08997 * 109.86500 * 335.00337 * 16 15 14 48 48 H 1.09000 * 109.91852 * 214.00521 * 16 15 14 49 49 H 1.08998 * 109.15944 * 301.47330 * 18 17 16 50 50 H 1.09000 * 109.15763 * 182.28922 * 18 17 16 51 51 H 1.09000 * 109.51733 * 93.25799 * 19 12 10 52 52 H 1.09001 * 109.50822 * 333.16006 * 19 12 10 53 53 H 0.96993 * 120.00785 * 179.97438 * 24 23 21 54 54 H 1.09007 * 109.58362 * 293.81924 * 29 20 6 55 55 H 1.09001 * 109.70271 * 173.46696 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6946 1.2663 6 6 4.1053 -1.4265 0.0313 7 1 3.8397 -2.4821 0.0888 8 6 5.6272 -1.2832 -0.0312 9 7 6.1398 -2.0182 -1.1902 10 6 7.4560 -1.9887 -1.4787 11 8 8.2263 -1.4143 -0.7386 12 6 7.9706 -2.6692 -2.7209 13 1 7.3119 -3.5040 -2.9602 14 6 9.3844 -3.2175 -2.4406 15 6 10.1392 -3.5306 -3.7396 16 6 9.2314 -4.1778 -4.7591 17 8 8.7254 -3.1375 -5.6064 18 6 7.6372 -2.4360 -5.1796 19 6 7.9419 -1.6832 -3.8638 20 7 3.5046 -0.8294 -1.1693 21 6 4.2936 -0.3790 -2.1939 22 1 5.2950 -0.0293 -1.9907 23 6 3.8063 -0.3720 -3.4936 24 7 2.8006 -1.1542 -3.8236 25 14 4.5780 0.7476 -4.7744 26 1 5.7198 0.0499 -5.4184 27 1 3.5653 1.0939 -5.8038 28 1 5.0625 1.9891 -4.1192 29 6 2.0413 -0.7241 -1.2493 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1306 1.4419 -0.0005 34 1 1.6765 1.9566 -0.8893 35 1 1.6784 1.9559 0.8906 36 1 1.6967 -1.7569 1.2358 37 1 1.6581 -0.2239 2.1390 38 1 3.9334 -1.1889 2.1675 39 1 3.9163 0.3391 1.2544 40 1 6.0681 -1.6881 0.8798 41 1 5.8895 -0.2293 -0.1243 42 1 5.5319 -2.5261 -1.7500 43 1 9.3016 -4.1290 -1.8487 44 1 9.9458 -2.4751 -1.8733 45 1 10.9659 -4.2058 -3.5182 46 1 10.5366 -2.6036 -4.1529 47 1 8.4054 -4.6789 -4.2544 48 1 9.7940 -4.8982 -5.3530 49 1 6.8095 -3.1256 -5.0137 50 1 7.3530 -1.7153 -5.9464 51 1 8.9103 -1.1891 -3.9429 52 1 7.1670 -0.9384 -3.6826 53 1 2.4598 -1.1490 -4.7317 54 1 1.6053 -1.7220 -1.2974 55 1 1.7616 -0.1598 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089634848.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:31 Heat of formation + Delta-G solvation = -93.515608 kcal Electronic energy + Delta-G solvation = -32755.211987 eV Core-core repulsion = 28791.339161 eV Total energy + Delta-G solvation = -3963.872827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.48351 -40.41057 -39.69015 -36.67096 -35.61996 -34.98389 -33.83406 -33.17374 -31.75302 -29.23248 -28.03088 -27.89726 -27.29523 -26.83693 -24.92283 -23.86230 -22.98029 -21.87528 -21.69712 -20.26169 -19.46617 -18.63267 -17.86945 -17.46505 -17.28221 -17.12516 -16.61961 -16.40803 -15.98274 -15.65997 -15.57312 -15.28712 -15.13089 -14.87054 -14.71759 -14.49047 -14.27207 -13.92014 -13.75021 -13.42381 -13.34086 -13.11938 -13.02085 -12.90127 -12.78053 -12.65178 -12.49604 -12.49072 -12.24935 -12.14925 -11.92563 -11.88639 -11.77864 -11.65300 -11.58362 -11.35835 -11.28154 -10.99700 -10.87938 -10.70615 -10.43839 -10.34901 -9.83137 -8.54575 -7.80265 -5.18732 1.39393 1.47320 1.51834 1.71689 2.39482 2.52574 2.89013 3.34055 3.58366 3.61742 3.73308 3.85473 3.99004 4.00256 4.03083 4.10659 4.18756 4.22903 4.31864 4.40655 4.42678 4.52150 4.54260 4.56164 4.63673 4.67662 4.73309 4.77914 4.86156 4.89324 4.92273 4.94827 4.99291 5.05001 5.06741 5.09347 5.13154 5.15888 5.17206 5.24804 5.26513 5.37425 5.37860 5.48004 5.53472 5.58250 5.67459 5.73560 5.82730 5.86868 6.45896 6.61795 6.72919 7.23219 7.35847 7.94061 8.47030 9.24442 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.004163 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.703189 B = 6724.177903 C = 7977.976953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.161 3.839 7 H 0.031 0.969 8 C 0.140 3.860 9 N -0.694 5.694 10 C 0.510 3.490 11 O -0.594 6.594 12 C -0.096 4.096 13 H 0.094 0.906 14 C -0.101 4.101 15 C -0.143 4.143 16 C 0.058 3.942 17 O -0.396 6.396 18 C 0.087 3.913 19 C -0.145 4.145 20 N -0.593 5.593 21 C -0.228 4.228 22 H 0.058 0.942 23 C -0.023 4.023 24 N -0.917 5.917 25 Si 0.912 3.088 26 H -0.267 1.267 27 H -0.302 1.302 28 H -0.292 1.292 29 C 0.198 3.802 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.409 0.591 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.117 0.883 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.246 0.754 54 H -0.005 1.005 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -5.861 4.863 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.175 4.175 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.048 0.952 8 C 0.015 3.985 9 N -0.342 5.342 10 C 0.297 3.703 11 O -0.476 6.476 12 C -0.117 4.117 13 H 0.112 0.888 14 C -0.139 4.139 15 C -0.180 4.180 16 C -0.017 4.017 17 O -0.314 6.314 18 C 0.009 3.991 19 C -0.184 4.184 20 N -0.316 5.316 21 C -0.358 4.358 22 H 0.076 0.924 23 C -0.220 4.220 24 N -0.563 5.563 25 Si 0.743 3.257 26 H -0.193 1.193 27 H -0.229 1.229 28 H -0.219 1.219 29 C 0.072 3.928 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.246 0.754 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.093 0.907 52 H 0.073 0.927 53 H 0.055 0.945 54 H 0.013 0.987 55 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.476 -5.443 5.074 9.239 hybrid contribution -0.468 0.795 -1.093 1.431 sum 5.009 -4.648 3.980 7.908 Atomic orbital electron populations 1.21713 0.94209 1.01376 1.01371 1.21136 0.95318 0.95911 0.96911 1.21627 1.00781 0.95287 0.99834 1.21385 0.94807 0.99803 0.96824 1.21951 0.96454 1.00799 0.97190 1.20845 0.90085 0.95185 0.88360 0.95191 1.21233 0.93827 0.95601 0.87803 1.46026 1.07694 1.50446 1.30047 1.20997 0.82126 0.80253 0.86895 1.90595 1.57121 1.47546 1.52327 1.21205 0.99757 0.98615 0.92144 0.88821 1.21772 0.92551 1.01148 0.98455 1.21939 0.99308 1.02236 0.94545 1.22752 0.97234 0.89114 0.92627 1.86310 1.47298 1.49530 1.48305 1.21594 0.88101 0.94385 0.95013 1.22128 1.02589 0.98474 0.95168 1.44185 1.01760 1.69745 1.15952 1.19052 0.97845 1.33332 0.85614 0.92413 1.25183 0.99430 0.99600 0.97762 1.70147 1.29848 1.38273 1.18039 0.86156 0.78306 0.80593 0.80654 1.19315 1.22861 1.21888 1.20534 0.82582 0.95107 0.94583 0.91304 0.94024 0.92980 0.93558 0.95275 0.92182 0.92680 0.90867 0.90350 0.92280 0.91320 0.93945 0.75446 0.90478 0.92056 0.88307 0.91717 0.92003 0.86493 0.93986 0.89708 0.90666 0.92686 0.94485 0.98670 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.48 71.98 0.61 -3.12 16 2 C -0.09 -3.06 0.77 -52.11 -0.04 -3.10 16 3 C -0.12 -4.00 7.99 71.98 0.57 -3.43 16 4 C -0.09 -2.60 4.71 30.62 0.14 -2.46 16 5 C -0.12 -3.74 5.03 30.67 0.15 -3.58 16 6 C 0.16 5.82 2.98 44.97 0.13 5.96 16 7 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.14 5.08 4.41 86.38 0.38 5.46 16 9 N -0.69 -25.60 3.82 -463.06 -1.77 -27.37 16 10 C 0.51 18.74 6.54 87.66 0.57 19.32 16 11 O -0.59 -25.20 15.83 -3.07 -0.05 -25.25 16 12 C -0.10 -2.89 2.00 -11.79 -0.02 -2.91 16 13 H 0.09 2.59 6.58 -2.39 -0.02 2.57 16 14 C -0.10 -2.55 5.19 31.16 0.16 -2.38 16 15 C -0.14 -2.90 5.43 30.12 0.16 -2.74 16 16 C 0.06 1.17 6.48 71.36 0.46 1.64 16 17 O -0.40 -10.85 9.90 -97.26 -0.96 -11.82 16 18 C 0.09 2.65 6.39 72.54 0.46 3.12 16 19 C -0.15 -4.75 5.16 30.49 0.16 -4.59 16 20 N -0.59 -25.70 2.42 -675.26 -1.64 -27.34 16 21 C -0.23 -11.02 7.26 84.03 0.61 -10.41 16 22 H 0.06 2.93 5.77 -2.91 -0.02 2.91 16 23 C -0.02 -1.17 4.79 84.86 0.41 -0.77 16 24 N -0.92 -49.26 11.52 21.65 0.25 -49.02 16 25 Si 0.91 42.63 29.49 68.60 2.02 44.65 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 C 0.20 8.54 4.01 86.36 0.35 8.89 16 30 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.74 5.98 -2.39 -0.01 1.73 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.88 6.34 -2.39 -0.02 1.87 16 40 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.04 1.75 7.30 -2.39 -0.02 1.74 16 42 H 0.41 15.64 7.69 -92.71 -0.71 14.93 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.80 7.15 -2.39 -0.02 1.78 16 45 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 1.49 7.31 -2.39 -0.02 1.47 16 47 H 0.06 1.22 6.68 -2.39 -0.02 1.20 16 48 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 50 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 51 H 0.07 2.42 7.16 -2.39 -0.02 2.41 16 52 H 0.05 2.13 7.62 -2.39 -0.02 2.11 16 53 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 54 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 55 H 0.04 2.23 6.24 -2.39 -0.01 2.22 16 Total: -1.00 -59.24 401.86 3.28 -55.96 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.15 Total: 35.27 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.28 Total: 4.90 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.16 Total: -103.72 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.01 Total: -37.06 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.02 Total: 44.65 kcal Total: -59.24 3.28 -55.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089634848.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.557 kcal (2) G-P(sol) polarization free energy of solvation -59.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds