Wall clock time and date at job start Tue Mar 31 2020 21:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46893 * 2 1 4 4 C 1.53003 * 109.46932 * 119.99298 * 2 1 3 5 5 C 1.52998 * 109.47160 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46910 * 300.00235 * 5 4 2 7 7 C 1.52998 * 109.46910 * 180.02562 * 6 5 4 8 8 C 1.50708 * 109.47020 * 174.99828 * 7 6 5 9 9 O 1.21279 * 120.00093 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99938 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99848 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.44638 * 324.96547 * 11 10 8 13 13 C 1.53035 * 109.45813 * 84.93196 * 11 10 8 14 14 C 1.52764 * 109.37934 * 181.25842 * 13 11 10 15 15 N 1.46926 * 109.01135 * 305.58582 * 14 13 11 16 16 C 1.36928 * 120.63170 * 233.58503 * 15 14 13 17 17 H 1.08001 * 120.00114 * 151.80747 * 16 15 14 18 18 C 1.38812 * 120.00102 * 331.80110 * 16 15 14 19 19 N 1.31617 * 120.00308 * 335.56350 * 18 16 15 20 20 Si 1.86804 * 119.99777 * 155.28945 * 18 16 15 21 21 H 1.48503 * 109.46743 * 180.27744 * 20 18 16 22 22 H 1.48500 * 109.47225 * 300.27498 * 20 18 16 23 23 H 1.48501 * 109.47206 * 60.27771 * 20 18 16 24 24 C 1.46929 * 118.73483 * 53.31107 * 15 14 13 25 25 C 1.53042 * 109.45529 * 205.00076 * 11 10 8 26 26 H 1.08994 * 109.52585 * 298.57660 * 25 11 10 27 27 O 1.42896 * 109.49900 * 58.66643 * 25 11 10 28 28 C 1.53003 * 109.47400 * 59.99912 * 6 5 4 29 29 C 1.52988 * 109.47648 * 239.99593 * 2 1 3 30 30 H 1.08992 * 109.47495 * 300.00155 * 1 2 3 31 31 H 1.09001 * 109.47001 * 60.00697 * 1 2 3 32 32 H 1.09000 * 109.46540 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46886 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46728 * 299.99470 * 3 2 1 35 35 H 1.09002 * 109.46834 * 59.99263 * 3 2 1 36 36 H 1.09003 * 109.46817 * 60.00242 * 4 2 1 37 37 H 1.09002 * 109.47332 * 300.01066 * 4 2 1 38 38 H 1.08999 * 109.47049 * 180.02562 * 5 4 2 39 39 H 1.08994 * 109.47446 * 59.99817 * 5 4 2 40 40 H 1.09005 * 109.47123 * 299.99726 * 6 5 4 41 41 H 1.09003 * 109.47287 * 55.00299 * 7 6 5 42 42 H 1.08999 * 109.47369 * 294.99933 * 7 6 5 43 43 H 0.97003 * 119.99802 * 0.02562 * 10 8 7 44 44 H 1.08995 * 109.50055 * 301.33289 * 13 11 10 45 45 H 1.09004 * 109.50210 * 61.40501 * 13 11 10 46 46 H 1.09003 * 109.51000 * 185.70458 * 14 13 11 47 47 H 1.09005 * 109.43274 * 65.43079 * 14 13 11 48 48 H 0.97007 * 119.99706 * 353.96844 * 19 18 16 49 49 H 1.09001 * 109.58752 * 66.42659 * 24 15 14 50 50 H 1.08997 * 109.58400 * 186.71234 * 24 15 14 51 51 H 0.96697 * 113.99724 * 179.83580 * 27 25 11 52 52 H 1.08998 * 109.46500 * 59.99897 * 28 6 5 53 53 H 1.08996 * 109.47040 * 179.97438 * 28 6 5 54 54 H 1.08998 * 109.47411 * 300.00406 * 29 2 1 55 55 H 1.09001 * 109.47156 * 59.99805 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0006 7 6 5.6105 -1.4416 0.0012 8 6 6.1133 -2.2564 -1.1626 9 8 5.3256 -2.7846 -1.9184 10 7 7.4385 -2.3972 -1.3641 11 6 7.9273 -3.1888 -2.4958 12 1 7.2550 -4.0294 -2.6680 13 6 7.9771 -2.3109 -3.7483 14 6 8.4572 -3.1461 -4.9339 15 7 9.7380 -3.7770 -4.5876 16 6 10.8321 -3.6248 -5.3967 17 1 11.8256 -3.6692 -4.9755 18 6 10.6644 -3.4135 -6.7584 19 7 9.5654 -3.8210 -7.3571 20 14 11.9951 -2.5439 -7.7395 21 1 11.5735 -2.4377 -9.1594 22 1 12.2106 -1.1836 -7.1841 23 1 13.2589 -3.3191 -7.6549 24 6 9.8241 -4.5695 -3.3533 25 6 9.3303 -3.7138 -2.1825 26 1 10.0089 -2.8739 -2.0342 27 8 9.2882 -4.5084 -0.9955 28 6 3.5705 -0.7205 -1.2488 29 6 2.0402 -0.7213 -1.2491 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6765 1.9564 0.8900 36 1 1.6767 -1.7488 1.2494 37 1 1.6765 -0.2073 2.1393 38 1 3.9333 -1.2347 2.1396 39 1 3.9330 0.3071 1.2498 40 1 3.7175 -2.4694 0.0004 41 1 5.9734 -1.8762 0.9327 42 1 5.9739 -0.4179 -0.0879 43 1 8.0686 -1.9745 -0.7597 44 1 6.9820 -1.9185 -3.9573 45 1 8.6678 -1.4834 -3.5854 46 1 8.5905 -2.5016 -5.8029 47 1 7.7189 -3.9163 -5.1576 48 1 8.9123 -4.3452 -6.8677 49 1 9.1997 -5.4581 -3.4453 50 1 10.8587 -4.8661 -3.1810 51 1 10.1445 -4.8767 -0.7382 52 1 3.9336 0.3073 -1.2486 53 1 3.9346 -1.2339 -2.1387 54 1 1.6768 -1.7489 -1.2491 55 1 1.6768 -0.2075 -2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090857807.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:42 Heat of formation + Delta-G solvation = -125.820351 kcal Electronic energy + Delta-G solvation = -31010.395482 eV Core-core repulsion = 27045.121816 eV Total energy + Delta-G solvation = -3965.273665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.40735 -40.41009 -39.36629 -37.23357 -35.89542 -35.10679 -33.84553 -31.95192 -31.64469 -30.56550 -29.65179 -28.15950 -27.01497 -25.62343 -24.21807 -23.64790 -23.48293 -21.76888 -21.40246 -20.79262 -19.54741 -19.33379 -18.19116 -17.90016 -17.38839 -16.42493 -16.32746 -16.15410 -15.91379 -15.66270 -15.51256 -15.42702 -15.16184 -14.83056 -14.69752 -14.58675 -14.26809 -14.02598 -13.70434 -13.63993 -13.59197 -13.11927 -12.82649 -12.74919 -12.69831 -12.67154 -12.56384 -12.50309 -12.28655 -12.19560 -12.12937 -11.92510 -11.79907 -11.77020 -11.63954 -11.34081 -11.20839 -11.11522 -11.00163 -10.82642 -10.54567 -10.43410 -10.02768 -9.03655 -8.30237 -5.48048 1.58835 1.66391 1.72304 1.85049 2.19506 2.62034 3.00858 3.20352 3.47605 3.67819 3.71607 3.76827 3.80955 3.93593 3.95969 4.07503 4.12325 4.21382 4.23747 4.33110 4.38352 4.50048 4.53632 4.55629 4.63351 4.65834 4.69055 4.74551 4.79549 4.82490 4.86448 4.87484 4.87663 4.94765 4.99848 5.06762 5.08261 5.12028 5.15058 5.23171 5.24963 5.26541 5.27786 5.33454 5.48582 5.50046 5.52781 5.65472 5.72997 5.78471 6.31685 6.62849 6.77680 6.97036 7.35515 7.68989 8.13063 8.95311 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002350 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.225307 B =11910.157060 C =12835.733554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.109 4.109 6 C -0.066 4.066 7 C -0.127 4.127 8 C 0.504 3.496 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.172 3.828 12 H 0.052 0.948 13 C -0.123 4.123 14 C 0.159 3.841 15 N -0.611 5.611 16 C -0.357 4.357 17 H 0.062 0.938 18 C -0.077 4.077 19 N -0.943 5.943 20 Si 1.117 2.883 21 H -0.296 1.296 22 H -0.276 1.276 23 H -0.272 1.272 24 C 0.118 3.882 25 C 0.104 3.896 26 H 0.073 0.927 27 O -0.569 6.569 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.413 0.587 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.053 0.947 47 H -0.005 1.005 48 H 0.252 0.748 49 H 0.010 0.990 50 H 0.072 0.928 51 H 0.396 0.604 52 H 0.068 0.932 53 H 0.045 0.955 54 H 0.045 0.955 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 10.602 22.593 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.085 4.085 7 C -0.166 4.166 8 C 0.292 3.708 9 O -0.463 6.463 10 N -0.359 5.359 11 C 0.066 3.934 12 H 0.070 0.930 13 C -0.163 4.163 14 C 0.033 3.967 15 N -0.336 5.336 16 C -0.486 4.486 17 H 0.080 0.920 18 C -0.273 4.273 19 N -0.585 5.585 20 Si 0.941 3.059 21 H -0.222 1.222 22 H -0.202 1.202 23 H -0.198 1.198 24 C -0.008 4.008 25 C 0.043 3.957 26 H 0.091 0.909 27 O -0.376 6.376 28 C -0.156 4.156 29 C -0.142 4.142 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.250 0.750 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.028 0.972 50 H 0.091 0.909 51 H 0.246 0.754 52 H 0.086 0.914 53 H 0.064 0.936 54 H 0.063 0.937 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.127 10.965 20.575 25.834 hybrid contribution 0.264 -1.360 0.899 1.652 sum -10.863 9.605 21.474 25.911 Atomic orbital electron populations 1.21860 0.94435 1.01514 1.01990 1.20544 0.95360 0.95851 0.94700 1.21950 1.01585 0.94647 1.01718 1.21567 0.95501 1.00014 0.97247 1.21611 0.95554 1.01244 0.96264 1.20846 0.92497 0.99388 0.95772 1.21804 0.97199 1.01418 0.96227 1.21528 0.81727 0.80610 0.86908 1.90671 1.56103 1.50131 1.49383 1.45918 1.07445 1.52817 1.29744 1.20502 0.93880 0.92942 0.86058 0.93008 1.22126 1.00600 0.98725 0.94841 1.20669 0.86171 0.93870 0.96015 1.44283 1.08651 1.56722 1.23990 1.20258 0.87168 1.50318 0.90889 0.92016 1.27342 1.03664 1.00785 0.95531 1.70911 1.12948 1.36130 1.38475 0.82837 0.72749 0.76097 0.74203 1.22194 1.20153 1.19798 1.21699 0.99766 0.92630 0.86706 1.22258 0.95148 0.93411 0.84928 0.90938 1.86451 1.38247 1.70334 1.42553 1.21679 0.95745 1.00137 0.98047 1.21540 0.95389 0.99574 0.97722 0.91647 0.92958 0.93242 0.91885 0.93319 0.91794 0.92963 0.90578 0.90739 0.90280 0.93112 0.86520 0.86620 0.75032 0.92182 0.91058 0.92836 0.98654 0.93801 0.97196 0.90939 0.75398 0.91387 0.93637 0.93662 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.47 71.98 0.61 -1.36 16 2 C -0.06 -0.99 0.77 -52.18 -0.04 -1.03 16 3 C -0.14 -1.90 7.78 71.98 0.56 -1.34 16 4 C -0.11 -1.46 4.73 30.59 0.14 -1.32 16 5 C -0.11 -1.45 4.93 30.59 0.15 -1.30 16 6 C -0.07 -1.29 1.84 -10.79 -0.02 -1.31 16 7 C -0.13 -2.25 5.18 29.85 0.15 -2.10 16 8 C 0.50 14.25 7.51 87.66 0.66 14.91 16 9 O -0.58 -22.16 13.63 -3.03 -0.04 -22.20 16 10 N -0.71 -19.23 4.92 -442.39 -2.18 -21.41 16 11 C 0.17 6.07 2.12 45.02 0.10 6.16 16 12 H 0.05 2.21 7.58 -2.38 -0.02 2.19 16 13 C -0.12 -4.84 5.64 30.53 0.17 -4.67 16 14 C 0.16 7.86 4.66 86.22 0.40 8.26 16 15 N -0.61 -30.44 2.85 -699.90 -2.00 -32.44 16 16 C -0.36 -19.48 9.49 84.04 0.80 -18.69 16 17 H 0.06 3.26 7.94 -2.91 -0.02 3.24 16 18 C -0.08 -4.35 4.70 84.86 0.40 -3.95 16 19 N -0.94 -58.26 12.41 21.65 0.27 -57.99 16 20 Si 1.12 49.96 29.99 68.60 2.06 52.01 16 21 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.12 4.81 6.14 86.36 0.53 5.34 16 25 C 0.10 3.34 3.14 30.67 0.10 3.44 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 O -0.57 -15.33 13.16 -148.98 -1.96 -17.29 16 28 C -0.12 -2.69 4.67 30.61 0.14 -2.54 16 29 C -0.10 -2.17 4.73 30.60 0.14 -2.02 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.83 4.81 -2.39 -0.01 0.82 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 40 H 0.05 1.26 7.96 -2.38 -0.02 1.24 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.41 8.39 8.60 -92.71 -0.80 7.59 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 46 H 0.05 2.95 6.32 -2.39 -0.02 2.94 16 47 H 0.00 -0.24 7.86 -2.38 -0.02 -0.26 16 48 H 0.25 16.09 6.70 -92.70 -0.62 15.47 16 49 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 51 H 0.40 7.07 9.08 -74.06 -0.67 6.40 16 52 H 0.07 1.35 6.43 -2.39 -0.02 1.34 16 53 H 0.04 1.39 5.95 -2.39 -0.01 1.38 16 54 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 55 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.15 408.62 0.70 -72.45 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.45 Total: 30.38 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.00 Total: -3.52 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.90 Total: -111.84 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -2.00 Total: -39.49 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.06 Total: 52.01 kcal Total: -73.15 0.70 -72.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090857807.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.373 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds