Wall clock time and date at job start Tue Mar 31 2020 20:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48505 * 109.47053 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47205 * 119.99867 * 3 2 1 6 6 H 1.48499 * 109.46877 * 239.99780 * 3 2 1 7 7 C 1.38808 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00586 * 162.64909 * 7 2 1 9 9 N 1.36940 * 119.99786 * 342.64662 * 7 2 1 10 10 C 1.46923 * 120.62812 * 152.04325 * 9 7 2 11 11 C 1.53631 * 108.54036 * 126.37121 * 10 9 7 12 12 C 1.53038 * 109.24213 * 54.85570 * 11 10 9 13 13 H 1.08997 * 109.45239 * 58.52744 * 12 11 10 14 14 N 1.46504 * 109.45612 * 178.48890 * 12 11 10 15 15 C 1.34775 * 119.99908 * 275.06643 * 14 12 11 16 16 O 1.21276 * 120.00097 * 359.97438 * 15 14 12 17 17 C 1.50710 * 119.99619 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.46715 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46586 * 179.97438 * 18 17 15 20 20 C 1.54238 * 108.90032 * 296.39596 * 19 18 17 21 21 C 1.50545 * 108.48736 * 159.17899 * 20 19 18 22 22 C 1.54065 * 112.41482 * 94.26454 * 21 20 19 23 23 C 1.54065 * 112.81805 * 318.28240 * 22 21 20 24 24 C 1.50469 * 112.49741 * 318.28306 * 23 22 21 25 25 C 1.45539 * 108.89187 * 173.60530 * 19 18 17 26 26 C 1.53041 * 109.53719 * 298.50741 * 12 11 10 27 27 H 1.09001 * 109.52423 * 301.40203 * 26 12 11 28 28 O 1.42895 * 109.49512 * 181.31909 * 26 12 11 29 29 C 1.46928 * 120.62959 * 332.32286 * 9 7 2 30 30 H 0.97006 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.59145 * 246.19919 * 10 9 7 32 32 H 1.08998 * 109.59312 * 6.63045 * 10 9 7 33 33 H 1.08994 * 109.63234 * 294.85668 * 11 10 9 34 34 H 1.09007 * 109.45605 * 174.74083 * 11 10 9 35 35 H 0.97006 * 119.99637 * 95.07189 * 14 12 11 36 36 H 1.09001 * 109.46902 * 299.99742 * 17 15 14 37 37 H 1.09000 * 109.46996 * 60.00016 * 17 15 14 38 38 H 1.09001 * 109.47245 * 299.99556 * 18 17 15 39 39 H 1.08997 * 109.46856 * 60.00167 * 18 17 15 40 40 H 1.09000 * 108.87042 * 55.00329 * 19 18 17 41 41 H 1.09005 * 109.62587 * 278.98419 * 20 19 18 42 42 H 1.09005 * 109.62376 * 39.55256 * 20 19 18 43 43 H 1.09000 * 108.92392 * 333.51328 * 21 20 19 44 44 H 1.08995 * 108.83938 * 214.96328 * 21 20 19 45 45 H 1.09001 * 108.82110 * 197.41648 * 22 21 20 46 46 H 1.09009 * 108.81377 * 79.14192 * 22 21 20 47 47 H 1.09004 * 108.88091 * 197.50347 * 23 22 21 48 48 H 1.09002 * 108.79630 * 79.00579 * 23 22 21 49 49 H 1.09003 * 109.62937 * 334.44425 * 24 23 22 50 50 H 1.08998 * 109.63304 * 213.86672 * 24 23 22 51 51 H 1.09006 * 108.89470 * 303.43977 * 25 19 18 52 52 H 1.08999 * 108.89628 * 61.93326 * 25 19 18 53 53 H 0.96702 * 114.00352 * 180.16637 * 28 26 12 54 54 H 1.08999 * 109.58917 * 353.37583 * 29 9 7 55 55 H 1.09008 * 109.58452 * 113.80220 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 1.8157 -3.6540 -0.1835 11 6 2.0740 -4.6096 0.9914 12 6 0.8183 -4.6890 1.8625 13 1 -0.0207 -5.0356 1.2591 14 7 1.0472 -5.6269 2.9644 15 6 0.8468 -6.9466 2.7787 16 8 0.4764 -7.3577 1.6995 17 6 1.0818 -7.9113 3.9125 18 6 0.7830 -9.3357 3.4403 19 6 1.0222 -10.3151 4.5911 20 6 2.5152 -10.2778 4.9767 21 6 2.6599 -10.8107 6.3772 22 6 2.9873 -12.3160 6.4022 23 6 2.1736 -13.1215 5.3713 24 6 0.7351 -12.6850 5.3052 25 6 0.5909 -11.6422 4.1778 26 6 0.5005 -3.3036 2.4298 27 1 1.3487 -2.9454 3.0131 28 8 -0.6543 -3.3847 3.2676 29 6 0.2277 -2.3339 1.2756 30 1 -0.4851 0.8401 -0.0004 31 1 1.0404 -4.0662 -0.8295 32 1 2.7345 -3.5170 -0.7537 33 1 2.9079 -4.2395 1.5879 34 1 2.3136 -5.6011 0.6071 35 1 1.3430 -5.2979 3.8277 36 1 2.1206 -7.8457 4.2359 37 1 0.4252 -7.6599 4.7454 38 1 -0.2559 -9.4010 3.1171 39 1 1.4392 -9.5873 2.6071 40 1 0.4280 -10.0022 5.4496 41 1 3.0872 -10.8977 4.2863 42 1 2.8779 -9.2507 4.9374 43 1 1.7279 -10.6436 6.9171 44 1 3.4602 -10.2674 6.8796 45 1 2.7764 -12.7053 7.3982 46 1 4.0489 -12.4484 6.1930 47 1 2.2097 -14.1772 5.6405 48 1 2.6267 -12.9930 4.3883 49 1 0.4437 -12.2388 6.2561 50 1 0.1008 -13.5453 5.0917 51 1 -0.4545 -11.5945 3.8728 52 1 1.1914 -11.9590 3.3251 53 1 -0.9156 -2.5405 3.6602 54 1 0.0984 -1.3254 1.6684 55 1 -0.6745 -2.6405 0.7462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099925872.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:59 Heat of formation + Delta-G solvation = -122.372814 kcal Electronic energy + Delta-G solvation = -30324.720609 eV Core-core repulsion = 26359.596440 eV Total energy + Delta-G solvation = -3965.124169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.16534 -40.15871 -39.29711 -36.89347 -35.84003 -35.32192 -33.94909 -33.02828 -31.79248 -30.80797 -30.39887 -27.33023 -26.32784 -25.41044 -24.21575 -23.61890 -22.84379 -21.38215 -21.07060 -20.89075 -20.04050 -18.94957 -18.11866 -17.93507 -17.36313 -16.70619 -16.64795 -16.50172 -15.69737 -15.64849 -15.51937 -15.33600 -15.06338 -14.94744 -14.61906 -14.47977 -14.17916 -13.83947 -13.74354 -13.54251 -13.39301 -13.35810 -13.08740 -12.98631 -12.85457 -12.71769 -12.62021 -12.56147 -12.10887 -12.04241 -11.97797 -11.89517 -11.49327 -11.40114 -11.35040 -11.23743 -11.15495 -11.09510 -11.01156 -10.91353 -10.67064 -10.60189 -9.99571 -8.77720 -7.91522 -5.39127 1.49117 1.50082 1.57769 1.73604 2.24786 2.49144 3.11160 3.25984 3.62799 3.66093 3.75749 3.83225 3.92737 4.03686 4.05438 4.16310 4.20330 4.30243 4.38995 4.40573 4.42983 4.44589 4.47590 4.50006 4.56991 4.63350 4.68784 4.76197 4.89912 4.93386 4.95537 4.99674 5.02770 5.03052 5.14508 5.16406 5.20188 5.25466 5.31783 5.33975 5.37433 5.42024 5.43186 5.46047 5.53346 5.55809 5.57749 5.62577 5.66684 5.68494 6.32039 6.65746 6.81895 7.08795 7.36252 7.76209 8.29616 9.14915 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.001905 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.662969 B =14694.815894 C =14792.810309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.972 3.028 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.169 3.831 13 H 0.050 0.950 14 N -0.707 5.707 15 C 0.504 3.496 16 O -0.593 6.593 17 C -0.130 4.130 18 C -0.097 4.097 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.115 4.115 26 C 0.093 3.907 27 H 0.067 0.933 28 O -0.573 6.573 29 C 0.156 3.844 30 H 0.252 0.748 31 H 0.006 0.994 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.053 0.947 53 H 0.392 0.608 54 H 0.071 0.929 55 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -21.910 17.298 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.161 4.161 12 C 0.063 3.937 13 H 0.068 0.932 14 N -0.358 5.358 15 C 0.292 3.708 16 O -0.473 6.473 17 C -0.169 4.169 18 C -0.135 4.135 19 C -0.094 4.094 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.152 4.152 26 C 0.032 3.968 27 H 0.085 0.915 28 O -0.380 6.380 29 C 0.029 3.971 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.241 0.759 54 H 0.090 0.910 55 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 5.026 -22.693 16.369 28.429 hybrid contribution -0.051 1.872 -0.270 1.892 sum 4.976 -20.821 16.099 26.785 Atomic orbital electron populations 1.70187 1.06757 1.26200 1.54945 1.25864 0.96044 1.01710 1.00835 0.85285 0.77502 0.78807 0.78492 1.22154 1.19867 1.20315 1.19520 0.93212 0.85594 1.41357 0.90940 1.44265 1.35741 1.02411 1.50437 1.21135 0.97749 0.85766 0.93901 1.22256 0.97057 0.99398 0.97412 1.20594 0.97237 0.87482 0.88341 0.93194 1.45958 1.68502 1.06184 1.15163 1.21566 0.75631 0.83276 0.90296 1.90676 1.48465 1.78667 1.29537 1.21802 1.05866 0.93235 0.95987 1.21415 1.01243 0.92672 0.98156 1.20071 0.97140 0.94648 0.97531 1.21503 0.95178 1.01472 0.97077 1.21333 1.01994 0.95397 0.96768 1.21918 0.99525 0.94947 0.99087 1.21341 0.95436 0.99388 0.99514 1.21290 0.96671 0.98276 0.98787 1.20530 1.00979 0.95191 0.98527 1.22544 0.87928 0.94560 0.91790 0.91497 1.86391 1.47805 1.37875 1.65928 1.21235 0.88245 0.98184 0.89424 0.93891 0.97569 0.91468 0.90588 0.91343 0.75090 0.86261 0.86906 0.93211 0.92938 0.90553 0.92260 0.90960 0.91797 0.91867 0.92046 0.92466 0.92153 0.92736 0.91304 0.91851 0.92827 0.92844 0.75896 0.91025 0.98967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.14 11.19 21.65 0.24 -53.90 16 2 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 3 Si 0.97 43.33 29.59 68.60 2.03 45.36 16 4 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.27 -14.29 9.58 84.03 0.81 -13.48 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.60 -30.03 2.99 -698.24 -2.09 -32.11 16 10 C 0.14 6.04 6.54 86.51 0.57 6.61 16 11 C -0.12 -4.31 5.67 30.82 0.17 -4.13 16 12 C 0.17 6.07 2.11 45.02 0.10 6.16 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 N -0.71 -19.64 4.92 -442.40 -2.18 -21.82 16 15 C 0.50 14.37 7.79 87.66 0.68 15.05 16 16 O -0.59 -22.72 15.64 -3.02 -0.05 -22.77 16 17 C -0.13 -2.31 5.48 29.85 0.16 -2.14 16 18 C -0.10 -1.87 3.89 30.60 0.12 -1.75 16 19 C -0.08 -1.05 1.71 -12.65 -0.02 -1.07 16 20 C -0.12 -1.40 4.91 30.22 0.15 -1.25 16 21 C -0.12 -1.22 5.32 30.16 0.16 -1.06 16 22 C -0.12 -1.21 5.85 31.31 0.18 -1.03 16 23 C -0.12 -1.34 5.32 30.14 0.16 -1.18 16 24 C -0.11 -1.32 5.61 30.20 0.17 -1.15 16 25 C -0.11 -1.64 4.44 28.74 0.13 -1.51 16 26 C 0.09 3.39 3.14 30.67 0.10 3.49 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 O -0.57 -18.86 13.16 -148.98 -1.96 -20.82 16 29 C 0.16 7.41 4.93 86.36 0.43 7.83 16 30 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.41 8.81 8.60 -92.70 -0.80 8.01 16 36 H 0.12 1.54 6.14 -2.39 -0.01 1.52 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.15 8.01 -2.39 -0.02 1.13 16 39 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 40 H 0.08 0.96 7.46 -2.39 -0.02 0.94 16 41 H 0.06 0.81 6.96 -2.38 -0.02 0.80 16 42 H 0.07 0.81 5.82 -2.38 -0.01 0.79 16 43 H 0.06 0.64 6.63 -2.39 -0.02 0.63 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 48 H 0.05 0.69 6.62 -2.39 -0.02 0.67 16 49 H 0.07 0.76 6.98 -2.39 -0.02 0.75 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.05 0.83 8.04 -2.38 -0.02 0.81 16 52 H 0.05 0.84 7.47 -2.39 -0.02 0.82 16 53 H 0.39 10.14 9.08 -74.06 -0.67 9.47 16 54 H 0.07 3.70 6.04 -2.39 -0.01 3.69 16 55 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 Total: -1.00 -69.04 409.25 -0.12 -69.16 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.59 Total: 29.75 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.47 Total: 7.15 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.02 Total: -107.83 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.01 Total: -43.58 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.04 -0.12 -69.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099925872.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.217 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds