Wall clock time and date at job start Tue Mar 31 2020 21:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.01722 * 2 1 4 4 C 1.50699 * 109.47081 * 58.60703 * 3 2 1 5 5 O 1.21278 * 120.00167 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00136 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63302 * 180.02562 * 6 4 3 8 8 C 1.53185 * 108.89593 * 126.46584 * 7 6 4 9 9 C 1.53037 * 109.31342 * 54.56056 * 8 7 6 10 10 N 1.46504 * 109.46198 * 178.63129 * 9 8 7 11 11 C 1.36939 * 120.00073 * 59.99773 * 10 9 8 12 12 H 1.08002 * 119.99776 * 326.29501 * 11 10 9 13 13 C 1.38816 * 120.00280 * 146.29089 * 11 10 9 14 14 N 1.31615 * 119.99521 * 337.24541 * 13 11 10 15 15 Si 1.86794 * 120.00080 * 157.23810 * 13 11 10 16 16 H 1.48504 * 109.46937 * 60.00257 * 15 13 11 17 17 H 1.48498 * 109.47040 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47321 * 300.00698 * 15 13 11 19 19 C 1.46496 * 120.00158 * 240.00582 * 10 9 8 20 20 C 1.52995 * 109.47526 * 84.40910 * 19 10 9 21 21 O 1.42901 * 109.47217 * 65.00104 * 20 19 10 22 22 C 1.53036 * 109.54072 * 298.63703 * 9 8 7 23 23 C 1.46964 * 120.65007 * 359.81695 * 6 4 3 24 24 C 1.54270 * 110.06947 * 121.41736 * 2 1 3 25 25 C 1.54885 * 104.19739 * 95.70088 * 24 2 1 26 26 C 1.54887 * 102.75135 * 37.93729 * 25 24 2 27 27 C 1.53874 * 110.03723 * 238.60701 * 2 1 3 28 28 H 1.08998 * 109.46549 * 60.70096 * 1 2 3 29 29 H 1.08998 * 109.47242 * 180.69874 * 1 2 3 30 30 H 1.08999 * 109.46988 * 300.70118 * 1 2 3 31 31 H 1.08997 * 109.47361 * 298.60719 * 3 2 1 32 32 H 1.09003 * 109.47191 * 178.60695 * 3 2 1 33 33 H 1.09005 * 109.58893 * 6.60206 * 7 6 4 34 34 H 1.09006 * 109.58790 * 246.32488 * 7 6 4 35 35 H 1.08996 * 109.50359 * 174.51761 * 8 7 6 36 36 H 1.09004 * 109.49521 * 294.57783 * 8 7 6 37 37 H 1.08997 * 109.46311 * 58.65852 * 9 8 7 38 38 H 0.97002 * 119.99980 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46972 * 204.41070 * 19 10 9 40 40 H 1.08999 * 109.47247 * 324.40439 * 19 10 9 41 41 H 1.08997 * 109.47252 * 185.00279 * 20 19 10 42 42 H 1.09001 * 109.47200 * 304.99783 * 20 19 10 43 43 H 0.96703 * 114.00355 * 180.02562 * 21 20 19 44 44 H 1.09003 * 109.50074 * 181.32026 * 22 9 8 45 45 H 1.09004 * 109.50099 * 301.41643 * 22 9 8 46 46 H 1.09005 * 109.46634 * 113.75025 * 23 6 4 47 47 H 1.08994 * 109.71226 * 353.46589 * 23 6 4 48 48 H 1.09006 * 110.48371 * 214.37785 * 24 2 1 49 49 H 1.08997 * 110.49064 * 337.01868 * 24 2 1 50 50 H 1.09004 * 110.75157 * 279.63010 * 25 24 2 51 51 H 1.08999 * 110.91506 * 156.33034 * 25 24 2 52 52 H 1.09000 * 110.48864 * 203.38524 * 26 25 24 53 53 H 1.09002 * 110.48223 * 80.73617 * 26 25 24 54 54 H 1.09007 * 110.02781 * 359.95516 * 27 2 1 55 55 H 1.08995 * 110.03626 * 121.33167 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 1.5303 2.1629 1.2128 5 8 0.8097 1.5866 1.9999 6 7 1.8637 3.4517 1.4234 7 6 1.3618 4.1720 2.6014 8 6 2.5491 4.7814 3.3534 9 6 3.3686 5.6444 2.3912 10 7 4.4865 6.2551 3.1148 11 6 5.4210 5.4626 3.7263 12 1 5.1275 4.5178 4.1595 13 6 6.7454 5.8735 3.7894 14 7 7.2047 6.7492 2.9209 15 14 7.8756 5.1836 5.1070 16 1 7.9642 3.7085 4.9603 17 1 9.2283 5.7783 4.9598 18 1 7.3325 5.5158 6.4486 19 6 4.6047 7.7136 3.1843 20 6 3.7463 8.2407 4.3358 21 8 4.2667 7.7597 5.5768 22 6 3.9115 4.7720 1.2571 23 6 2.7400 4.1623 0.4816 24 6 2.0594 -0.7553 1.2366 25 6 2.3299 -2.1897 0.7186 26 6 2.8885 -1.9397 -0.7042 27 6 2.0572 -0.7530 -1.2340 28 1 -0.3632 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 1.7158 1.9474 -0.9022 32 1 3.1434 1.4273 0.0250 33 1 0.8319 3.4791 3.2551 34 1 0.6845 4.9649 2.2838 35 1 2.1823 5.3988 4.1734 36 1 3.1761 3.9834 3.7512 37 1 2.7343 6.4272 1.9754 38 1 8.1303 7.0361 2.9647 39 1 5.6465 7.9861 3.3535 40 1 4.2626 8.1510 2.2463 41 1 3.7635 9.3305 4.3326 42 1 2.7205 7.8932 4.2129 43 1 3.7702 8.0549 6.3524 44 1 4.5144 5.3827 0.5850 45 1 4.5260 3.9741 1.6740 46 1 2.1768 4.9547 -0.0115 47 1 3.1197 3.4649 -0.2651 48 1 2.9819 -0.2993 1.5961 49 1 1.3074 -0.7701 2.0255 50 1 1.4052 -2.7653 0.6748 51 1 3.0687 -2.6951 1.3404 52 1 2.7415 -2.8187 -1.3318 53 1 3.9449 -1.6749 -0.6582 54 1 1.2230 -1.1192 -1.8325 55 1 2.6854 -0.0941 -1.8333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098358603.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:25 Heat of formation + Delta-G solvation = -96.757246 kcal Electronic energy + Delta-G solvation = -31759.126268 eV Core-core repulsion = 27795.112874 eV Total energy + Delta-G solvation = -3964.013395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.49937 -39.77064 -38.64157 -37.57041 -36.20011 -33.86837 -33.21304 -32.05850 -31.84596 -29.57883 -29.53675 -28.73344 -26.50762 -25.70217 -24.58307 -23.95884 -22.31621 -21.59515 -21.50637 -20.20483 -19.33322 -18.38597 -18.19838 -17.74586 -16.93211 -16.77451 -16.47746 -16.07059 -16.00048 -15.68992 -15.56451 -15.08410 -14.83060 -14.68836 -14.55610 -14.33018 -14.13512 -14.00776 -13.84077 -13.51501 -13.23878 -13.07602 -13.01272 -12.76153 -12.70080 -12.52056 -12.46777 -12.36852 -12.13957 -11.99535 -11.89215 -11.81273 -11.63523 -11.59449 -11.52366 -11.37465 -11.34867 -11.24794 -11.11377 -10.64302 -10.42105 -10.34324 -9.51796 -8.48189 -7.74634 -5.25244 1.42809 1.47117 1.53803 1.73260 2.13675 2.56820 3.35742 3.51697 3.58997 3.67968 3.78598 3.83619 3.90120 4.03082 4.20391 4.27820 4.34861 4.38154 4.39284 4.47853 4.52967 4.57396 4.58350 4.64034 4.66360 4.72803 4.73613 4.83227 4.84667 4.86632 4.87861 4.92439 4.95157 5.02466 5.07365 5.09954 5.16045 5.18032 5.19885 5.24383 5.28030 5.44975 5.47021 5.49430 5.54618 5.62008 5.65498 5.74651 5.76085 5.87412 6.54443 6.55263 7.19881 7.29094 7.30735 8.00480 8.46290 9.23142 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003104 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.045589 B = 9017.541083 C = 9962.807655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C -0.127 4.127 4 C 0.509 3.491 5 O -0.571 6.571 6 N -0.610 5.610 7 C 0.123 3.877 8 C -0.124 4.124 9 C 0.173 3.827 10 N -0.584 5.584 11 C -0.220 4.220 12 H 0.038 0.962 13 C -0.030 4.030 14 N -0.917 5.917 15 Si 0.936 3.064 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.291 1.291 19 C 0.135 3.865 20 C 0.067 3.933 21 O -0.577 6.577 22 C -0.126 4.126 23 C 0.116 3.884 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.246 0.754 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.374 0.626 44 H 0.060 0.940 45 H 0.035 0.965 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.076 0.924 53 H 0.063 0.937 54 H 0.076 0.924 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 -8.232 -10.258 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.046 4.046 3 C -0.166 4.166 4 C 0.299 3.701 5 O -0.451 6.451 6 N -0.343 5.343 7 C -0.001 4.001 8 C -0.164 4.164 9 C 0.066 3.934 10 N -0.304 5.304 11 C -0.351 4.351 12 H 0.056 0.944 13 C -0.226 4.226 14 N -0.563 5.563 15 Si 0.767 3.233 16 H -0.210 1.210 17 H -0.220 1.220 18 H -0.218 1.218 19 C 0.009 3.991 20 C -0.013 4.013 21 O -0.382 6.382 22 C -0.166 4.166 23 C -0.006 4.006 24 C -0.147 4.147 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.150 4.150 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.220 0.780 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.095 0.905 53 H 0.081 0.919 54 H 0.094 0.906 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.301 -8.726 -10.289 18.945 hybrid contribution 0.776 0.281 1.742 1.928 sum -12.524 -8.445 -8.547 17.356 Atomic orbital electron populations 1.22064 0.94178 1.01651 1.02275 1.20926 0.95961 0.92387 0.95365 1.21959 1.02299 0.96040 0.96309 1.21209 0.79904 0.80969 0.87999 1.90573 1.39314 1.66465 1.48773 1.48305 1.49099 1.11642 1.25267 1.21481 0.95478 0.95934 0.87163 1.22142 0.96357 0.99027 0.98844 1.20505 0.88704 0.93568 0.90586 1.43906 1.25955 1.00927 1.59576 1.18698 0.87270 1.02085 1.26998 0.94437 1.25330 0.97596 1.00515 0.99195 1.70054 1.14274 1.37023 1.34935 0.85835 0.78401 0.77792 0.81305 1.21028 1.21993 1.21759 1.21031 1.01071 0.83788 0.93251 1.22920 0.96703 0.95923 0.85737 1.86779 1.58150 1.76994 1.16306 1.22130 0.97156 0.99241 0.98063 1.21893 0.90413 0.97323 0.91008 1.22376 0.99370 0.95709 0.97263 1.22515 1.00821 0.96030 0.96913 1.22354 0.99387 0.98494 0.95775 1.22277 0.99911 0.96791 0.96015 0.92349 0.92808 0.92231 0.86585 0.88486 0.90910 0.89845 0.92011 0.95113 0.91414 0.94500 0.91336 0.93287 0.93678 0.94337 0.78033 0.92135 0.94591 0.89236 0.87955 0.93966 0.93040 0.91277 0.91953 0.90503 0.91863 0.90556 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.83 71.98 0.56 -2.49 16 2 C -0.05 -0.94 0.63 -51.46 -0.03 -0.97 16 3 C -0.13 -2.61 2.75 29.85 0.08 -2.53 16 4 C 0.51 14.26 7.16 87.66 0.63 14.89 16 5 O -0.57 -19.36 11.57 -3.02 -0.03 -19.40 16 6 N -0.61 -16.83 2.98 -818.89 -2.44 -19.27 16 7 C 0.12 3.58 6.43 86.36 0.55 4.14 16 8 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 9 C 0.17 6.43 2.59 45.02 0.12 6.54 16 10 N -0.58 -27.19 2.35 -677.90 -1.59 -28.78 16 11 C -0.22 -11.87 8.06 84.03 0.68 -11.20 16 12 H 0.04 2.15 6.87 -2.91 -0.02 2.13 16 13 C -0.03 -1.70 4.90 84.86 0.42 -1.28 16 14 N -0.92 -52.99 11.36 21.65 0.25 -52.74 16 15 Si 0.94 46.87 29.61 68.60 2.03 48.90 16 16 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 19 C 0.13 6.03 5.57 86.38 0.48 6.51 16 20 C 0.07 2.47 7.39 71.98 0.53 3.00 16 21 O -0.58 -23.67 13.40 -148.98 -2.00 -25.67 16 22 C -0.13 -4.36 5.31 30.66 0.16 -4.20 16 23 C 0.12 2.82 6.33 86.34 0.55 3.36 16 24 C -0.11 -2.68 4.74 31.67 0.15 -2.53 16 25 C -0.13 -2.41 6.91 31.88 0.22 -2.19 16 26 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 27 C -0.11 -1.74 6.11 31.32 0.19 -1.55 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.62 5.43 -2.39 -0.01 1.60 16 31 H 0.12 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.10 1.97 7.66 -2.39 -0.02 1.95 16 33 H 0.07 2.31 7.01 -2.38 -0.02 2.29 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.03 1.30 7.03 -2.38 -0.02 1.28 16 37 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 38 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 39 H 0.07 3.68 5.35 -2.38 -0.01 3.67 16 40 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.37 10.90 9.12 -74.05 -0.68 10.22 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.04 1.49 7.71 -2.38 -0.02 1.47 16 46 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.10 1.99 5.95 -2.39 -0.01 1.97 16 48 H 0.04 1.16 7.84 -2.38 -0.02 1.14 16 49 H 0.05 1.49 7.15 -2.39 -0.02 1.47 16 50 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 53 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 54 H 0.08 1.03 7.67 -2.38 -0.02 1.02 16 55 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 Total: -1.00 -68.96 409.76 2.06 -66.90 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.18 Total: 26.52 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.67 Total: 3.53 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -3.79 Total: -100.79 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.03 Total: -45.06 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -68.96 2.06 -66.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098358603.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.860 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds