Wall clock time and date at job start Tue Mar 31 2020 21:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47466 * 2 1 4 4 C 1.53001 * 109.46777 * 120.00378 * 2 1 3 5 5 C 1.50706 * 109.46565 * 176.71177 * 4 2 1 6 6 O 1.21277 * 120.00563 * 4.24870 * 5 4 2 7 7 N 1.34783 * 119.99671 * 184.24867 * 5 4 2 8 8 C 1.46495 * 120.00160 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47314 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.70134 * 59.90946 * 9 8 7 11 11 C 1.53623 * 109.66389 * 180.50001 * 9 8 7 12 12 C 1.53050 * 109.23984 * 174.54937 * 11 9 8 13 13 C 1.53035 * 109.53628 * 298.51097 * 12 11 9 14 14 C 1.53002 * 109.49896 * 301.41380 * 13 12 11 15 15 C 1.53006 * 109.52043 * 181.33424 * 13 12 11 16 16 C 1.53185 * 109.31342 * 61.36576 * 13 12 11 17 17 N 1.46920 * 108.77714 * 305.36379 * 16 13 12 18 18 C 1.36943 * 120.62916 * 233.58438 * 17 16 13 19 19 H 1.08004 * 119.99329 * 148.09743 * 18 17 16 20 20 C 1.38810 * 120.00252 * 328.10445 * 18 17 16 21 21 N 1.31619 * 120.00064 * 163.92169 * 20 18 17 22 22 Si 1.86800 * 119.99812 * 343.64102 * 20 18 17 23 23 H 1.48503 * 109.47233 * 89.70720 * 22 20 18 24 24 H 1.48497 * 109.47138 * 209.70823 * 22 20 18 25 25 H 1.48500 * 109.47284 * 329.70509 * 22 20 18 26 26 C 1.53009 * 109.46802 * 239.99772 * 2 1 3 27 27 C 1.53001 * 117.49395 * 128.74878 * 26 2 1 28 28 C 1.52998 * 117.49779 * 60.09283 * 26 2 1 29 29 H 1.08996 * 109.46834 * 304.21709 * 1 2 3 30 30 H 1.09005 * 109.46830 * 64.21738 * 1 2 3 31 31 H 1.09001 * 109.47027 * 184.21742 * 1 2 3 32 32 H 0.96696 * 114.00002 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47340 * 56.71330 * 4 2 1 34 34 H 1.08999 * 109.47113 * 296.70264 * 4 2 1 35 35 H 0.97001 * 120.00025 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.46629 * 60.00080 * 8 7 5 37 37 H 1.09000 * 109.46829 * 300.00462 * 8 7 5 38 38 H 1.09000 * 109.63922 * 54.56214 * 11 9 8 39 39 H 1.09002 * 109.46245 * 294.43058 * 11 9 8 40 40 H 1.09003 * 109.45341 * 178.48997 * 12 11 9 41 41 H 1.09002 * 109.46012 * 58.53398 * 12 11 9 42 42 H 1.09003 * 109.47377 * 179.84410 * 14 13 12 43 43 H 1.09001 * 109.47039 * 299.84162 * 14 13 12 44 44 H 1.08996 * 109.46987 * 59.83746 * 14 13 12 45 45 H 1.09000 * 109.47227 * 300.14390 * 15 13 12 46 46 H 1.08999 * 109.47333 * 60.14723 * 15 13 12 47 47 H 1.09003 * 109.46921 * 180.14380 * 15 13 12 48 48 H 1.08999 * 109.58678 * 185.57450 * 16 13 12 49 49 H 1.08999 * 109.70475 * 65.22481 * 16 13 12 50 50 H 0.96999 * 119.99848 * 179.72923 * 21 20 18 51 51 H 1.08997 * 115.54724 * 274.41928 * 26 2 1 52 52 H 1.08996 * 117.49953 * 0.02562 * 27 26 2 53 53 H 1.08997 * 117.49668 * 145.02064 * 27 26 2 54 54 H 1.09001 * 117.49914 * 214.98041 * 28 26 2 55 55 H 1.09003 * 117.49588 * 359.97143 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5448 -0.7923 1.2091 6 8 4.1541 -0.2465 0.3137 7 7 4.2137 -1.4623 2.1684 8 6 5.6764 -1.5318 2.1292 9 6 6.1806 -2.3451 3.3230 10 1 5.7684 -3.3533 3.2812 11 6 7.7151 -2.4102 3.2931 12 6 8.2152 -3.1072 4.5606 13 6 7.7915 -2.2998 5.7897 14 6 8.3641 -0.8843 5.6930 15 6 8.3200 -2.9792 7.0547 16 6 6.2624 -2.2300 5.8476 17 7 5.7649 -1.6945 4.5731 18 6 4.9250 -0.6131 4.5510 19 1 4.9599 0.0808 3.7241 20 6 4.0290 -0.4087 5.5913 21 7 3.4534 0.7652 5.7430 22 14 3.6343 -1.8020 6.7713 23 1 4.5883 -1.7724 7.9090 24 1 2.2494 -1.6406 7.2822 25 1 3.7515 -3.1007 6.0607 26 6 2.0400 -0.7214 -1.2493 27 6 3.0763 0.0039 -2.1101 28 6 1.6375 -0.1484 -2.6096 29 1 -0.3633 0.5779 0.8498 30 1 -0.3633 0.4470 -0.9254 31 1 -0.3633 -1.0249 0.0756 32 1 2.9704 1.4235 -0.0004 33 1 1.6293 -1.7305 1.2791 34 1 1.7257 -0.1746 2.1382 35 1 3.7264 -1.8992 2.8845 36 1 6.0893 -0.5241 2.1752 37 1 5.9926 -2.0122 1.2033 38 1 8.1239 -1.4008 3.2478 39 1 8.0377 -2.9730 2.4171 40 1 9.3024 -3.1793 4.5304 41 1 7.7865 -4.1078 4.6180 42 1 8.0598 -0.3087 6.5673 43 1 9.4522 -0.9345 5.6518 44 1 7.9883 -0.4012 4.7911 45 1 7.9127 -3.9880 7.1226 46 1 9.4081 -3.0286 7.0131 47 1 8.0156 -2.4048 7.9297 48 1 5.9571 -1.5746 6.6633 49 1 5.8547 -3.2279 6.0087 50 1 2.8244 0.9068 6.4677 51 1 2.1252 -1.8047 -1.1647 52 1 3.3951 0.9946 -1.7862 53 1 3.8431 -0.6024 -2.5922 54 1 1.4582 -0.8548 -3.4202 55 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099022560.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:20 Heat of formation + Delta-G solvation = -65.004301 kcal Electronic energy + Delta-G solvation = -32449.690259 eV Core-core repulsion = 28487.053776 eV Total energy + Delta-G solvation = -3962.636484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.32226 -40.46322 -39.03996 -36.59408 -35.84280 -34.91647 -33.83049 -32.97319 -32.47349 -29.79604 -28.22631 -28.10587 -27.27684 -25.18115 -24.27688 -23.82418 -23.05533 -21.59916 -21.31223 -20.61907 -19.89212 -18.52457 -17.94927 -17.58225 -17.22458 -17.09589 -16.64974 -16.17559 -15.97292 -15.57260 -15.35725 -15.07782 -14.97153 -14.89329 -14.52645 -14.17655 -14.09804 -13.72508 -13.62229 -13.45671 -13.26173 -13.11197 -12.99077 -12.90171 -12.85311 -12.78699 -12.64939 -12.42989 -12.19899 -12.16890 -12.10715 -11.92419 -11.84238 -11.52977 -11.37650 -11.29102 -11.16588 -11.04745 -10.98856 -10.72698 -10.56819 -10.34981 -9.72295 -8.71059 -8.04334 -5.41105 1.33885 1.42881 1.50767 1.84433 2.47430 2.50999 3.00176 3.13330 3.34994 3.35643 3.74681 3.87728 3.89015 3.94413 3.95779 4.04738 4.19055 4.24847 4.26060 4.37080 4.43796 4.45450 4.52947 4.57098 4.69208 4.73265 4.76350 4.80879 4.85409 4.86200 4.87598 4.93856 4.95255 4.97051 4.99794 5.02535 5.08630 5.12589 5.18073 5.19648 5.27345 5.31681 5.36393 5.40447 5.43570 5.47719 5.53029 5.72642 5.75188 6.00186 6.30826 6.76432 6.81058 7.00685 7.47325 7.72059 8.13943 9.14151 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003723 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.904076 B = 7518.109937 C = 8683.285270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 O -0.579 6.579 4 C -0.164 4.164 5 C 0.510 3.490 6 O -0.573 6.573 7 N -0.696 5.696 8 C 0.143 3.857 9 C 0.162 3.838 10 H 0.050 0.950 11 C -0.126 4.126 12 C -0.091 4.091 13 C -0.083 4.083 14 C -0.122 4.122 15 C -0.136 4.136 16 C 0.134 3.866 17 N -0.610 5.610 18 C -0.216 4.216 19 H 0.059 0.941 20 C -0.024 4.024 21 N -0.956 5.956 22 Si 0.932 3.068 23 H -0.290 1.290 24 H -0.322 1.322 25 H -0.254 1.254 26 C -0.171 4.171 27 C -0.151 4.151 28 C -0.167 4.167 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.381 0.619 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.406 0.594 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.028 0.972 50 H 0.255 0.745 51 H 0.106 0.894 52 H 0.079 0.921 53 H 0.086 0.914 54 H 0.107 0.893 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -10.848 -8.917 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.133 3.867 3 O -0.390 6.390 4 C -0.204 4.204 5 C 0.297 3.703 6 O -0.455 6.455 7 N -0.345 5.345 8 C 0.019 3.981 9 C 0.057 3.943 10 H 0.068 0.932 11 C -0.165 4.165 12 C -0.129 4.129 13 C -0.085 4.085 14 C -0.179 4.179 15 C -0.193 4.193 16 C 0.009 3.991 17 N -0.335 5.335 18 C -0.346 4.346 19 H 0.077 0.923 20 C -0.219 4.219 21 N -0.603 5.603 22 Si 0.764 3.236 23 H -0.218 1.218 24 H -0.251 1.251 25 H -0.178 1.178 26 C -0.189 4.189 27 C -0.188 4.188 28 C -0.204 4.204 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.064 0.936 51 H 0.124 0.876 52 H 0.097 0.903 53 H 0.104 0.896 54 H 0.125 0.875 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.431 -10.275 -9.470 14.183 hybrid contribution -0.098 -0.146 1.721 1.730 sum 2.333 -10.422 -7.749 13.194 Atomic orbital electron populations 1.21760 0.90878 1.03602 1.02794 1.20507 0.94778 0.80981 0.90446 1.86379 1.28579 1.27233 1.96802 1.22425 0.92211 1.04665 1.01102 1.20790 0.90547 0.77828 0.81127 1.90544 1.70680 1.47507 1.36761 1.45975 1.07579 1.53890 1.27103 1.21160 0.80229 0.99241 0.97449 1.21046 0.94435 0.94392 0.84460 0.93209 1.22032 0.94634 1.01177 0.98669 1.21413 1.00884 0.97983 0.92606 1.21006 0.95041 0.95921 0.96538 1.21663 0.99785 0.95774 1.00684 1.21798 1.01616 1.00039 0.95889 1.21448 0.93472 0.96054 0.88120 1.44464 1.53923 1.34044 1.01060 1.18679 1.09882 0.99445 1.06593 0.92298 1.25800 0.98187 0.97688 1.00218 1.69942 1.33373 1.23286 1.33691 0.86159 0.74827 0.82625 0.80039 1.21770 1.25149 1.17778 1.22782 1.05270 0.99061 0.91834 1.22589 0.92059 1.01478 1.02689 1.23037 0.97941 1.03019 0.96370 0.92683 0.91167 0.88902 0.76679 0.86109 0.89625 0.75779 0.94581 0.90710 0.92511 0.89739 0.90414 0.91662 0.95428 0.91727 0.93619 0.92139 0.90789 0.94050 0.94129 0.95461 0.93567 0.87618 0.90261 0.89593 0.87501 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.75 71.98 0.63 -2.52 16 2 C 0.17 5.00 0.92 -10.79 -0.01 4.99 16 3 O -0.58 -20.36 12.12 -132.42 -1.61 -21.97 16 4 C -0.16 -4.99 4.98 29.85 0.15 -4.84 16 5 C 0.51 17.95 7.32 87.66 0.64 18.59 16 6 O -0.57 -21.67 11.35 13.54 0.15 -21.52 16 7 N -0.70 -24.71 3.87 -463.07 -1.79 -26.51 16 8 C 0.14 4.90 4.44 86.38 0.38 5.29 16 9 C 0.16 5.27 3.03 45.12 0.14 5.40 16 10 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 11 C -0.13 -3.36 5.05 30.82 0.16 -3.21 16 12 C -0.09 -2.25 4.71 30.62 0.14 -2.10 16 13 C -0.08 -2.51 0.77 -52.10 -0.04 -2.55 16 14 C -0.12 -3.95 7.99 71.98 0.57 -3.37 16 15 C -0.14 -3.40 8.48 71.98 0.61 -2.79 16 16 C 0.13 5.14 2.87 86.36 0.25 5.39 16 17 N -0.61 -24.66 2.14 -674.46 -1.44 -26.10 16 18 C -0.22 -10.72 7.40 84.03 0.62 -10.10 16 19 H 0.06 3.33 6.11 -2.91 -0.02 3.31 16 20 C -0.02 -1.30 5.28 84.86 0.45 -0.85 16 21 N -0.96 -57.27 13.97 21.65 0.30 -56.97 16 22 Si 0.93 43.72 24.32 68.60 1.67 45.39 16 23 H -0.29 -13.52 6.57 99.48 0.65 -12.87 16 24 H -0.32 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.25 -10.95 6.67 99.48 0.66 -10.29 16 26 C -0.17 -4.42 3.98 -10.79 -0.04 -4.47 16 27 C -0.15 -4.13 7.95 30.62 0.24 -3.89 16 28 C -0.17 -3.78 9.62 30.62 0.29 -3.48 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.55 7.15 -2.38 -0.02 1.53 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.38 14.16 5.34 -74.06 -0.40 13.77 16 33 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.41 14.88 7.41 -92.71 -0.69 14.20 16 36 H 0.04 1.47 7.40 -2.39 -0.02 1.45 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.06 1.69 6.33 -2.39 -0.02 1.68 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.69 5.97 -2.39 -0.01 1.68 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.04 1.82 4.74 -2.39 -0.01 1.81 16 49 H 0.03 1.03 6.98 -2.39 -0.02 1.01 16 50 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 51 H 0.11 2.56 8.11 -2.39 -0.02 2.54 16 52 H 0.08 2.47 6.28 -2.39 -0.02 2.45 16 53 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 54 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 55 H 0.09 2.10 7.59 -2.39 -0.02 2.08 16 Total: -1.00 -62.68 399.65 2.17 -60.51 By element: Atomic # 1 Polarization: 51.98 SS G_CDS: -0.30 Total: 51.68 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.19 Total: -4.52 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -2.93 Total: -109.57 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.45 Total: -43.49 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.39 kcal Total: -62.68 2.17 -60.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099022560.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.494 kcal (2) G-P(sol) polarization free energy of solvation -62.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds