Wall clock time and date at job start Tue Mar 31 2020 21:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 110.05822 * 2 1 4 4 C 1.54374 * 110.04886 * 238.52351 * 2 1 3 5 5 C 1.54886 * 104.19551 * 217.09437 * 4 2 1 6 6 C 1.54887 * 102.75225 * 37.97137 * 5 4 2 7 7 C 1.53882 * 110.02641 * 121.41651 * 2 1 3 8 8 H 1.09002 * 110.02520 * 238.61582 * 7 2 1 9 9 C 1.50693 * 110.03350 * 0.02562 * 7 2 1 10 10 O 1.21276 * 120.00246 * 90.37607 * 9 7 2 11 11 N 1.34785 * 119.99770 * 270.37713 * 9 7 2 12 12 C 1.46924 * 120.63221 * 355.52799 * 11 9 7 13 13 C 1.53189 * 108.77551 * 233.88819 * 12 11 9 14 14 C 1.53045 * 109.30951 * 305.36291 * 13 12 11 15 15 N 1.46505 * 109.45768 * 181.38885 * 14 13 12 16 16 C 1.36937 * 120.00042 * 299.93287 * 15 14 13 17 17 H 1.07995 * 119.99884 * 322.07308 * 16 15 14 18 18 C 1.38815 * 120.00092 * 142.06817 * 16 15 14 19 19 N 1.31622 * 119.99676 * 340.81083 * 18 16 15 20 20 Si 1.86794 * 119.99832 * 160.80393 * 18 16 15 21 21 H 1.48499 * 109.47313 * 60.00328 * 20 18 16 22 22 H 1.48504 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47573 * 300.00305 * 20 18 16 24 24 C 1.46501 * 120.00016 * 119.93034 * 15 14 13 25 25 C 1.53001 * 109.46948 * 85.46872 * 24 15 14 26 26 O 1.42899 * 109.47119 * 64.99972 * 25 24 15 27 27 C 1.53033 * 109.53604 * 61.36879 * 14 13 12 28 28 C 1.46927 * 120.62536 * 175.81330 * 11 9 7 29 29 H 1.08990 * 109.47350 * 300.91298 * 1 2 3 30 30 H 1.09010 * 109.46511 * 60.91113 * 1 2 3 31 31 H 1.08998 * 109.47124 * 180.90359 * 1 2 3 32 32 H 1.09001 * 109.47429 * 181.40892 * 3 2 1 33 33 H 1.08999 * 109.47274 * 301.41613 * 3 2 1 34 34 H 1.09004 * 109.46906 * 61.41456 * 3 2 1 35 35 H 1.08999 * 110.46232 * 98.42739 * 4 2 1 36 36 H 1.08994 * 110.62032 * 335.84213 * 4 2 1 37 37 H 1.09001 * 110.75944 * 279.65296 * 5 4 2 38 38 H 1.09005 * 110.91493 * 156.35742 * 5 4 2 39 39 H 1.09001 * 110.48947 * 203.37976 * 6 5 4 40 40 H 1.09001 * 110.48637 * 80.73753 * 6 5 4 41 41 H 1.08999 * 109.58368 * 353.67301 * 12 11 9 42 42 H 1.08994 * 109.58408 * 114.09485 * 12 11 9 43 43 H 1.09007 * 109.49657 * 185.41690 * 13 12 11 44 44 H 1.08996 * 109.49987 * 65.31517 * 13 12 11 45 45 H 1.08999 * 109.44803 * 301.35071 * 14 13 12 46 46 H 0.97003 * 119.99281 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.46946 * 205.46892 * 24 15 14 48 48 H 1.09002 * 109.46965 * 325.47590 * 24 15 14 49 49 H 1.08992 * 109.47164 * 185.00141 * 25 24 15 50 50 H 1.09004 * 109.47366 * 305.00087 * 25 24 15 51 51 H 0.96695 * 114.00053 * 180.02562 * 26 25 24 52 52 H 1.09006 * 109.49676 * 178.68147 * 27 14 13 53 53 H 1.09004 * 109.52550 * 58.60681 * 27 14 13 54 54 H 1.09003 * 109.58382 * 245.90271 * 28 11 9 55 55 H 1.08995 * 109.58901 * 6.18634 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7181 6 6 2.8881 -1.9407 0.7047 7 6 2.0570 -0.7536 1.2338 8 1 2.6859 -0.0951 1.8330 9 6 0.9036 -1.2597 2.0612 10 8 0.4444 -2.3623 1.8510 11 7 0.3824 -0.4869 3.0347 12 6 0.9889 0.8095 3.3667 13 6 1.2908 0.8426 4.8682 14 6 0.0122 0.5285 5.6485 15 7 0.2895 0.5918 7.0857 16 6 1.2265 -0.2392 7.6395 17 1 1.3193 -1.2570 7.2903 18 6 2.0570 0.2265 8.6495 19 7 2.2218 1.5210 8.8215 20 14 2.9405 -0.9839 9.7647 21 1 3.8228 -1.8559 8.9484 22 1 3.7591 -0.2384 10.7544 23 1 1.9417 -1.8196 10.4782 24 6 -0.4355 1.5443 7.9304 25 6 -1.7629 0.9255 8.3731 26 8 -1.5063 -0.2035 9.2107 27 6 -0.4774 -0.8751 5.2851 28 6 -0.7993 -0.9278 3.7883 29 1 -0.3633 0.5279 0.8816 30 1 -0.3633 0.4997 -0.8982 31 1 -0.3633 -1.0275 0.0162 32 1 3.1444 1.4261 -0.0253 33 1 1.6762 1.9622 -0.8770 34 1 1.7175 1.9471 0.9024 35 1 2.3305 -0.0558 -2.0258 36 1 1.3165 -1.4682 -1.5985 37 1 4.1716 -0.8294 -0.6742 38 1 3.5372 -2.3689 -1.3395 39 1 3.7642 -2.1029 1.3326 40 1 2.2783 -2.8429 0.6587 41 1 1.9146 0.9344 2.8051 42 1 0.2956 1.6122 3.1155 43 1 1.6518 1.8332 5.1450 44 1 2.0521 0.0987 5.1027 45 1 -0.7565 1.2584 5.3946 46 1 2.8025 1.8464 9.5271 47 1 0.1654 1.7819 8.8082 48 1 -0.6301 2.4559 7.3654 49 1 -2.3415 1.6648 8.9269 50 1 -2.3257 0.6066 7.4958 51 1 -2.3047 -0.6466 9.5290 52 1 -1.3749 -1.1073 5.8586 53 1 0.3002 -1.6033 5.5159 54 1 -1.6384 -0.2667 3.5715 55 1 -1.0548 -1.9482 3.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098454563.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:00 Heat of formation + Delta-G solvation = -95.342871 kcal Electronic energy + Delta-G solvation = -32373.622945 eV Core-core repulsion = 28409.670882 eV Total energy + Delta-G solvation = -3963.952063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.90128 -39.63688 -38.49003 -37.60071 -36.22340 -33.85084 -33.08704 -32.34107 -31.91417 -30.11766 -29.30261 -28.22157 -26.60435 -25.71781 -24.64690 -24.10073 -22.58148 -21.91306 -21.36870 -20.54674 -19.05597 -18.45986 -18.18460 -17.82553 -16.91661 -16.81119 -16.67525 -16.07945 -15.81545 -15.58420 -15.52319 -15.13902 -14.68140 -14.65847 -14.51596 -14.29570 -14.06067 -13.95721 -13.71757 -13.52650 -13.37476 -13.13617 -12.99558 -12.85568 -12.75663 -12.69079 -12.51406 -12.39378 -12.31780 -12.04674 -11.92788 -11.81835 -11.68737 -11.61854 -11.55940 -11.45129 -11.37603 -11.26328 -11.12519 -10.64672 -10.57321 -10.38149 -9.57129 -8.42511 -7.73392 -5.31002 1.42650 1.46350 1.52657 1.66823 2.08658 2.55909 3.36807 3.42348 3.52742 3.61541 3.64961 3.84191 3.86921 4.08386 4.16117 4.25124 4.32942 4.35119 4.42143 4.43176 4.45718 4.47796 4.50652 4.57791 4.65762 4.69994 4.75391 4.81610 4.83365 4.85495 4.90576 4.92533 4.94695 5.03715 5.04932 5.08935 5.11222 5.17234 5.18923 5.20508 5.23924 5.36812 5.38819 5.44803 5.49725 5.57590 5.62781 5.69735 5.75501 5.86721 6.49765 6.57063 7.20334 7.23688 7.30419 7.99308 8.47613 9.23280 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.003301 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.221383 B = 8479.091104 C = 9076.527255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.140 4.140 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.110 4.110 8 H 0.103 0.897 9 C 0.526 3.474 10 O -0.589 6.589 11 N -0.605 5.605 12 C 0.115 3.885 13 C -0.125 4.125 14 C 0.175 3.825 15 N -0.584 5.584 16 C -0.221 4.221 17 H 0.034 0.966 18 C -0.028 4.028 19 N -0.917 5.917 20 Si 0.938 3.062 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.290 1.290 24 C 0.139 3.861 25 C 0.066 3.934 26 O -0.577 6.577 27 C -0.123 4.123 28 C 0.121 3.879 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.246 0.754 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.045 0.955 50 H 0.038 0.962 51 H 0.373 0.627 52 H 0.062 0.938 53 H 0.029 0.971 54 H 0.086 0.914 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 2.700 -19.032 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.131 4.131 8 H 0.121 0.879 9 C 0.316 3.684 10 O -0.470 6.470 11 N -0.337 5.337 12 C -0.007 4.007 13 C -0.165 4.165 14 C 0.068 3.932 15 N -0.303 5.303 16 C -0.352 4.352 17 H 0.052 0.948 18 C -0.224 4.224 19 N -0.563 5.563 20 Si 0.768 3.232 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.013 3.987 25 C -0.013 4.013 26 O -0.382 6.382 27 C -0.163 4.163 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.220 0.780 52 H 0.081 0.919 53 H 0.048 0.952 54 H 0.104 0.896 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.578 2.422 -19.122 19.604 hybrid contribution -0.089 -1.120 1.678 2.019 sum -3.666 1.303 -17.444 17.872 Atomic orbital electron populations 1.22054 0.94886 1.01073 1.02549 1.21070 0.95116 0.96131 0.92508 1.21972 1.01638 0.93188 1.02882 1.22494 0.96980 0.98862 0.96534 1.22450 0.98086 1.00445 0.94226 1.22378 0.98596 0.96904 0.97837 1.22274 0.94650 0.99251 0.96895 0.87899 1.20907 0.84172 0.83756 0.79567 1.90608 1.63882 1.22008 1.70490 1.48233 1.30034 1.20570 1.34824 1.21993 0.99499 0.84117 0.95103 1.22134 0.99215 1.01036 0.94101 1.20492 0.94747 0.94216 0.83745 1.43849 1.42243 1.42489 1.01755 1.18647 1.09061 0.91254 1.16238 0.94789 1.25476 0.98212 0.96136 1.02577 1.70034 1.40100 1.12627 1.33514 0.85818 0.78114 0.79554 0.79696 1.20987 1.21862 1.21677 1.20982 0.90869 0.90386 0.96513 1.22931 0.98634 0.87531 0.92240 1.86778 1.35864 1.46305 1.69274 1.22142 1.00242 0.99305 0.94654 1.21521 0.87555 1.00874 0.90212 0.92582 0.90818 0.94424 0.91421 0.90940 0.92152 0.89328 0.92415 0.89904 0.90764 0.91512 0.92258 0.88267 0.89109 0.92072 0.94710 0.91346 0.94474 0.91790 0.93166 0.93650 0.94338 0.78041 0.91903 0.95186 0.89553 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.21 71.98 0.52 -2.46 16 2 C -0.05 -0.85 0.94 -51.42 -0.05 -0.90 16 3 C -0.14 -1.88 8.09 71.98 0.58 -1.29 16 4 C -0.11 -1.78 5.90 31.71 0.19 -1.59 16 5 C -0.11 -1.88 6.91 31.88 0.22 -1.66 16 6 C -0.12 -2.75 6.30 31.67 0.20 -2.55 16 7 C -0.11 -2.54 2.29 -10.82 -0.02 -2.56 16 8 H 0.10 2.21 5.45 -2.39 -0.01 2.20 16 9 C 0.53 15.93 4.61 87.65 0.40 16.33 16 10 O -0.59 -22.11 14.39 -3.02 -0.04 -22.15 16 11 N -0.60 -17.42 2.37 -818.93 -1.94 -19.36 16 12 C 0.12 2.94 5.95 86.36 0.51 3.45 16 13 C -0.12 -4.43 5.31 30.67 0.16 -4.27 16 14 C 0.17 6.56 2.60 45.02 0.12 6.68 16 15 N -0.58 -27.28 2.32 -677.87 -1.57 -28.85 16 16 C -0.22 -12.00 7.97 84.03 0.67 -11.33 16 17 H 0.03 1.97 6.88 -2.91 -0.02 1.95 16 18 C -0.03 -1.55 4.96 84.86 0.42 -1.13 16 19 N -0.92 -52.98 11.42 21.65 0.25 -52.73 16 20 Si 0.94 46.89 29.59 68.60 2.03 48.92 16 21 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 24 C 0.14 6.19 5.58 86.38 0.48 6.67 16 25 C 0.07 2.45 7.39 71.98 0.53 2.98 16 26 O -0.58 -23.65 13.35 -148.98 -1.99 -25.64 16 27 C -0.12 -4.46 5.30 30.67 0.16 -4.29 16 28 C 0.12 3.65 6.44 86.36 0.56 4.20 16 29 H 0.06 1.16 6.97 -2.39 -0.02 1.14 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 0.96 6.92 -2.39 -0.02 0.94 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.82 7.12 -2.38 -0.02 0.80 16 35 H 0.09 1.05 7.84 -2.39 -0.02 1.03 16 36 H 0.06 1.05 7.86 -2.39 -0.02 1.03 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.69 6.83 -2.39 -0.02 1.67 16 41 H 0.10 2.16 4.45 -2.39 -0.01 2.15 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.03 1.48 7.71 -2.39 -0.02 1.46 16 45 H 0.07 2.28 7.85 -2.39 -0.02 2.26 16 46 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 47 H 0.06 3.43 5.52 -2.39 -0.01 3.42 16 48 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.37 10.89 9.12 -74.06 -0.68 10.21 16 52 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 53 H 0.03 1.29 7.06 -2.39 -0.02 1.27 16 54 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 55 H 0.07 2.34 6.99 -2.39 -0.02 2.32 16 Total: -1.00 -70.36 407.12 2.58 -67.78 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.19 Total: 25.77 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.66 Total: 6.27 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.26 Total: -100.95 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.03 Total: -47.79 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -70.36 2.58 -67.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098454563.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.565 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds