Wall clock time and date at job start Tue Mar 31 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00202 * 2 1 4 4 C 1.52993 * 109.47417 * 180.02562 * 3 2 1 5 5 C 1.53001 * 115.55341 * 293.79899 * 4 3 2 6 6 C 1.50706 * 109.47138 * 278.76228 * 5 4 3 7 7 O 1.21281 * 119.99620 * 5.65194 * 6 5 4 8 8 N 1.34777 * 119.99882 * 185.65655 * 6 5 4 9 9 C 1.46506 * 119.99472 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46692 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.58647 * 306.79512 * 10 9 8 12 12 C 1.53195 * 109.58789 * 186.36491 * 10 9 8 13 13 C 1.53033 * 109.31450 * 185.57740 * 12 10 9 14 14 C 1.53044 * 109.53874 * 61.37022 * 13 12 10 15 15 C 1.53000 * 109.49674 * 58.58194 * 14 13 12 16 16 C 1.52997 * 109.49902 * 178.65061 * 14 13 12 17 17 C 1.53632 * 109.23746 * 298.50951 * 14 13 12 18 18 N 1.46918 * 108.54344 * 54.85771 * 17 14 13 19 19 C 1.36940 * 120.63539 * 126.36839 * 18 17 14 20 20 H 1.07998 * 120.00140 * 213.08968 * 19 18 17 21 21 C 1.38811 * 119.99661 * 33.08807 * 19 18 17 22 22 N 1.31619 * 120.00207 * 195.61233 * 21 19 18 23 23 Si 1.86804 * 119.99864 * 15.61601 * 21 19 18 24 24 H 1.48507 * 109.46923 * 270.59019 * 23 21 19 25 25 H 1.48491 * 109.47457 * 30.59174 * 23 21 19 26 26 H 1.48498 * 109.47117 * 150.59467 * 23 21 19 27 27 C 1.53000 * 117.51825 * 79.49689 * 4 3 2 28 28 C 1.53000 * 117.49960 * 148.12961 * 4 3 2 29 29 H 1.08996 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46699 * 299.99413 * 1 2 3 31 31 H 1.08995 * 109.47293 * 59.99491 * 1 2 3 32 32 H 1.09005 * 109.46654 * 60.00061 * 3 2 1 33 33 H 1.08997 * 109.47168 * 300.00490 * 3 2 1 34 34 H 1.08994 * 109.47267 * 158.76101 * 5 4 3 35 35 H 1.09000 * 109.46977 * 38.75574 * 5 4 3 36 36 H 0.96997 * 119.99986 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47040 * 60.00084 * 9 8 6 38 38 H 1.08997 * 109.47445 * 299.99785 * 9 8 6 39 39 H 1.08999 * 109.49716 * 305.53164 * 12 10 9 40 40 H 1.09006 * 109.49321 * 65.59367 * 12 10 9 41 41 H 1.08998 * 109.46213 * 181.38485 * 13 12 10 42 42 H 1.08994 * 109.46278 * 301.36063 * 13 12 10 43 43 H 1.08994 * 109.47239 * 60.00301 * 15 14 13 44 44 H 1.09008 * 109.46912 * 180.02562 * 15 14 13 45 45 H 1.09003 * 109.47180 * 299.99811 * 15 14 13 46 46 H 1.08991 * 109.47310 * 60.00031 * 16 14 13 47 47 H 1.09004 * 109.46753 * 179.97438 * 16 14 13 48 48 H 1.08995 * 109.47023 * 299.99380 * 16 14 13 49 49 H 1.08995 * 109.73911 * 295.11256 * 17 14 13 50 50 H 1.09003 * 109.65821 * 174.54995 * 17 14 13 51 51 H 0.97000 * 120.00422 * 179.97438 * 22 21 19 52 52 H 1.09003 * 117.50103 * 214.96802 * 27 4 3 53 53 H 1.08996 * 117.49882 * 359.97438 * 27 4 3 54 54 H 1.09004 * 117.50038 * 359.97200 * 28 4 3 55 55 H 1.09000 * 117.50333 * 144.97999 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1499 0.5771 1.2620 6 6 4.2557 1.6362 2.3289 7 8 3.7845 2.7374 2.1389 8 7 4.8740 1.3595 3.4941 9 6 4.9773 2.3894 4.5310 10 6 5.7181 1.8204 5.7427 11 1 5.2392 0.8949 6.0623 12 6 5.6894 2.8386 6.8869 13 6 6.5481 2.3238 8.0443 14 6 7.9963 2.1645 7.5758 15 6 8.5217 3.5110 7.0740 16 6 8.8603 1.6819 8.7426 17 6 8.0499 1.1331 6.4384 18 7 7.1174 1.5523 5.3833 19 6 7.5428 1.6850 4.0885 20 1 7.1071 2.4408 3.4517 21 6 8.5340 0.8482 3.5944 22 7 9.1593 1.1564 2.4780 23 14 8.9803 -0.7153 4.5139 24 1 10.0501 -0.4208 5.5010 25 1 7.7820 -1.2323 5.2222 26 1 9.4640 -1.7358 3.5496 27 6 4.2200 0.8826 -1.3351 28 6 4.3304 2.2780 -0.7173 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 5.1433 0.1913 1.0332 35 1 3.5176 -0.2360 1.6187 36 1 5.2512 0.4789 3.6458 37 1 3.9779 2.7040 4.8314 38 1 5.5254 3.2460 4.1389 39 1 6.0855 3.7915 6.5359 40 1 4.6628 2.9745 7.2272 41 1 6.5095 3.0350 8.8694 42 1 6.1665 1.3591 8.3784 43 1 8.4797 4.2414 7.8820 44 1 9.5531 3.3970 6.7400 45 1 7.9066 3.8538 6.2420 46 1 8.4864 0.7222 9.0990 47 1 9.8916 1.5682 8.4083 48 1 8.8186 2.4112 9.5515 49 1 7.7580 0.1532 6.8161 50 1 9.0611 1.0850 6.0345 51 1 9.8522 0.5719 2.1329 52 1 5.1082 0.2510 -1.3136 53 1 3.5838 0.7693 -2.2129 54 1 3.7667 3.0831 -1.1888 55 1 5.2909 2.5646 -0.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099074036.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:46 Heat of formation + Delta-G solvation = -62.508932 kcal Electronic energy + Delta-G solvation = -31854.298322 eV Core-core repulsion = 27891.770045 eV Total energy + Delta-G solvation = -3962.528276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.07335 -40.33267 -39.13538 -37.52051 -36.52132 -34.98051 -33.73615 -32.50051 -30.85159 -29.11461 -28.31326 -28.09563 -27.25354 -26.36637 -25.06277 -24.04177 -23.30942 -21.66151 -21.50364 -20.07548 -19.85930 -18.43391 -17.69963 -17.28445 -17.19515 -16.89318 -16.87740 -16.57126 -16.36716 -15.61875 -15.53134 -15.33791 -15.21519 -14.97299 -14.70278 -14.50306 -14.34495 -14.13307 -13.93614 -13.44603 -13.24555 -13.20316 -12.92454 -12.88880 -12.80034 -12.68964 -12.51689 -12.42707 -12.34331 -12.20247 -12.13232 -11.99878 -11.85057 -11.52330 -11.37126 -11.26616 -11.11527 -11.03255 -10.98994 -10.65274 -10.56655 -10.38745 -9.78206 -8.70256 -8.04465 -5.42298 1.33948 1.43118 1.50916 1.84357 2.35024 2.48138 2.69405 3.12386 3.17208 3.34367 3.70172 3.80455 3.87795 3.94752 3.98915 4.03429 4.05070 4.25026 4.26823 4.37565 4.41283 4.44792 4.53652 4.55767 4.59036 4.61999 4.69324 4.73628 4.75963 4.79107 4.86093 4.86892 4.87742 4.93518 4.95347 4.97741 5.02699 5.04092 5.09288 5.12177 5.16276 5.18134 5.24846 5.27927 5.43748 5.47229 5.53599 5.71400 5.75532 6.01132 6.24507 6.30362 6.78145 7.01622 7.45410 7.72040 8.14220 9.14614 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.003442 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.873610 B = 8132.311919 C = 9076.714268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.111 3.889 4 C -0.114 4.114 5 C -0.097 4.097 6 C 0.511 3.489 7 O -0.582 6.582 8 N -0.701 5.701 9 C 0.143 3.857 10 C 0.163 3.837 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.091 4.091 14 C -0.084 4.084 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.134 3.866 18 N -0.610 5.610 19 C -0.215 4.215 20 H 0.053 0.947 21 C -0.023 4.023 22 N -0.958 5.958 23 Si 0.934 3.066 24 H -0.288 1.288 25 H -0.254 1.254 26 H -0.321 1.321 27 C -0.151 4.151 28 C -0.157 4.157 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.028 0.972 50 H 0.041 0.959 51 H 0.255 0.745 52 H 0.094 0.906 53 H 0.115 0.885 54 H 0.105 0.895 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 -1.787 4.501 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.298 3.702 7 O -0.463 6.463 8 N -0.350 5.350 9 C 0.019 3.981 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.165 4.165 13 C -0.129 4.129 14 C -0.086 4.086 15 C -0.179 4.179 16 C -0.193 4.193 17 C 0.009 3.991 18 N -0.335 5.335 19 C -0.345 4.345 20 H 0.071 0.929 21 C -0.218 4.218 22 N -0.604 5.604 23 Si 0.765 3.235 24 H -0.215 1.215 25 H -0.179 1.179 26 H -0.251 1.251 27 C -0.188 4.188 28 C -0.194 4.194 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.046 0.954 50 H 0.060 0.940 51 H 0.065 0.935 52 H 0.112 0.888 53 H 0.133 0.867 54 H 0.123 0.877 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.480 -1.218 4.284 14.197 hybrid contribution 1.159 -0.816 -0.066 1.419 sum -12.321 -2.033 4.218 13.181 Atomic orbital electron populations 1.22918 0.79703 1.03844 1.00607 1.87839 1.21132 1.28047 1.95516 1.21815 0.89987 0.84315 1.00429 1.20920 0.92984 1.04790 0.92778 1.21110 1.02745 0.97279 0.92544 1.20894 0.77099 0.89160 0.83048 1.90586 1.50287 1.25188 1.80253 1.45879 1.56597 1.16580 1.15978 1.21182 0.98641 0.90690 0.87632 1.20948 0.83826 0.96677 0.92761 0.93260 1.21957 1.00610 0.98542 0.95423 1.21411 0.92788 1.01515 0.97139 1.21093 0.96688 0.95689 0.95083 1.21655 0.99334 0.96442 1.00445 1.21790 0.98627 1.01608 0.97269 1.21547 0.92972 0.95284 0.89286 1.44453 1.04778 1.80573 1.03652 1.18580 1.17487 1.10887 0.87550 0.92945 1.25829 0.99240 1.00380 0.96314 1.69932 1.26690 1.39159 1.24667 0.86123 0.78628 0.81801 0.76967 1.21524 1.17859 1.25059 1.23151 1.02315 0.97932 0.95423 1.22809 1.00706 0.92863 1.03058 0.88161 0.93956 0.93010 0.93655 0.91957 0.89461 0.87006 0.75994 0.90999 0.94657 0.92488 0.89730 0.90315 0.91660 0.91663 0.95350 0.93702 0.92163 0.93981 0.90764 0.95397 0.94049 0.93543 0.88770 0.86678 0.87700 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.34 10.49 -148.98 -1.56 -11.90 16 3 C 0.11 2.96 5.72 71.98 0.41 3.37 16 4 C -0.11 -3.41 1.26 -52.18 -0.07 -3.48 16 5 C -0.10 -3.15 5.63 29.85 0.17 -2.98 16 6 C 0.51 19.47 7.68 87.66 0.67 20.14 16 7 O -0.58 -24.93 15.00 -3.03 -0.05 -24.98 16 8 N -0.70 -26.31 4.22 -463.05 -1.95 -28.26 16 9 C 0.14 5.22 4.41 86.38 0.38 5.60 16 10 C 0.16 5.55 2.94 44.97 0.13 5.69 16 11 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 12 C -0.13 -3.50 5.03 30.67 0.15 -3.35 16 13 C -0.09 -2.30 4.71 30.62 0.14 -2.16 16 14 C -0.08 -2.57 0.77 -51.96 -0.04 -2.61 16 15 C -0.12 -3.99 7.99 71.98 0.58 -3.41 16 16 C -0.14 -3.43 8.48 71.98 0.61 -2.82 16 17 C 0.13 5.24 2.91 86.51 0.25 5.50 16 18 N -0.61 -25.45 2.13 -674.39 -1.44 -26.89 16 19 C -0.22 -11.02 7.85 84.03 0.66 -10.36 16 20 H 0.05 3.09 6.18 -2.91 -0.02 3.07 16 21 C -0.02 -1.26 5.28 84.86 0.45 -0.82 16 22 N -0.96 -58.07 13.97 21.65 0.30 -57.76 16 23 Si 0.93 44.53 24.33 68.60 1.67 46.20 16 24 H -0.29 -13.53 6.59 99.48 0.66 -12.87 16 25 H -0.25 -11.23 6.68 99.48 0.66 -10.57 16 26 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 27 C -0.15 -4.01 9.90 30.60 0.30 -3.70 16 28 C -0.16 -4.86 9.10 30.60 0.28 -4.58 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 1.34 7.68 -2.38 -0.02 1.32 16 33 H 0.06 1.44 8.08 -2.39 -0.02 1.43 16 34 H 0.09 2.99 7.94 -2.39 -0.02 2.97 16 35 H 0.11 3.23 7.93 -2.39 -0.02 3.21 16 36 H 0.41 15.10 7.96 -92.71 -0.74 14.36 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 1.55 6.98 -2.39 -0.02 1.53 16 39 H 0.06 1.75 6.34 -2.39 -0.02 1.74 16 40 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.04 1.69 5.97 -2.39 -0.01 1.68 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.03 1.07 6.97 -2.39 -0.02 1.06 16 50 H 0.04 1.88 4.84 -2.39 -0.01 1.87 16 51 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 52 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 53 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 54 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 55 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -66.44 414.69 3.33 -63.11 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.02 Total: 38.76 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.33 Total: 1.72 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.09 Total: -112.91 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.61 Total: -36.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -66.44 3.33 -63.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099074036.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.605 kcal (2) G-P(sol) polarization free energy of solvation -66.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds