Wall clock time and date at job start Tue Mar 31 2020 21:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.50097 * 2 1 4 4 C 1.53045 * 109.49825 * 120.06715 * 2 1 3 5 5 C 1.53039 * 109.53629 * 58.58488 * 4 2 1 6 6 C 1.53191 * 109.31456 * 61.36348 * 5 4 2 7 7 H 1.09000 * 109.58652 * 65.29458 * 6 5 4 8 8 C 1.53003 * 109.59034 * 185.57534 * 6 5 4 9 9 N 1.46497 * 109.47407 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00203 * 180.02562 * 9 8 6 11 11 O 1.21290 * 119.99731 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00183 * 179.97438 * 10 9 8 13 13 C 1.52998 * 109.46936 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.52886 * 55.12582 * 13 12 10 15 15 C 1.53183 * 109.52251 * 175.31621 * 13 12 10 16 16 C 1.53174 * 109.03927 * 176.88445 * 15 13 12 17 17 C 1.53094 * 109.16559 * 303.02151 * 16 15 13 18 18 O 1.42902 * 109.41445 * 57.60194 * 17 16 15 19 19 C 1.42899 * 114.10057 * 298.84421 * 18 17 16 20 20 N 1.46927 * 108.77723 * 305.36531 * 6 5 4 21 21 C 1.36933 * 120.62957 * 233.60812 * 20 6 5 22 22 H 1.08003 * 120.00419 * 30.93995 * 21 20 6 23 23 C 1.38819 * 119.99889 * 210.94607 * 21 20 6 24 24 N 1.31624 * 120.00022 * 14.18495 * 23 21 20 25 25 Si 1.86797 * 120.00107 * 194.18797 * 23 21 20 26 26 H 1.48500 * 109.47022 * 59.99770 * 25 23 21 27 27 H 1.48502 * 109.47318 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47138 * 299.99958 * 25 23 21 29 29 C 1.46924 * 118.73524 * 53.60622 * 20 6 5 30 30 H 1.09008 * 109.47004 * 299.93256 * 1 2 3 31 31 H 1.09003 * 109.47087 * 59.92873 * 1 2 3 32 32 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47289 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47138 * 300.06907 * 3 2 1 35 35 H 1.09006 * 109.46711 * 60.06586 * 3 2 1 36 36 H 1.08992 * 109.45877 * 298.56316 * 4 2 1 37 37 H 1.08999 * 109.45962 * 178.60481 * 4 2 1 38 38 H 1.09005 * 109.49945 * 301.41360 * 5 4 2 39 39 H 1.09001 * 109.52626 * 181.33029 * 5 4 2 40 40 H 1.09000 * 109.46500 * 60.01158 * 8 6 5 41 41 H 1.08998 * 109.46776 * 300.01632 * 8 6 5 42 42 H 0.96996 * 120.00076 * 359.97438 * 9 8 6 43 43 H 1.09002 * 109.46843 * 59.99600 * 12 10 9 44 44 H 1.08996 * 109.47138 * 299.99679 * 12 10 9 45 45 H 1.08997 * 109.53941 * 296.75678 * 15 13 12 46 46 H 1.09005 * 109.54038 * 57.01790 * 15 13 12 47 47 H 1.08991 * 109.52498 * 183.11304 * 16 15 13 48 48 H 1.09009 * 109.57242 * 62.95520 * 16 15 13 49 49 H 1.09007 * 109.47506 * 297.62290 * 17 16 15 50 50 H 1.08994 * 109.49091 * 177.59537 * 17 16 15 51 51 H 1.08992 * 109.48278 * 301.17578 * 19 18 17 52 52 H 1.09008 * 109.48156 * 181.14029 * 19 18 17 53 53 H 0.96995 * 119.99928 * 179.97438 * 24 23 21 54 54 H 1.09008 * 109.58189 * 186.60078 * 29 20 6 55 55 H 1.09003 * 109.70285 * 66.25335 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 1.5029 -2.1555 1.2665 6 6 2.0138 -2.9040 0.0315 7 1 3.0975 -3.0065 0.0886 8 6 1.3701 -4.2906 -0.0307 9 7 1.8608 -5.0044 -1.2122 10 6 1.4271 -6.2534 -1.4734 11 8 0.6308 -6.7867 -0.7300 12 6 1.9314 -6.9874 -2.6891 13 6 1.2878 -8.3740 -2.7511 14 1 0.2028 -8.2735 -2.7260 15 6 1.7083 -9.0761 -4.0460 16 6 1.1218 -10.4911 -4.0603 17 6 1.5924 -11.2429 -2.8125 18 8 1.1957 -10.5207 -1.6450 19 6 1.7522 -9.2077 -1.5539 20 7 1.6514 -2.1384 -1.1691 21 6 0.9633 -2.7318 -2.1935 22 1 0.2675 -3.5312 -1.9852 23 6 1.1602 -2.3061 -3.5001 24 7 2.1908 -1.5423 -3.7952 25 14 -0.0375 -2.8170 -4.8394 26 1 -1.3970 -2.3236 -4.5023 27 1 0.3923 -2.2349 -6.1363 28 1 -0.0604 -4.2981 -4.9444 29 6 2.0412 -0.7241 -1.2494 30 1 -0.3633 0.5128 0.8907 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1306 1.4417 -0.0005 34 1 1.6766 1.9566 -0.8893 35 1 1.6785 1.9559 0.8906 36 1 1.6988 -0.1953 2.1389 37 1 3.1305 -0.7441 1.2355 38 1 0.4131 -2.1352 1.2546 39 1 1.8475 -2.6627 2.1677 40 1 0.2870 -4.1858 -0.0931 41 1 1.6297 -4.8522 0.8667 42 1 2.4974 -4.5778 -1.8069 43 1 3.0146 -7.0924 -2.6267 44 1 1.6720 -6.4256 -3.5863 45 1 1.3323 -8.5168 -4.9026 46 1 2.7958 -9.1317 -4.0940 47 1 1.4615 -11.0172 -4.9523 48 1 0.0331 -10.4351 -4.0629 49 1 2.6785 -11.3348 -2.8316 50 1 1.1438 -12.2361 -2.7956 51 1 2.8401 -9.2729 -1.5565 52 1 1.4184 -8.7346 -0.6303 53 1 2.3285 -1.2451 -4.7081 54 1 1.6006 -0.2737 -2.1389 55 1 3.1272 -0.6445 -1.2992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099340711.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:43 Heat of formation + Delta-G solvation = -102.403721 kcal Electronic energy + Delta-G solvation = -31850.142569 eV Core-core repulsion = 27885.884325 eV Total energy + Delta-G solvation = -3964.258244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.15611 -40.30950 -39.57284 -36.63778 -35.34919 -34.94988 -33.65756 -32.94226 -31.72782 -29.58798 -28.01823 -27.88599 -27.30116 -25.93065 -24.98915 -23.92172 -23.29664 -21.68741 -21.15106 -20.83364 -19.45535 -18.43926 -17.57753 -17.38745 -17.11445 -17.04176 -16.67932 -16.15802 -15.90145 -15.56746 -15.36398 -15.27758 -15.15690 -14.94949 -14.73216 -14.55317 -13.99020 -13.83631 -13.66952 -13.55585 -13.47587 -13.10385 -13.00075 -12.85787 -12.72733 -12.63590 -12.49539 -12.47143 -12.22413 -12.13585 -12.09526 -11.94207 -11.85275 -11.73565 -11.61425 -11.26114 -11.23892 -10.97841 -10.88281 -10.57931 -10.44595 -10.37174 -9.75716 -8.49300 -7.78383 -5.23968 1.41136 1.47602 1.50752 1.79595 2.46054 2.53020 3.00492 3.36181 3.61421 3.73901 3.80287 3.84953 4.02002 4.03326 4.05030 4.12014 4.20764 4.28566 4.34276 4.38226 4.46314 4.53613 4.55834 4.59332 4.70391 4.72180 4.75007 4.78926 4.86959 4.88576 4.94413 4.96515 4.97998 5.06248 5.08267 5.10285 5.11135 5.14374 5.17599 5.26367 5.29026 5.40216 5.40457 5.50565 5.55361 5.61006 5.71542 5.76471 5.83392 5.90434 6.30670 6.48847 6.80020 7.24410 7.43717 7.93907 8.47506 9.25429 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003303 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.572538 B = 8475.185932 C = 9797.820376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.162 3.838 7 H 0.030 0.970 8 C 0.141 3.859 9 N -0.696 5.696 10 C 0.502 3.498 11 O -0.590 6.590 12 C -0.130 4.130 13 C -0.100 4.100 14 H 0.056 0.944 15 C -0.118 4.118 16 C -0.152 4.152 17 C 0.050 3.950 18 O -0.407 6.407 19 C 0.067 3.933 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.059 0.941 23 C -0.029 4.029 24 N -0.923 5.923 25 Si 0.931 3.069 26 H -0.295 1.295 27 H -0.297 1.297 28 H -0.276 1.276 29 C 0.196 3.804 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.411 0.589 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.060 0.940 52 H 0.086 0.914 53 H 0.246 0.754 54 H 0.048 0.952 55 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -8.416 4.008 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.165 4.165 6 C 0.056 3.944 7 H 0.048 0.952 8 C 0.016 3.984 9 N -0.345 5.345 10 C 0.290 3.710 11 O -0.472 6.472 12 C -0.169 4.169 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.190 4.190 17 C -0.026 4.026 18 O -0.326 6.326 19 C -0.009 4.009 20 N -0.318 5.318 21 C -0.358 4.358 22 H 0.076 0.924 23 C -0.225 4.225 24 N -0.569 5.569 25 Si 0.762 3.238 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.202 1.202 29 C 0.071 3.929 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.135 0.865 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.078 0.922 52 H 0.104 0.896 53 H 0.056 0.944 54 H 0.066 0.934 55 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 2.962 -8.801 4.506 10.321 hybrid contribution -0.434 0.542 -1.715 1.850 sum 2.528 -8.259 2.791 9.077 Atomic orbital electron populations 1.21619 0.95126 1.00917 0.99775 1.21160 0.95759 0.95491 0.97013 1.21704 1.00564 0.95012 1.01327 1.21383 0.99676 0.94952 0.96822 1.21957 1.00852 0.96364 0.97279 1.20847 0.95889 0.89453 0.88249 0.95196 1.21195 0.97894 0.91855 0.87431 1.46070 1.46246 1.14499 1.27724 1.21068 0.80993 0.81761 0.87214 1.90604 1.36525 1.68367 1.51732 1.21665 1.03304 0.95733 0.96229 1.21441 1.00245 0.93354 0.96878 0.92584 1.21684 1.01876 0.95906 0.96048 1.22175 1.01188 0.96093 0.99522 1.22818 0.99915 0.95577 0.84256 1.87922 1.73037 1.27808 1.43857 1.22733 0.97266 0.82110 0.98792 1.44164 1.65297 1.06200 1.16136 1.19089 1.15211 1.16232 0.85300 0.92375 1.25397 0.97622 1.01168 0.98361 1.70099 1.28364 1.40234 1.18217 0.85909 0.79627 0.78251 0.80013 1.22254 1.22309 1.20183 1.20572 0.94365 0.83392 0.94608 0.92264 0.95288 0.93586 0.93009 0.94015 0.91372 0.90954 0.92717 0.92331 0.90395 0.94075 0.91317 0.75202 0.86541 0.88718 0.91177 0.89916 0.88456 0.92311 0.91899 0.87701 0.92153 0.89587 0.94421 0.93359 0.98707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 7.98 71.98 0.57 -3.43 16 2 C -0.09 -3.14 0.77 -52.10 -0.04 -3.18 16 3 C -0.13 -3.75 8.48 71.98 0.61 -3.14 16 4 C -0.09 -2.64 4.71 30.62 0.14 -2.49 16 5 C -0.13 -3.79 5.03 30.67 0.15 -3.64 16 6 C 0.16 5.85 3.00 44.98 0.14 5.98 16 7 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.14 5.09 4.43 86.38 0.38 5.47 16 9 N -0.70 -25.31 3.86 -463.06 -1.79 -27.10 16 10 C 0.50 17.91 7.56 87.66 0.66 18.58 16 11 O -0.59 -24.37 13.97 -3.06 -0.04 -24.41 16 12 C -0.13 -3.66 5.18 29.85 0.15 -3.50 16 13 C -0.10 -2.73 2.04 -10.70 -0.02 -2.75 16 14 H 0.06 1.86 7.96 -2.39 -0.02 1.84 16 15 C -0.12 -2.45 5.31 30.71 0.16 -2.28 16 16 C -0.15 -2.81 6.14 30.68 0.19 -2.62 16 17 C 0.05 0.98 6.84 72.01 0.49 1.47 16 18 O -0.41 -11.48 10.77 -148.98 -1.60 -13.08 16 19 C 0.07 1.88 5.84 72.01 0.42 2.30 16 20 N -0.59 -25.87 2.41 -675.21 -1.63 -27.49 16 21 C -0.23 -11.00 7.01 84.04 0.59 -10.41 16 22 H 0.06 2.94 5.85 -2.91 -0.02 2.92 16 23 C -0.03 -1.48 4.96 84.86 0.42 -1.06 16 24 N -0.92 -49.63 11.23 21.65 0.24 -49.39 16 25 Si 0.93 42.91 29.58 68.60 2.03 44.94 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 C 0.20 8.55 3.95 86.36 0.34 8.89 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.74 5.97 -2.39 -0.01 1.73 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.88 6.34 -2.38 -0.02 1.87 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.69 7.39 -2.39 -0.02 1.67 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.41 15.57 7.44 -92.71 -0.69 14.88 16 43 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 50 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 51 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.09 2.88 6.01 -2.38 -0.01 2.87 16 53 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 54 H 0.05 2.46 6.19 -2.38 -0.01 2.45 16 55 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -60.31 406.68 2.74 -57.56 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.16 Total: 34.78 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.37 Total: 4.19 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -3.17 Total: -103.98 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.65 Total: -37.49 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -60.31 2.74 -57.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099340711.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.839 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds