Wall clock time and date at job start Tue Mar 31 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.52560 * 2 1 4 4 C 1.53043 * 109.49498 * 239.91811 * 2 1 3 5 5 C 1.53039 * 109.53889 * 301.41476 * 4 2 1 6 6 C 1.53195 * 109.31311 * 298.63453 * 5 4 2 7 7 H 1.08999 * 109.70944 * 294.78206 * 6 5 4 8 8 C 1.52996 * 109.58579 * 174.42097 * 6 5 4 9 9 N 1.46503 * 109.47134 * 180.57712 * 8 6 5 10 10 C 1.34771 * 120.00161 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00037 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00075 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46930 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.55065 * 307.87395 * 14 13 12 16 16 C 1.54998 * 110.61674 * 184.99748 * 14 13 12 17 17 C 1.54806 * 102.09287 * 204.47625 * 16 14 13 18 18 C 1.54103 * 104.18734 * 20.87700 * 17 16 14 19 19 O 1.43742 * 107.29273 * 2.03470 * 18 17 16 20 20 N 1.46936 * 108.77244 * 54.63718 * 6 5 4 21 21 C 1.36936 * 120.62993 * 126.36852 * 20 6 5 22 22 H 1.08002 * 119.99860 * 328.73197 * 21 20 6 23 23 C 1.38809 * 120.00090 * 148.73009 * 21 20 6 24 24 N 1.31623 * 120.00215 * 162.61254 * 23 21 20 25 25 Si 1.86797 * 119.99841 * 342.62043 * 23 21 20 26 26 H 1.48499 * 109.47441 * 89.96590 * 25 23 21 27 27 H 1.48506 * 109.47324 * 209.96519 * 25 23 21 28 28 H 1.48503 * 109.47481 * 329.96476 * 25 23 21 29 29 C 1.46926 * 118.73654 * 306.39100 * 20 6 5 30 30 H 1.08993 * 109.47236 * 299.92393 * 1 2 3 31 31 H 1.08998 * 109.46718 * 59.91634 * 1 2 3 32 32 H 1.09000 * 109.46957 * 179.91550 * 1 2 3 33 33 H 1.08996 * 109.47193 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47147 * 300.08192 * 3 2 1 35 35 H 1.09002 * 109.46758 * 60.07726 * 3 2 1 36 36 H 1.08999 * 109.45949 * 61.43903 * 4 2 1 37 37 H 1.09004 * 109.45390 * 181.39376 * 4 2 1 38 38 H 1.09003 * 109.49646 * 178.68794 * 5 4 2 39 39 H 1.08994 * 109.50110 * 58.58806 * 5 4 2 40 40 H 1.08994 * 109.47214 * 60.58148 * 8 6 5 41 41 H 1.09001 * 109.47106 * 300.57837 * 8 6 5 42 42 H 0.97002 * 119.99718 * 0.02562 * 9 8 6 43 43 H 1.08999 * 109.47365 * 60.00123 * 12 10 9 44 44 H 1.09001 * 109.47056 * 299.99752 * 12 10 9 45 45 H 1.08999 * 109.47188 * 59.99698 * 13 12 10 46 46 H 1.09001 * 109.46723 * 299.99639 * 13 12 10 47 47 H 1.09000 * 110.90724 * 86.27528 * 16 14 13 48 48 H 1.09004 * 110.93702 * 322.68660 * 16 14 13 49 49 H 1.08999 * 110.48860 * 262.20539 * 17 16 14 50 50 H 1.08997 * 110.60149 * 139.60985 * 17 16 14 51 51 H 1.09004 * 109.87362 * 121.45746 * 18 17 16 52 52 H 1.08997 * 109.88203 * 242.60522 * 18 17 16 53 53 H 0.97000 * 120.00164 * 180.02562 * 24 23 21 54 54 H 1.09005 * 109.58098 * 173.39981 * 29 20 6 55 55 H 1.09003 * 109.58328 * 293.67331 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 1.5030 -2.1558 -1.2660 6 6 2.0140 -2.9041 -0.0308 7 1 3.0978 -3.0065 -0.0853 8 6 1.3702 -4.2906 0.0317 9 7 1.8500 -4.9986 1.2211 10 6 1.4151 -6.2470 1.4835 11 8 0.6268 -6.7844 0.7347 12 6 1.9082 -6.9751 2.7074 13 6 1.2655 -8.3622 2.7691 14 6 1.7666 -9.1017 4.0113 15 1 2.8560 -9.0938 4.0477 16 6 1.2302 -10.5557 4.0344 17 6 1.2740 -10.8935 5.5445 18 6 1.2908 -9.5179 6.2390 19 8 1.2104 -8.5184 5.2091 20 7 1.6515 -2.1381 1.1696 21 6 0.9630 -2.7311 2.1941 22 1 0.2632 -3.5267 1.9851 23 6 1.1647 -2.3098 3.5012 24 7 0.2879 -2.6156 4.4340 25 14 2.6804 -1.3085 3.9364 26 1 2.3807 0.1373 3.7787 27 1 3.0679 -1.5830 5.3435 28 1 3.7978 -1.6838 3.0331 29 6 2.0413 -0.7238 1.2495 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0005 34 1 1.6774 1.9566 -0.8892 35 1 1.6797 1.9557 0.8907 36 1 1.6988 -0.1958 -2.1389 37 1 3.1306 -0.7444 -1.2353 38 1 1.8481 -2.6629 -2.1671 39 1 0.4133 -2.1355 -1.2541 40 1 1.6383 -4.8562 -0.8606 41 1 0.2865 -4.1860 0.0836 42 1 2.4808 -4.5689 1.8198 43 1 1.6393 -6.4096 3.5996 44 1 2.9920 -7.0792 2.6561 45 1 1.5347 -8.9275 1.8769 46 1 0.1816 -8.2584 2.8202 47 1 1.8827 -11.2201 3.4681 48 1 0.2091 -10.6002 3.6553 49 1 2.1782 -11.4529 5.7843 50 1 0.3886 -11.4578 5.8371 51 1 0.4348 -9.4302 6.9082 52 1 2.2169 -9.3976 6.8009 53 1 0.4286 -2.3209 5.3474 54 1 1.6007 -0.2731 2.1389 55 1 3.1274 -0.6465 1.3006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098911263.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:35 Heat of formation + Delta-G solvation = -98.443059 kcal Electronic energy + Delta-G solvation = -31478.801670 eV Core-core repulsion = 27514.715173 eV Total energy + Delta-G solvation = -3964.086497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.00607 -40.41310 -39.89471 -36.71423 -34.95425 -34.52624 -33.69911 -32.94992 -32.49581 -30.00429 -28.60659 -28.10363 -27.28056 -25.76244 -24.60017 -23.89681 -22.35670 -21.96368 -21.61632 -20.89553 -19.89037 -18.50676 -17.70650 -17.62754 -17.25743 -16.74532 -16.69782 -16.45410 -16.29696 -15.73903 -15.56512 -15.31011 -14.98315 -14.76214 -14.62826 -14.37452 -14.28885 -14.13360 -13.85964 -13.71800 -13.33128 -13.05672 -12.89489 -12.81875 -12.74582 -12.71381 -12.60398 -12.42487 -12.37071 -12.19882 -12.10976 -11.88196 -11.83662 -11.78021 -11.53253 -11.51327 -11.37766 -11.12291 -11.01610 -10.67139 -10.57554 -10.56113 -9.78862 -8.72438 -8.04544 -5.40482 1.33907 1.42934 1.51359 1.80314 2.47340 2.49987 2.97628 3.12195 3.35359 3.65011 3.76401 3.87917 3.94021 3.95647 4.05206 4.05617 4.12948 4.20503 4.25075 4.35120 4.39950 4.44983 4.49369 4.55391 4.58744 4.69756 4.74494 4.76940 4.83620 4.85073 4.86291 4.88568 4.94995 4.95469 4.97221 5.03028 5.07868 5.09205 5.11157 5.15081 5.18381 5.22268 5.27811 5.29541 5.44042 5.47845 5.53659 5.71103 5.74713 5.99628 6.07327 6.30116 6.77312 7.00597 7.42749 7.72002 8.13108 9.14229 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003082 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.947693 B = 9082.318395 C =10273.708847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.091 4.091 5 C -0.127 4.127 6 C 0.163 3.837 7 H 0.053 0.947 8 C 0.139 3.861 9 N -0.696 5.696 10 C 0.506 3.494 11 O -0.598 6.598 12 C -0.131 4.131 13 C -0.086 4.086 14 C 0.072 3.928 15 H 0.087 0.913 16 C -0.148 4.148 17 C -0.148 4.148 18 C 0.034 3.966 19 O -0.408 6.408 20 N -0.610 5.610 21 C -0.220 4.220 22 H 0.056 0.944 23 C -0.025 4.025 24 N -0.956 5.956 25 Si 0.934 3.066 26 H -0.287 1.287 27 H -0.322 1.322 28 H -0.253 1.253 29 C 0.134 3.866 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.409 0.591 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.103 0.897 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.066 0.934 53 H 0.256 0.744 54 H 0.041 0.959 55 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.691 -7.811 -6.477 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.128 4.128 5 C -0.166 4.166 6 C 0.058 3.942 7 H 0.070 0.930 8 C 0.015 3.985 9 N -0.345 5.345 10 C 0.294 3.706 11 O -0.481 6.481 12 C -0.171 4.171 13 C -0.124 4.124 14 C 0.015 3.985 15 H 0.105 0.895 16 C -0.185 4.185 17 C -0.186 4.186 18 C -0.042 4.042 19 O -0.329 6.329 20 N -0.335 5.335 21 C -0.350 4.350 22 H 0.074 0.926 23 C -0.220 4.220 24 N -0.603 5.603 25 Si 0.765 3.235 26 H -0.215 1.215 27 H -0.251 1.251 28 H -0.177 1.177 29 C 0.009 3.991 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.135 0.865 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.121 0.879 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.099 0.901 52 H 0.084 0.916 53 H 0.065 0.935 54 H 0.059 0.941 55 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.037 -7.963 -6.844 13.223 hybrid contribution 0.293 0.816 1.505 1.736 sum 8.330 -7.147 -5.340 12.206 Atomic orbital electron populations 1.21661 0.95097 1.01054 1.00087 1.21018 0.95778 0.95640 0.96142 1.21788 1.01122 0.94500 1.01848 1.21409 1.00309 0.94570 0.96511 1.21966 1.00914 0.96503 0.97211 1.20954 0.96894 0.89061 0.87281 0.92967 1.21228 0.97792 0.92133 0.87374 1.46005 1.46804 1.14565 1.27170 1.21054 0.80587 0.81870 0.87052 1.90586 1.36925 1.68710 1.51873 1.21588 1.03191 0.96970 0.95323 1.21276 1.00081 0.93978 0.97096 1.23342 0.98099 0.92415 0.84638 0.89534 1.23169 1.02625 0.95456 0.97268 1.22925 1.04390 0.96837 0.94403 1.23346 1.02133 0.87694 0.91064 1.88966 1.83530 1.39021 1.21358 1.44463 1.65975 1.05713 1.17385 1.18671 1.15014 1.16432 0.84855 0.92621 1.25811 0.99832 1.00477 0.95848 1.69959 1.36628 1.51395 1.02296 0.86125 0.83347 0.78637 0.75420 1.21489 1.25143 1.17659 1.21462 0.96395 0.84333 0.96889 0.95443 0.91660 0.93771 0.92061 0.90741 0.94058 0.90299 0.91518 0.89567 0.92611 0.90595 0.94888 0.75498 0.90374 0.86538 0.88905 0.93395 0.87867 0.91238 0.88695 0.89615 0.90106 0.91620 0.93542 0.94090 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 7.99 71.98 0.58 -3.49 16 2 C -0.08 -2.60 0.77 -52.10 -0.04 -2.64 16 3 C -0.13 -3.45 8.48 71.98 0.61 -2.84 16 4 C -0.09 -2.30 4.71 30.62 0.14 -2.15 16 5 C -0.13 -3.55 5.03 30.67 0.15 -3.39 16 6 C 0.16 5.59 3.01 44.97 0.14 5.73 16 7 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 8 C 0.14 5.15 4.43 86.38 0.38 5.53 16 9 N -0.70 -27.07 3.84 -463.07 -1.78 -28.84 16 10 C 0.51 20.10 7.83 87.66 0.69 20.79 16 11 O -0.60 -26.96 15.98 -3.03 -0.05 -27.01 16 12 C -0.13 -4.34 5.65 29.85 0.17 -4.17 16 13 C -0.09 -2.58 4.26 30.60 0.13 -2.45 16 14 C 0.07 1.79 3.29 31.28 0.10 1.90 16 15 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 16 C -0.15 -2.79 6.59 31.89 0.21 -2.58 16 17 C -0.15 -2.41 7.01 31.58 0.22 -2.19 16 18 C 0.03 0.76 7.70 72.36 0.56 1.32 16 19 O -0.41 -12.82 11.08 -148.98 -1.65 -14.47 16 20 N -0.61 -25.73 2.15 -675.21 -1.45 -27.18 16 21 C -0.22 -11.39 7.41 84.03 0.62 -10.77 16 22 H 0.06 3.31 6.06 -2.91 -0.02 3.29 16 23 C -0.02 -1.39 5.26 84.86 0.45 -0.94 16 24 N -0.96 -59.18 13.97 21.65 0.30 -58.88 16 25 Si 0.93 44.91 24.33 68.60 1.67 46.57 16 26 H -0.29 -13.60 6.57 99.48 0.65 -12.94 16 27 H -0.32 -16.21 7.11 99.48 0.71 -15.51 16 28 H -0.25 -11.17 6.71 99.48 0.67 -10.50 16 29 C 0.13 5.28 2.88 86.36 0.25 5.53 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.70 5.97 -2.39 -0.01 1.68 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.74 6.33 -2.39 -0.02 1.73 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.03 1.45 7.42 -2.39 -0.02 1.43 16 42 H 0.41 16.05 7.38 -92.71 -0.68 15.36 16 43 H 0.08 3.05 8.06 -2.39 -0.02 3.03 16 44 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 46 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 47 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.44 8.06 -2.38 -0.02 1.43 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 53 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 54 H 0.04 1.88 4.73 -2.38 -0.01 1.86 16 55 H 0.03 1.11 7.02 -2.39 -0.02 1.10 16 Total: -1.00 -70.84 408.00 2.47 -68.37 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.07 Total: 38.26 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.36 Total: 3.17 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -2.93 Total: -114.90 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.70 Total: -41.48 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.57 kcal Total: -70.84 2.47 -68.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098911263.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.072 kcal (2) G-P(sol) polarization free energy of solvation -70.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds