Wall clock time and date at job start Tue Mar 31 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 110.05799 * 2 1 4 4 C 1.53880 * 110.03328 * 121.41473 * 2 1 3 5 5 C 1.54266 * 106.59794 * 119.28445 * 4 2 1 6 6 C 1.54895 * 104.31261 * 336.32873 * 5 4 2 7 7 H 1.08998 * 110.75460 * 279.68922 * 6 5 4 8 8 C 1.50702 * 110.75351 * 156.32537 * 6 5 4 9 9 O 1.21283 * 119.99372 * 262.70905 * 8 6 5 10 10 N 1.34776 * 120.00012 * 82.70979 * 8 6 5 11 11 C 1.46920 * 120.63341 * 5.56581 * 10 8 6 12 12 C 1.52760 * 109.01058 * 233.58502 * 11 10 8 13 13 C 1.53044 * 109.38130 * 305.59193 * 12 11 10 14 14 N 1.46503 * 109.46003 * 181.26170 * 13 12 11 15 15 C 1.36938 * 119.99747 * 299.93055 * 14 13 12 16 16 H 1.08001 * 119.99664 * 322.56239 * 15 14 13 17 17 C 1.38813 * 120.00286 * 142.56851 * 15 14 13 18 18 N 1.31620 * 120.00306 * 160.21443 * 17 15 14 19 19 Si 1.86797 * 119.99831 * 340.20973 * 17 15 14 20 20 H 1.48506 * 109.46983 * 93.09771 * 19 17 15 21 21 H 1.48491 * 109.47295 * 213.09846 * 19 17 15 22 22 H 1.48500 * 109.47284 * 333.09909 * 19 17 15 23 23 C 1.46499 * 120.00350 * 119.92809 * 14 13 12 24 24 C 1.53001 * 109.47124 * 84.36940 * 23 14 13 25 25 O 1.42901 * 109.46735 * 63.38616 * 24 23 14 26 26 C 1.53037 * 109.54064 * 61.23736 * 13 12 11 27 27 C 1.46930 * 120.62544 * 185.84959 * 10 8 6 28 28 C 1.54263 * 110.03567 * 238.58357 * 2 1 3 29 29 H 1.09001 * 109.47757 * 300.03554 * 1 2 3 30 30 H 1.09007 * 109.47373 * 60.03574 * 1 2 3 31 31 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47748 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47360 * 299.96434 * 3 2 1 34 34 H 1.09007 * 109.46783 * 59.95997 * 3 2 1 35 35 H 1.09002 * 110.02931 * 0.02562 * 4 2 1 36 36 H 1.08997 * 110.03185 * 238.57466 * 4 2 1 37 37 H 1.08996 * 110.48520 * 95.07305 * 5 4 2 38 38 H 1.08997 * 110.48560 * 217.58383 * 5 4 2 39 39 H 1.09002 * 109.58521 * 353.42341 * 11 10 8 40 40 H 1.09001 * 109.58503 * 113.84315 * 11 10 8 41 41 H 1.09002 * 109.56763 * 185.55345 * 12 11 10 42 42 H 1.09003 * 109.36210 * 65.49743 * 12 11 10 43 43 H 1.09004 * 109.44582 * 301.22043 * 13 12 11 44 44 H 0.96993 * 120.00087 * 179.97438 * 18 17 15 45 45 H 1.08997 * 109.47180 * 204.37163 * 23 14 13 46 46 H 1.09005 * 109.46978 * 324.37019 * 23 14 13 47 47 H 1.08998 * 109.46833 * 183.38375 * 24 23 14 48 48 H 1.08996 * 109.46930 * 303.38625 * 24 23 14 49 49 H 0.96699 * 113.99727 * 180.02562 * 25 24 23 50 50 H 1.09001 * 109.49711 * 178.68277 * 26 13 12 51 51 H 1.08999 * 109.52502 * 58.60273 * 26 13 12 52 52 H 1.09009 * 109.58435 * 246.15341 * 27 10 8 53 53 H 1.08998 * 109.58800 * 6.43151 * 27 10 8 54 54 H 1.08998 * 110.48889 * 23.00396 * 28 2 1 55 55 H 1.09003 * 110.48771 * 145.64638 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0570 -0.7535 1.2338 5 6 2.8874 -1.9406 0.7036 6 6 2.3289 -2.1936 -0.7189 7 1 1.4040 -2.7686 -0.6741 8 6 3.3519 -2.8910 -1.5780 9 8 4.0476 -2.2478 -2.3352 10 7 3.4938 -4.2293 -1.5049 11 6 2.5790 -5.0353 -0.6852 12 6 3.3983 -5.8943 0.2763 13 6 4.4185 -6.7133 -0.5178 14 7 5.1850 -7.5601 0.3997 15 6 5.9264 -6.9900 1.3999 16 1 6.4506 -6.0627 1.2219 17 6 6.0042 -7.6039 2.6425 18 7 6.9869 -7.3031 3.4648 19 14 4.7142 -8.8569 3.1476 20 1 5.1837 -10.2207 2.7940 21 1 4.4914 -8.7746 4.6134 22 1 3.4420 -8.5716 2.4368 23 6 5.1582 -9.0169 0.2472 24 6 6.1939 -9.4395 -0.7967 25 8 7.5025 -9.0994 -0.3340 26 6 5.3704 -5.7688 -1.2554 27 6 4.5700 -4.9091 -2.2386 28 6 2.0584 -0.7554 -1.2368 29 1 -0.3635 0.5144 0.8896 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 3.1445 1.4261 0.0005 33 1 1.6971 1.9546 -0.8903 34 1 1.6960 1.9549 0.8897 35 1 1.2228 -1.1196 1.8323 36 1 2.6866 -0.0953 1.8325 37 1 3.9439 -1.6767 0.6572 38 1 2.7418 -2.8190 1.3323 39 1 1.9222 -4.3773 -0.1161 40 1 1.9830 -5.6809 -1.3302 41 1 2.7353 -6.5674 0.8200 42 1 3.9205 -5.2485 0.9823 43 1 3.8968 -7.3405 -1.2406 44 1 7.0411 -7.7318 4.3331 45 1 5.3925 -9.4866 1.2024 46 1 4.1660 -9.3300 -0.0780 47 1 6.1326 -10.5164 -0.9540 48 1 5.9949 -8.9232 -1.7357 49 1 8.2109 -9.3386 -0.9472 50 1 6.1110 -6.3526 -1.8019 51 1 5.8745 -5.1242 -0.5353 52 1 4.1397 -5.5443 -3.0130 53 1 5.2250 -4.1678 -2.6964 54 1 1.3062 -0.7696 -2.0255 55 1 2.9811 -0.3000 -1.5966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098473893.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:19 Heat of formation + Delta-G solvation = -97.711926 kcal Electronic energy + Delta-G solvation = -31908.143585 eV Core-core repulsion = 27944.088793 eV Total energy + Delta-G solvation = -3964.054793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.57141 -39.78330 -38.85754 -37.70486 -36.30460 -34.01897 -33.47170 -32.36493 -31.89568 -29.91925 -29.55868 -28.10932 -26.90749 -25.83287 -24.59659 -24.10297 -23.08463 -22.22838 -21.24026 -19.70513 -19.63376 -18.53783 -18.35985 -18.02694 -17.16570 -16.94748 -16.36113 -16.28761 -15.95954 -15.42289 -15.35951 -15.06452 -14.80272 -14.58251 -14.53753 -14.46980 -14.41894 -14.15512 -14.03570 -13.83577 -13.51311 -13.32819 -13.14562 -12.95917 -12.82558 -12.56752 -12.49377 -12.36665 -12.22372 -12.12809 -11.99475 -11.85607 -11.69024 -11.62652 -11.43218 -11.39667 -11.32920 -11.28806 -11.19448 -10.71859 -10.64127 -10.48291 -9.60630 -8.64860 -8.04034 -5.42254 1.34235 1.43007 1.54056 1.59537 2.07152 2.51867 3.11873 3.34368 3.42414 3.55111 3.70948 3.74203 3.88818 4.04739 4.12580 4.23896 4.25851 4.30538 4.34128 4.39204 4.42792 4.45812 4.50058 4.54090 4.59612 4.62849 4.65905 4.68011 4.76257 4.79014 4.84401 4.86256 4.88568 4.90876 5.00224 5.04472 5.07754 5.08282 5.13322 5.15646 5.19857 5.25021 5.32348 5.42032 5.45880 5.46135 5.58829 5.61466 5.65721 6.07699 6.31017 6.46565 7.08968 7.18765 7.19641 7.78168 8.15520 9.17187 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003238 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.410690 B = 8646.102398 C = 9535.009294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.108 4.108 7 H 0.125 0.875 8 C 0.516 3.484 9 O -0.589 6.589 10 N -0.607 5.607 11 C 0.113 3.887 12 C -0.136 4.136 13 C 0.176 3.824 14 N -0.602 5.602 15 C -0.210 4.210 16 H 0.025 0.975 17 C -0.029 4.029 18 N -0.964 5.964 19 Si 0.946 3.054 20 H -0.285 1.285 21 H -0.320 1.320 22 H -0.242 1.242 23 C 0.115 3.885 24 C 0.061 3.939 25 O -0.580 6.580 26 C -0.125 4.125 27 C 0.122 3.878 28 C -0.095 4.095 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.088 0.912 44 H 0.254 0.746 45 H 0.036 0.964 46 H 0.089 0.911 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.376 0.624 50 H 0.063 0.937 51 H 0.024 0.976 52 H 0.092 0.908 53 H 0.066 0.934 54 H 0.077 0.923 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 6.836 -11.321 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.129 4.129 7 H 0.143 0.857 8 C 0.306 3.694 9 O -0.470 6.470 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.176 4.176 13 C 0.070 3.930 14 N -0.324 5.324 15 C -0.340 4.340 16 H 0.042 0.958 17 C -0.223 4.223 18 N -0.610 5.610 19 Si 0.776 3.224 20 H -0.214 1.214 21 H -0.250 1.250 22 H -0.165 1.165 23 C -0.009 4.009 24 C -0.018 4.018 25 O -0.385 6.385 26 C -0.165 4.165 27 C -0.001 4.001 28 C -0.133 4.133 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.107 0.893 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.223 0.777 50 H 0.082 0.918 51 H 0.043 0.957 52 H 0.110 0.890 53 H 0.085 0.915 54 H 0.095 0.905 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.273 7.348 -11.073 21.793 hybrid contribution 1.170 -0.860 0.425 1.513 sum -16.103 6.487 -10.648 20.366 Atomic orbital electron populations 1.21894 0.92616 1.02411 1.02260 1.21167 0.96709 0.95156 0.93682 1.21907 1.00188 0.95240 1.02281 1.22287 0.99528 0.95664 0.97270 1.22261 0.98893 0.99787 0.93856 1.22395 0.97931 0.97688 0.94846 0.85688 1.21101 0.84375 0.81752 0.82164 1.90623 1.49040 1.65815 1.41568 1.48260 1.31530 1.06311 1.47742 1.21916 0.91256 0.94483 0.93252 1.22169 0.98233 0.98802 0.98368 1.20548 0.90415 0.91114 0.90887 1.44164 1.53810 1.00785 1.33644 1.18216 1.20108 1.06465 0.89229 0.95776 1.26004 0.98953 1.00990 0.96312 1.70023 1.32626 1.47914 1.10443 0.85853 0.82420 0.78906 0.75186 1.21353 1.25002 1.16521 1.21605 0.97163 0.84700 0.97479 1.22900 0.83911 0.97755 0.97268 1.86847 1.16643 1.85973 1.49002 1.22138 0.98701 0.98040 0.97582 1.21532 0.89148 0.95483 0.93966 1.22426 1.00999 0.92258 0.97587 0.91852 0.92211 0.91867 0.93959 0.92194 0.91609 0.89715 0.91687 0.94129 0.90682 0.87878 0.88351 0.90724 0.94285 0.89440 0.93681 0.94635 0.89324 0.92716 0.93005 0.77744 0.91817 0.95747 0.89001 0.91505 0.90461 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.14 71.98 0.59 -1.10 16 2 C -0.07 -1.13 0.94 -51.46 -0.05 -1.18 16 3 C -0.14 -2.30 8.15 71.98 0.59 -1.71 16 4 C -0.11 -2.03 6.11 31.32 0.19 -1.83 16 5 C -0.11 -2.60 6.16 31.67 0.19 -2.40 16 6 C -0.11 -2.39 2.27 -10.13 -0.02 -2.41 16 7 H 0.13 2.04 6.64 -2.39 -0.02 2.02 16 8 C 0.52 15.38 6.94 87.66 0.61 15.99 16 9 O -0.59 -22.13 15.18 -3.04 -0.05 -22.18 16 10 N -0.61 -16.68 2.98 -819.74 -2.44 -19.12 16 11 C 0.11 2.50 6.27 86.22 0.54 3.04 16 12 C -0.14 -4.22 5.29 30.53 0.16 -4.06 16 13 C 0.18 5.95 2.59 45.02 0.12 6.06 16 14 N -0.60 -26.01 1.97 -677.87 -1.34 -27.35 16 15 C -0.21 -11.67 8.46 84.03 0.71 -10.96 16 16 H 0.02 1.58 7.03 -2.91 -0.02 1.56 16 17 C -0.03 -1.68 5.32 84.86 0.45 -1.23 16 18 N -0.96 -62.50 13.97 21.65 0.30 -62.20 16 19 Si 0.95 45.95 24.94 68.60 1.71 47.66 16 20 H -0.29 -13.54 6.60 99.48 0.66 -12.89 16 21 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 22 H -0.24 -10.39 7.11 99.48 0.71 -9.69 16 23 C 0.12 4.46 4.61 86.38 0.40 4.86 16 24 C 0.06 2.04 7.39 71.98 0.53 2.57 16 25 O -0.58 -23.53 13.33 -148.98 -1.99 -25.52 16 26 C -0.12 -4.36 5.30 30.67 0.16 -4.20 16 27 C 0.12 3.52 6.42 86.36 0.55 4.08 16 28 C -0.09 -2.00 5.15 31.79 0.16 -1.84 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 36 H 0.06 1.24 7.67 -2.39 -0.02 1.22 16 37 H 0.04 1.19 8.04 -2.39 -0.02 1.17 16 38 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 39 H 0.10 1.84 5.19 -2.39 -0.01 1.83 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.52 7.71 -2.39 -0.02 1.50 16 43 H 0.09 2.37 7.87 -2.38 -0.02 2.35 16 44 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.04 1.61 3.29 -2.39 -0.01 1.61 16 46 H 0.09 2.71 8.04 -2.38 -0.02 2.69 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.38 10.94 9.12 -74.06 -0.68 10.27 16 50 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.02 1.07 7.06 -2.39 -0.02 1.05 16 52 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 53 H 0.07 2.19 7.04 -2.39 -0.02 2.17 16 54 H 0.08 1.44 7.84 -2.39 -0.02 1.42 16 55 H 0.05 1.49 6.98 -2.39 -0.02 1.48 16 Total: -1.00 -79.16 409.70 2.22 -76.94 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.13 Total: 28.10 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.89 Total: 3.66 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.48 Total: -108.67 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.03 Total: -47.70 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.71 Total: 47.66 kcal Total: -79.16 2.22 -76.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098473893.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.777 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds