Wall clock time and date at job start Tue Mar 31 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99845 * 2 1 4 4 C 1.52996 * 112.85238 * 305.67758 * 3 2 1 5 5 C 1.50697 * 109.46808 * 298.89011 * 4 3 2 6 6 O 1.21282 * 120.00289 * 5.08058 * 5 4 3 7 7 N 1.34784 * 119.99979 * 185.08100 * 5 4 3 8 8 C 1.46496 * 119.99832 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46845 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.70017 * 297.07906 * 9 8 7 11 11 C 1.52763 * 109.50777 * 176.96150 * 9 8 7 12 12 C 1.53039 * 109.37976 * 185.70369 * 11 9 8 13 13 C 1.53043 * 109.53855 * 61.24125 * 12 11 9 14 14 C 1.53000 * 109.49647 * 178.67954 * 13 12 11 15 15 C 1.53001 * 109.52407 * 58.60194 * 13 12 11 16 16 C 1.53190 * 109.31201 * 298.63359 * 13 12 11 17 17 N 1.46921 * 109.58755 * 57.43593 * 9 8 7 18 18 C 1.36934 * 120.63134 * 353.41673 * 17 9 8 19 19 H 1.08005 * 120.00346 * 34.51173 * 18 17 9 20 20 C 1.38811 * 120.00478 * 214.51619 * 18 17 9 21 21 N 1.31627 * 119.99872 * 22.26722 * 20 18 17 22 22 Si 1.86795 * 120.00650 * 202.26776 * 20 18 17 23 23 H 1.48503 * 109.47015 * 270.00077 * 22 20 18 24 24 H 1.48500 * 109.46919 * 29.99463 * 22 20 18 25 25 H 1.48499 * 109.47613 * 149.99889 * 22 20 18 26 26 C 1.53783 * 113.60810 * 76.86971 * 3 2 1 27 27 C 1.53958 * 87.02119 * 89.22635 * 26 3 2 28 28 C 1.53782 * 113.61181 * 174.47301 * 3 2 1 29 29 H 1.08995 * 109.46768 * 185.75694 * 1 2 3 30 30 H 1.09004 * 109.46831 * 305.75219 * 1 2 3 31 31 H 1.08998 * 109.47564 * 65.75521 * 1 2 3 32 32 H 1.09002 * 109.46838 * 178.89717 * 4 3 2 33 33 H 1.08998 * 109.47575 * 58.89547 * 4 3 2 34 34 H 0.97004 * 119.99631 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47851 * 59.99588 * 8 7 5 36 36 H 1.09005 * 109.47078 * 299.99368 * 8 7 5 37 37 H 1.08999 * 109.56387 * 65.66999 * 11 9 8 38 38 H 1.08996 * 109.35785 * 305.61674 * 11 9 8 39 39 H 1.09002 * 109.46274 * 301.21798 * 12 11 9 40 40 H 1.09009 * 109.45863 * 181.26205 * 12 11 9 41 41 H 1.09004 * 109.47062 * 179.83720 * 14 13 12 42 42 H 1.09001 * 109.47463 * 299.84207 * 14 13 12 43 43 H 1.09005 * 109.47182 * 59.84085 * 14 13 12 44 44 H 1.09004 * 109.46789 * 300.14617 * 15 13 12 45 45 H 1.08999 * 109.47036 * 60.14312 * 15 13 12 46 46 H 1.08992 * 109.47269 * 180.14587 * 15 13 12 47 47 H 1.09006 * 109.58440 * 294.84824 * 16 13 12 48 48 H 1.09002 * 109.70515 * 174.49318 * 16 13 12 49 49 H 0.97003 * 119.99741 * 3.41363 * 21 20 18 50 50 H 1.09004 * 113.61659 * 203.74655 * 26 3 2 51 51 H 1.08997 * 113.61496 * 334.65318 * 26 3 2 52 52 H 1.08995 * 113.53693 * 270.81334 * 27 26 3 53 53 H 1.09002 * 113.74017 * 139.93683 * 27 26 3 54 54 H 1.08998 * 113.61355 * 25.35491 * 28 3 2 55 55 H 1.09002 * 113.60819 * 156.17322 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5007 2.1827 -1.1453 5 6 1.8573 1.5451 -2.4633 6 8 2.3771 0.4496 -2.4860 7 7 1.5985 2.1923 -3.6169 8 6 1.9447 1.5721 -4.8982 9 6 1.5480 2.5083 -6.0416 10 1 0.4676 2.6531 -6.0399 11 6 1.9768 1.8965 -7.3740 12 6 1.7082 2.8958 -8.5015 13 6 2.5279 4.1664 -8.2654 14 6 2.2839 5.1516 -9.4103 15 6 4.0150 3.8117 -8.2052 16 6 2.1008 4.8060 -6.9406 17 7 2.2189 3.8044 -5.8722 18 6 2.9451 4.0718 -4.7425 19 1 3.4989 3.2818 -4.2569 20 6 2.9696 5.3580 -4.2212 21 7 2.0011 6.2024 -4.5068 22 14 4.3768 5.8908 -3.1144 23 1 4.0351 5.5914 -1.7005 24 1 5.6098 5.1544 -3.4922 25 1 4.6042 7.3500 -3.2703 26 6 1.9683 1.9983 1.3723 27 6 3.3287 1.3368 1.6582 28 6 3.5420 1.2978 0.1357 29 1 -0.3633 -1.0225 0.1031 30 1 -0.3633 0.6005 0.8340 31 1 -0.3634 0.4220 -0.9370 32 1 1.9627 3.1679 -1.0815 33 1 0.4179 2.2838 -1.0716 34 1 1.1824 3.0683 -3.5987 35 1 1.4107 0.6274 -5.0008 36 1 3.0185 1.3883 -4.9346 37 1 1.4107 0.9828 -7.5551 38 1 3.0412 1.6647 -7.3392 39 1 0.6475 3.1461 -8.5199 40 1 1.9929 2.4520 -9.4556 41 1 2.8657 6.0576 -9.2402 42 1 2.5880 4.6961 -10.3527 43 1 1.2242 5.4032 -9.4536 44 1 4.1882 3.1089 -7.3902 45 1 4.3185 3.3566 -9.1480 46 1 4.5978 4.7168 -8.0344 47 1 1.0663 5.1420 -7.0138 48 1 2.7460 5.6558 -6.7178 49 1 1.2454 5.9111 -5.0408 50 1 2.0152 3.0858 1.3141 51 1 1.1646 1.6423 2.0168 52 1 3.2457 0.3496 2.1128 53 1 4.0312 1.9860 2.1810 54 1 4.0069 0.3771 -0.2166 55 1 4.0201 2.1928 -0.2626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099049719.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:56 Heat of formation + Delta-G solvation = -63.229881 kcal Electronic energy + Delta-G solvation = -32511.254025 eV Core-core repulsion = 28548.694486 eV Total energy + Delta-G solvation = -3962.559539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44872 -40.56412 -39.46830 -36.64571 -36.52134 -35.15989 -33.74510 -31.58575 -31.44275 -28.70345 -28.12065 -27.89432 -27.23487 -26.48838 -25.19071 -23.98654 -23.53120 -21.83992 -21.09886 -20.36743 -19.50135 -18.98243 -17.74788 -17.39517 -17.12064 -16.90007 -16.14605 -16.04680 -15.97228 -15.76789 -15.54912 -15.37789 -15.12536 -14.90171 -14.80877 -14.47560 -14.36572 -14.01844 -13.64420 -13.50498 -13.38868 -13.24707 -12.91805 -12.81735 -12.67896 -12.58502 -12.51360 -12.34816 -12.31051 -12.23968 -11.98704 -11.84563 -11.77280 -11.68608 -11.65288 -11.37884 -11.11443 -11.06269 -10.89676 -10.71046 -10.37888 -10.25236 -9.74775 -8.71718 -8.05102 -5.31144 1.55220 1.62441 1.78598 1.83545 2.42454 2.63862 2.82044 3.31752 3.49178 3.55341 3.66288 3.73959 3.90573 3.90867 3.93956 4.07088 4.16242 4.22469 4.33220 4.37287 4.43586 4.45568 4.48385 4.56175 4.57870 4.59777 4.70970 4.75742 4.77489 4.82008 4.82792 4.85531 4.87313 4.96375 4.99928 5.03744 5.04497 5.07342 5.13004 5.13568 5.22692 5.27158 5.29050 5.38649 5.41631 5.46710 5.55735 5.70451 5.73201 6.09210 6.38462 6.53729 6.81851 7.16395 7.47130 7.87445 8.36451 9.14827 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.003898 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.812916 B = 7181.052262 C = 8411.459837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.369 6.369 3 C 0.106 3.894 4 C -0.156 4.156 5 C 0.504 3.496 6 O -0.577 6.577 7 N -0.696 5.696 8 C 0.147 3.853 9 C 0.163 3.837 10 H 0.027 0.973 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.086 4.086 14 C -0.130 4.130 15 C -0.118 4.118 16 C 0.178 3.822 17 N -0.601 5.601 18 C -0.319 4.319 19 H 0.042 0.958 20 C -0.055 4.055 21 N -0.940 5.940 22 Si 1.087 2.913 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.296 1.296 26 C -0.151 4.151 27 C -0.123 4.123 28 C -0.131 4.131 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.408 0.592 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.001 0.999 48 H 0.034 0.966 49 H 0.258 0.742 50 H 0.100 0.900 51 H 0.086 0.914 52 H 0.084 0.916 53 H 0.085 0.915 54 H 0.055 0.945 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -6.689 2.784 8.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C 0.066 3.934 4 C -0.196 4.196 5 C 0.291 3.709 6 O -0.457 6.457 7 N -0.347 5.347 8 C 0.022 3.978 9 C 0.057 3.943 10 H 0.044 0.956 11 C -0.164 4.164 12 C -0.128 4.128 13 C -0.088 4.088 14 C -0.188 4.188 15 C -0.175 4.175 16 C 0.052 3.948 17 N -0.326 5.326 18 C -0.449 4.449 19 H 0.060 0.940 20 C -0.254 4.254 21 N -0.582 5.582 22 Si 0.915 3.085 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.223 1.223 26 C -0.188 4.188 27 C -0.161 4.161 28 C -0.168 4.168 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.019 0.981 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.119 0.881 51 H 0.104 0.896 52 H 0.102 0.898 53 H 0.103 0.897 54 H 0.074 0.926 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.365 -6.361 3.635 7.699 hybrid contribution -0.867 -0.349 -1.064 1.416 sum -3.232 -6.710 2.571 7.879 Atomic orbital electron populations 1.22836 0.80668 1.03485 1.00106 1.87950 1.20394 1.25845 1.94604 1.22301 0.94814 0.83364 0.92916 1.22244 1.04361 1.00987 0.92053 1.20835 0.78487 0.85299 0.86302 1.90646 1.45032 1.21898 1.88145 1.46113 1.61559 1.21870 1.05152 1.21080 0.98778 0.94845 0.83066 1.20745 0.94323 0.86103 0.93141 0.95576 1.21874 1.01457 0.98416 0.94690 1.21390 0.99034 0.94403 0.97983 1.21054 0.95865 0.96269 0.95588 1.21738 1.01208 0.98306 0.97570 1.21624 0.94931 1.00242 1.00739 1.20779 0.95822 0.91261 0.86889 1.44198 1.58852 1.12715 1.16860 1.19799 1.24035 0.96708 1.04370 0.94001 1.26509 1.02436 0.95005 1.01471 1.70857 1.08514 1.39408 1.39405 0.83188 0.74278 0.75164 0.75823 1.20219 1.21890 1.22261 1.23552 0.98904 1.01021 0.95362 1.22749 0.97213 1.01503 0.94590 1.22981 0.93971 1.01931 0.97966 0.88681 0.92066 0.95239 0.87811 0.87426 0.75471 0.92010 0.94462 0.90464 0.92432 0.92592 0.90622 0.93801 0.91080 0.92841 0.93796 0.91983 0.94994 0.98137 0.94701 0.93118 0.88144 0.89585 0.89789 0.89674 0.92579 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.31 113.37 1.17 1.77 16 2 O -0.37 -11.58 9.61 -132.63 -1.27 -12.85 16 3 C 0.11 3.09 0.40 -10.27 0.00 3.09 16 4 C -0.16 -4.86 4.61 29.85 0.14 -4.72 16 5 C 0.50 19.40 7.60 87.66 0.67 20.06 16 6 O -0.58 -25.55 14.95 13.32 0.20 -25.35 16 7 N -0.70 -27.22 3.78 -463.04 -1.75 -28.98 16 8 C 0.15 5.65 4.45 86.38 0.38 6.03 16 9 C 0.16 6.08 3.03 44.83 0.14 6.21 16 10 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 11 C -0.13 -3.89 5.00 30.53 0.15 -3.74 16 12 C -0.09 -2.62 4.71 30.62 0.14 -2.47 16 13 C -0.09 -2.86 0.77 -52.10 -0.04 -2.90 16 14 C -0.13 -3.68 8.48 71.98 0.61 -3.07 16 15 C -0.12 -4.00 7.99 71.98 0.58 -3.43 16 16 C 0.18 7.58 3.41 86.36 0.29 7.88 16 17 N -0.60 -26.26 2.19 -676.02 -1.48 -27.74 16 18 C -0.32 -15.58 6.52 84.03 0.55 -15.03 16 19 H 0.04 2.20 6.10 -2.91 -0.02 2.18 16 20 C -0.06 -2.85 4.72 84.86 0.40 -2.44 16 21 N -0.94 -51.67 12.72 21.65 0.28 -51.40 16 22 Si 1.09 48.61 29.97 68.60 2.06 50.67 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 26 C -0.15 -3.33 7.25 31.18 0.23 -3.10 16 27 C -0.12 -2.80 8.02 31.18 0.25 -2.55 16 28 C -0.13 -3.94 6.81 31.12 0.21 -3.73 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.16 7.31 -2.39 -0.02 1.14 16 31 H 0.03 0.74 6.94 -2.39 -0.02 0.73 16 32 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.11 2.88 6.89 -2.39 -0.02 2.86 16 34 H 0.41 16.81 7.14 -92.71 -0.66 16.15 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.61 7.57 -2.38 -0.02 1.59 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.91 6.33 -2.39 -0.02 1.90 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.04 1.68 5.97 -2.38 -0.01 1.67 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.00 0.03 7.80 -2.38 -0.02 0.01 16 48 H 0.03 1.73 6.74 -2.39 -0.02 1.71 16 49 H 0.26 14.42 6.67 -92.71 -0.62 13.80 16 50 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 51 H 0.09 1.64 7.47 -2.39 -0.02 1.62 16 52 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 55 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 Total: -1.00 -61.70 409.90 4.23 -57.47 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: 0.34 Total: 40.33 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.86 Total: -2.14 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -2.95 Total: -108.12 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.07 Total: -38.20 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.06 Total: 50.67 kcal Total: -61.70 4.23 -57.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099049719.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.763 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds