Wall clock time and date at job start Tue Mar 31 2020 21:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.52504 * 2 1 4 4 C 1.53036 * 109.50197 * 239.91745 * 2 1 3 5 5 C 1.53039 * 109.54428 * 178.68240 * 4 2 1 6 6 C 1.53201 * 109.30857 * 61.36564 * 5 4 2 7 7 H 1.08998 * 109.70347 * 65.22251 * 6 5 4 8 8 C 1.53002 * 109.58443 * 185.58341 * 6 5 4 9 9 N 1.46498 * 109.46772 * 179.41982 * 8 6 5 10 10 C 1.34784 * 119.99821 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99809 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.46733 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46873 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.80237 * 308.62856 * 14 13 12 16 16 C 1.54809 * 110.90463 * 185.00064 * 14 13 12 17 17 C 1.54104 * 104.18560 * 220.92031 * 16 14 13 18 18 O 1.43743 * 107.29315 * 357.97456 * 17 16 14 19 19 C 1.44378 * 106.97571 * 26.50798 * 18 17 16 20 20 N 1.46928 * 108.77445 * 305.36681 * 6 5 4 21 21 C 1.36939 * 120.62860 * 233.62977 * 20 6 5 22 22 H 1.07995 * 119.99832 * 49.49042 * 21 20 6 23 23 C 1.38810 * 119.99836 * 229.48196 * 21 20 6 24 24 N 1.31620 * 119.99924 * 188.54697 * 23 21 20 25 25 Si 1.86804 * 120.00192 * 8.55293 * 23 21 20 26 26 H 1.48504 * 109.47162 * 84.39601 * 25 23 21 27 27 H 1.48500 * 109.47032 * 204.39817 * 25 23 21 28 28 H 1.48501 * 109.46918 * 324.40112 * 25 23 21 29 29 C 1.46924 * 118.73860 * 53.61070 * 20 6 5 30 30 H 1.08999 * 109.47759 * 299.91863 * 1 2 3 31 31 H 1.09007 * 109.46962 * 59.92379 * 1 2 3 32 32 H 1.09004 * 109.47035 * 179.91799 * 1 2 3 33 33 H 1.08999 * 109.47135 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47121 * 300.08050 * 3 2 1 35 35 H 1.09000 * 109.46954 * 60.08031 * 3 2 1 36 36 H 1.09001 * 109.46361 * 298.70931 * 4 2 1 37 37 H 1.09005 * 109.45707 * 58.67332 * 4 2 1 38 38 H 1.08998 * 109.49767 * 301.42193 * 5 4 2 39 39 H 1.08993 * 109.50447 * 181.31503 * 5 4 2 40 40 H 1.09004 * 109.46935 * 299.41348 * 8 6 5 41 41 H 1.08992 * 109.47464 * 59.41592 * 8 6 5 42 42 H 0.96996 * 120.00377 * 359.97438 * 9 8 6 43 43 H 1.08995 * 109.47205 * 299.99868 * 12 10 9 44 44 H 1.08999 * 109.47170 * 60.00364 * 12 10 9 45 45 H 1.08995 * 109.47269 * 299.99954 * 13 12 10 46 46 H 1.08999 * 109.46893 * 60.00319 * 13 12 10 47 47 H 1.09004 * 110.48908 * 339.59690 * 16 14 13 48 48 H 1.08998 * 110.48872 * 102.11702 * 16 14 13 49 49 H 1.09001 * 109.87895 * 117.39652 * 17 16 14 50 50 H 1.09003 * 109.87734 * 238.54793 * 17 16 14 51 51 H 1.09006 * 110.61433 * 201.43922 * 19 18 17 52 52 H 1.09005 * 110.61355 * 78.44780 * 19 18 17 53 53 H 0.97005 * 119.99835 * 180.02562 * 24 23 21 54 54 H 1.09002 * 109.58789 * 66.17457 * 29 20 6 55 55 H 1.08998 * 109.58342 * 186.45917 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2660 6 6 4.1053 -1.4267 -0.0306 7 1 3.8396 -2.4824 -0.0852 8 6 5.6273 -1.2833 0.0319 9 7 6.1341 -1.9721 1.2214 10 6 7.4561 -1.9793 1.4839 11 8 8.2261 -1.4160 0.7351 12 6 7.9774 -2.6873 2.7078 13 6 9.4996 -2.5451 2.7696 14 6 10.0290 -3.2645 4.0119 15 1 9.4898 -2.9448 4.9035 16 6 11.5514 -3.0366 4.1754 17 6 12.0942 -4.4109 4.6132 18 8 10.9686 -5.2972 4.7301 19 6 9.9478 -4.8023 3.8371 20 7 3.5045 -0.8291 1.1697 21 6 4.2935 -0.3785 2.1942 22 1 5.1299 0.2722 1.9856 23 6 4.0182 -0.7578 3.5007 24 7 4.6661 -0.1964 4.4995 25 14 2.7282 -2.0653 3.8416 26 1 3.3430 -3.4114 3.7175 27 1 2.1961 -1.8890 5.2168 28 1 1.6203 -1.9349 2.8615 29 6 2.0412 -0.7238 1.2496 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8894 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.6967 -1.7573 -1.2353 37 1 1.6583 -0.2244 -2.1389 38 1 3.9159 0.3388 -1.2539 39 1 3.9335 -1.1897 -2.1669 40 1 6.0708 -1.7252 -0.8604 41 1 5.8909 -0.2270 0.0837 42 1 5.5184 -2.4229 1.8201 43 1 7.5343 -2.2448 3.5999 44 1 7.7134 -3.7436 2.6566 45 1 9.9424 -2.9879 1.8774 46 1 9.7640 -1.4889 2.8206 47 1 11.9962 -2.7353 3.2269 48 1 11.7447 -2.2861 4.9419 49 1 12.7888 -4.7908 3.8641 50 1 12.5969 -4.3211 5.5762 51 1 8.9661 -5.1712 4.1344 52 1 10.1691 -5.0840 2.8076 53 1 4.4739 -0.4618 5.4125 54 1 1.6052 -1.7216 1.2980 55 1 1.7636 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099017296.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:55 Heat of formation + Delta-G solvation = -97.301183 kcal Electronic energy + Delta-G solvation = -31486.303420 eV Core-core repulsion = 27522.266438 eV Total energy + Delta-G solvation = -3964.036982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.97126 -40.42614 -39.87388 -36.68515 -35.44005 -34.84787 -33.71998 -32.52354 -31.84191 -29.83209 -28.65469 -28.07063 -27.27029 -25.79164 -24.56646 -23.89833 -23.10463 -21.66959 -21.34539 -20.88741 -19.84332 -18.47135 -17.73396 -17.47861 -17.13129 -16.82472 -16.57209 -16.50930 -16.30630 -15.79819 -15.52256 -15.31729 -14.89306 -14.81001 -14.69642 -14.45934 -14.23937 -14.07176 -13.92954 -13.65391 -13.33548 -13.14948 -12.94521 -12.81548 -12.72497 -12.65693 -12.53670 -12.48382 -12.30392 -12.24252 -12.06831 -11.95878 -11.92115 -11.63958 -11.43351 -11.40766 -11.21295 -11.06538 -10.92806 -10.65416 -10.63153 -10.39880 -9.75054 -8.38192 -8.03957 -5.63330 1.42164 1.51966 1.56076 1.82544 2.51733 2.53571 3.01040 3.21803 3.34903 3.56303 3.77578 3.90005 3.93907 3.99342 4.03563 4.10522 4.15263 4.25897 4.29864 4.32754 4.38553 4.44824 4.49469 4.62683 4.64905 4.68951 4.76859 4.79006 4.81548 4.86427 4.88307 4.89036 4.92921 5.01683 5.05448 5.06911 5.07669 5.09563 5.14201 5.15871 5.22017 5.22248 5.32052 5.34965 5.48669 5.50676 5.58471 5.74750 5.77708 5.91150 6.08267 6.39650 6.80399 7.10059 7.45292 7.68833 8.20575 9.12036 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002968 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.226917 B = 9430.764165 C =10300.392435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.091 4.091 5 C -0.126 4.126 6 C 0.160 3.840 7 H 0.050 0.950 8 C 0.142 3.858 9 N -0.692 5.692 10 C 0.505 3.495 11 O -0.600 6.600 12 C -0.135 4.135 13 C -0.077 4.077 14 C -0.120 4.120 15 H 0.080 0.920 16 C -0.151 4.151 17 C 0.044 3.956 18 O -0.403 6.403 19 C 0.049 3.951 20 N -0.609 5.609 21 C -0.224 4.224 22 H 0.026 0.974 23 C -0.002 4.002 24 N -0.952 5.952 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.322 1.322 28 H -0.206 1.206 29 C 0.147 3.853 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.406 0.594 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.097 0.903 52 H 0.071 0.929 53 H 0.257 0.743 54 H 0.037 0.963 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -7.634 -7.555 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.178 4.178 4 C -0.129 4.129 5 C -0.165 4.165 6 C 0.055 3.945 7 H 0.068 0.932 8 C 0.018 3.982 9 N -0.340 5.340 10 C 0.293 3.707 11 O -0.483 6.483 12 C -0.175 4.175 13 C -0.115 4.115 14 C -0.139 4.139 15 H 0.098 0.902 16 C -0.188 4.188 17 C -0.032 4.032 18 O -0.323 6.323 19 C -0.027 4.027 20 N -0.335 5.335 21 C -0.355 4.355 22 H 0.044 0.956 23 C -0.199 4.199 24 N -0.596 5.596 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.251 1.251 28 H -0.130 1.130 29 C 0.023 3.977 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.242 0.758 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.111 0.889 51 H 0.116 0.884 52 H 0.089 0.911 53 H 0.066 0.934 54 H 0.055 0.945 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.121 -7.421 -7.793 10.968 hybrid contribution -0.625 0.123 1.275 1.425 sum 1.497 -7.298 -6.518 9.898 Atomic orbital electron populations 1.21764 0.93596 1.01923 1.01780 1.21074 0.95673 0.95651 0.96446 1.21651 1.00595 0.95499 1.00068 1.21404 0.94414 1.00334 0.96704 1.21950 0.96719 1.00653 0.97204 1.21001 0.89974 0.95806 0.87706 0.93192 1.21170 0.94085 0.95860 0.87098 1.45954 1.07058 1.53984 1.27049 1.21048 0.82305 0.80243 0.87128 1.90583 1.57541 1.48282 1.51896 1.21661 0.97846 1.02243 0.95736 1.21127 0.92540 1.00533 0.97272 1.22723 0.96750 0.95873 0.98544 0.90177 1.22999 0.94349 0.98236 1.03237 1.23296 0.89040 0.88440 1.02467 1.88823 1.26992 1.51883 1.64608 1.23753 0.92461 0.92144 0.94352 1.44364 1.01204 1.70541 1.17388 1.18171 1.09520 1.22347 0.85415 0.95610 1.26197 0.98797 0.99050 0.95834 1.69941 1.45235 1.45322 0.99114 0.86912 0.83363 0.80630 0.76863 1.20657 1.25061 1.12982 1.21717 0.83606 0.96682 0.95686 0.93609 0.91304 0.92209 0.94030 0.92126 0.95032 0.91607 0.90715 0.92767 0.90027 0.91105 0.95028 0.75773 0.89779 0.87109 0.90949 0.92744 0.89820 0.89817 0.91302 0.88871 0.88435 0.91115 0.93374 0.94523 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.48 71.98 0.61 -2.53 16 2 C -0.09 -2.52 0.77 -52.11 -0.04 -2.56 16 3 C -0.12 -3.80 7.99 71.98 0.57 -3.22 16 4 C -0.09 -2.24 4.71 30.62 0.14 -2.09 16 5 C -0.13 -3.46 5.03 30.67 0.15 -3.31 16 6 C 0.16 5.37 3.01 44.98 0.14 5.51 16 7 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 8 C 0.14 5.25 4.50 86.38 0.39 5.63 16 9 N -0.69 -26.82 4.13 -463.06 -1.91 -28.74 16 10 C 0.50 19.77 7.83 87.65 0.69 20.46 16 11 O -0.60 -26.75 15.98 -3.02 -0.05 -26.79 16 12 C -0.14 -4.27 5.60 29.85 0.17 -4.11 16 13 C -0.08 -2.15 3.90 30.60 0.12 -2.04 16 14 C -0.12 -2.85 3.10 -9.49 -0.03 -2.88 16 15 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.15 -3.01 6.60 31.59 0.21 -2.81 16 17 C 0.04 0.85 7.70 72.36 0.56 1.40 16 18 O -0.40 -10.08 11.52 -148.98 -1.72 -11.80 16 19 C 0.05 1.10 6.62 72.66 0.48 1.58 16 20 N -0.61 -24.43 1.85 -675.21 -1.25 -25.68 16 21 C -0.22 -11.13 6.60 84.03 0.55 -10.58 16 22 H 0.03 1.56 7.11 -2.91 -0.02 1.53 16 23 C 0.00 -0.10 5.28 84.86 0.45 0.35 16 24 N -0.95 -55.30 13.97 21.65 0.30 -54.99 16 25 Si 0.89 39.59 26.62 68.60 1.83 41.42 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.32 -15.42 7.11 99.48 0.71 -14.71 16 28 H -0.21 -8.08 3.87 99.48 0.39 -7.70 16 29 C 0.15 5.40 2.71 86.36 0.23 5.63 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.52 5.97 -2.39 -0.01 1.51 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.67 6.33 -2.39 -0.02 1.65 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.03 1.37 7.47 -2.39 -0.02 1.36 16 42 H 0.41 16.04 7.32 -92.71 -0.68 15.36 16 43 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.11 2.84 7.72 -2.39 -0.02 2.82 16 45 H 0.07 1.98 7.94 -2.39 -0.02 1.96 16 46 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 47 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 52 H 0.07 1.45 7.93 -2.38 -0.02 1.43 16 53 H 0.26 14.53 8.31 -92.70 -0.77 13.75 16 54 H 0.04 1.31 6.36 -2.39 -0.02 1.29 16 55 H 0.04 1.56 6.48 -2.39 -0.02 1.54 16 Total: -1.00 -64.58 407.75 2.44 -62.14 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.15 Total: 40.00 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.39 Total: 4.44 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -2.86 Total: -109.41 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.76 Total: -38.59 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.83 Total: 41.42 kcal Total: -64.58 2.44 -62.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099017296.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.162 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds