Wall clock time and date at job start Tue Mar 31 2020 21:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47166 * 2 1 4 4 C 1.53004 * 109.47166 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46814 * 299.99742 * 4 3 2 6 6 C 1.53000 * 109.47291 * 300.00126 * 5 4 3 7 7 C 1.50704 * 109.47067 * 179.97438 * 5 4 3 8 8 O 1.21280 * 119.99664 * 359.97438 * 7 5 4 9 9 N 1.34769 * 120.00076 * 179.97438 * 7 5 4 10 10 C 1.46499 * 120.00402 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47393 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.51058 * 305.00105 * 11 10 9 13 13 C 1.53292 * 109.50881 * 184.90218 * 11 10 9 14 14 N 1.47156 * 108.38193 * 187.77250 * 13 11 10 15 15 C 1.36939 * 120.98409 * 230.51135 * 14 13 11 16 16 H 1.08001 * 119.99997 * 153.74588 * 15 14 13 17 17 C 1.38806 * 119.99913 * 333.74584 * 15 14 13 18 18 N 1.31617 * 119.99864 * 160.03915 * 17 15 14 19 19 Si 1.86802 * 120.00179 * 340.03891 * 17 15 14 20 20 H 1.48495 * 109.47068 * 91.88769 * 19 17 15 21 21 H 1.48495 * 109.47206 * 211.88919 * 19 17 15 22 22 H 1.48501 * 109.47038 * 331.88908 * 19 17 15 23 23 C 1.47153 * 118.03260 * 50.53634 * 14 13 11 24 24 C 1.53294 * 108.38587 * 309.46377 * 23 14 13 25 25 O 1.42955 * 109.50941 * 65.10622 * 11 10 9 26 26 C 1.53000 * 109.46936 * 59.99911 * 5 4 3 27 27 C 1.52994 * 109.47297 * 299.99742 * 26 5 4 28 28 H 1.08998 * 109.47044 * 300.00497 * 1 2 3 29 29 H 1.09005 * 109.46753 * 59.99924 * 1 2 3 30 30 H 1.08990 * 109.47542 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47044 * 239.99503 * 2 1 3 32 32 H 1.08998 * 109.47544 * 59.99809 * 3 2 1 33 33 H 1.09005 * 109.47346 * 299.99713 * 3 2 1 34 34 H 1.08999 * 109.47077 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47044 * 59.99503 * 4 3 2 36 36 H 1.09001 * 109.47208 * 59.99558 * 6 5 4 37 37 H 1.08993 * 109.47251 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.46798 * 299.99844 * 6 5 4 39 39 H 0.97003 * 119.99837 * 0.02562 * 9 7 5 40 40 H 1.08991 * 109.46907 * 300.00525 * 10 9 7 41 41 H 1.08999 * 109.46583 * 60.00151 * 10 9 7 42 42 H 1.09001 * 109.47362 * 60.00279 * 12 11 10 43 43 H 1.08999 * 109.46551 * 180.02562 * 12 11 10 44 44 H 1.09003 * 109.47461 * 299.99707 * 12 11 10 45 45 H 1.09001 * 109.68407 * 307.49665 * 13 11 10 46 46 H 1.09004 * 109.68589 * 68.01267 * 13 11 10 47 47 H 0.97009 * 120.00063 * 179.97438 * 18 17 15 48 48 H 1.08996 * 109.68434 * 69.18890 * 23 14 13 49 49 H 1.09006 * 109.68205 * 189.73954 * 23 14 13 50 50 H 1.09000 * 109.51681 * 172.22848 * 24 23 14 51 51 H 1.09005 * 109.50930 * 292.32862 * 24 23 14 52 52 H 1.09000 * 109.46965 * 60.00289 * 26 5 4 53 53 H 1.09003 * 109.46509 * 179.97438 * 26 5 4 54 54 H 1.09006 * 109.47318 * 180.02562 * 27 26 5 55 55 H 1.09000 * 109.47560 * 300.00182 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0805 0.7210 1.2483 6 6 3.5710 1.4421 2.4979 7 6 5.5876 0.7204 1.2475 8 8 6.1936 1.2449 0.3372 9 7 6.2618 0.1371 2.2581 10 6 7.7268 0.1360 2.2570 11 6 8.2372 -0.5853 3.5061 12 6 7.6291 0.0598 4.7531 13 6 9.7653 -0.4808 3.5690 14 7 10.2440 -1.3349 4.6676 15 6 11.1055 -0.8488 5.6145 16 1 11.1250 -1.2857 6.6020 17 6 11.9537 0.2056 5.3051 18 7 12.4846 0.9277 6.2690 19 14 12.3417 0.5996 3.5208 20 1 11.3752 1.6071 3.0150 21 1 13.7201 1.1429 3.4223 22 1 12.2380 -0.6380 2.7067 23 6 9.7699 -2.7271 4.7181 24 6 8.2416 -2.7221 4.5992 25 8 7.8606 -1.9631 3.4491 26 6 3.5704 -0.7214 1.2484 27 6 2.0405 -0.7214 1.2490 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9334 2.4701 -0.0011 35 1 3.9330 0.9287 -0.8908 36 1 2.4810 1.4422 2.4983 37 1 3.9350 0.9285 3.3876 38 1 3.9344 2.4698 2.4978 39 1 5.7770 -0.2827 2.9859 40 1 8.0890 -0.3786 1.3672 41 1 8.0908 1.1634 2.2560 42 1 6.5427 -0.0164 4.7085 43 1 7.9936 -0.4543 5.6424 44 1 7.9183 1.1099 4.7967 45 1 10.1956 -0.8194 2.6265 46 1 10.0553 0.5535 3.7543 47 1 13.0777 1.6643 6.0528 48 1 10.2006 -3.2919 3.8914 49 1 10.0630 -3.1805 5.6651 50 1 7.8810 -3.7455 4.4958 51 1 7.8084 -2.2719 5.4924 52 1 3.9335 -1.2352 0.3582 53 1 3.9345 -1.2355 2.1380 54 1 1.6771 -1.7491 1.2495 55 1 1.6775 -0.2077 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108429579.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:55 Heat of formation + Delta-G solvation = -99.409830 kcal Electronic energy + Delta-G solvation = -31884.151981 eV Core-core repulsion = 27920.023562 eV Total energy + Delta-G solvation = -3964.128419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.78713 -40.81632 -39.12919 -36.71495 -36.04794 -34.63452 -33.65791 -33.12907 -31.67799 -29.99224 -29.20882 -28.17357 -27.51583 -26.33747 -25.32756 -23.59870 -23.33677 -22.51529 -21.19689 -20.67147 -19.64050 -19.06586 -18.32468 -17.73641 -17.10317 -17.00984 -16.40995 -16.23265 -15.90013 -15.68862 -15.57462 -15.39868 -15.29853 -15.00513 -14.80434 -14.51749 -14.27538 -14.06884 -13.96284 -13.69788 -13.46534 -13.39746 -13.18929 -13.08692 -13.05109 -12.84323 -12.72706 -12.63977 -12.40000 -12.29474 -12.22089 -12.03014 -11.86349 -11.80485 -11.64868 -11.58886 -11.28054 -11.07021 -11.04883 -10.86968 -10.62856 -10.48890 -10.14704 -8.96965 -8.22175 -5.53997 1.22236 1.35283 1.41454 1.61663 2.10074 2.33826 2.65133 2.96860 3.20608 3.53661 3.62943 3.74373 3.76262 3.83011 3.87960 4.11185 4.14951 4.19726 4.27625 4.28514 4.40212 4.42674 4.46026 4.50160 4.56423 4.59621 4.60964 4.65655 4.70203 4.72443 4.80043 4.82255 4.87024 4.91163 5.01857 5.03626 5.04996 5.06215 5.11418 5.14217 5.16237 5.20305 5.29134 5.32653 5.35870 5.43137 5.46990 5.50204 5.67629 5.76714 6.06779 6.22648 6.52216 6.79573 7.21502 7.52263 7.93725 8.97033 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002801 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.301972 B = 9993.451052 C =10603.726400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.109 4.109 4 C -0.093 4.093 5 C -0.067 4.067 6 C -0.143 4.143 7 C 0.514 3.486 8 O -0.589 6.589 9 N -0.704 5.704 10 C 0.141 3.859 11 C 0.104 3.896 12 C -0.158 4.158 13 C 0.102 3.898 14 N -0.616 5.616 15 C -0.240 4.240 16 H 0.065 0.935 17 C -0.026 4.026 18 N -0.950 5.950 19 Si 0.929 3.071 20 H -0.276 1.276 21 H -0.309 1.309 22 H -0.268 1.268 23 C 0.104 3.896 24 C 0.050 3.950 25 O -0.376 6.376 26 C -0.105 4.105 27 C -0.108 4.108 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.027 0.973 46 H 0.061 0.939 47 H 0.262 0.738 48 H 0.032 0.968 49 H 0.076 0.924 50 H 0.125 0.875 51 H 0.060 0.940 52 H 0.053 0.947 53 H 0.077 0.923 54 H 0.074 0.926 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.313 -3.964 -8.828 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.131 4.131 5 C -0.070 4.070 6 C -0.200 4.200 7 C 0.302 3.698 8 O -0.469 6.469 9 N -0.357 5.357 10 C 0.015 3.985 11 C 0.062 3.938 12 C -0.215 4.215 13 C -0.024 4.024 14 N -0.341 5.341 15 C -0.370 4.370 16 H 0.082 0.918 17 C -0.222 4.222 18 N -0.596 5.596 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.238 1.238 22 H -0.193 1.193 23 C -0.021 4.021 24 C -0.027 4.027 25 O -0.296 6.296 26 C -0.143 4.143 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.094 0.906 50 H 0.143 0.857 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.096 0.904 54 H 0.093 0.907 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.859 -3.589 -9.553 28.732 hybrid contribution 1.549 0.453 -0.301 1.642 sum -25.310 -3.136 -9.854 27.341 Atomic orbital electron populations 1.21795 0.94136 1.02064 1.02128 1.21158 0.96178 0.95577 0.98352 1.21639 0.92986 0.97100 1.02887 1.21332 0.96686 0.99564 0.95537 1.20779 0.88022 0.99097 0.99135 1.21999 1.03486 0.99793 0.94727 1.21361 0.91343 0.76440 0.80632 1.90668 1.71588 1.47110 1.37546 1.45845 1.06041 1.58055 1.25727 1.21095 0.81257 0.99497 0.96603 1.21924 0.93604 0.83124 0.95113 1.22156 1.01078 1.00827 0.97440 1.21910 0.93753 0.95659 0.91064 1.44413 1.52528 1.07982 1.29162 1.18843 1.12393 1.14220 0.91496 0.91762 1.25732 0.98281 0.98475 0.99688 1.69917 1.36062 1.20582 1.33030 0.86212 0.76125 0.78261 0.83483 1.20312 1.23811 1.19307 1.21888 0.94867 0.84526 1.00780 1.23159 0.94011 0.96915 0.88622 1.87872 1.79529 1.19562 1.42602 1.21578 0.97597 0.92542 1.02535 1.21616 0.92991 1.01368 0.98580 0.91974 0.92726 0.92320 0.92224 0.90326 0.91502 0.92860 0.93293 0.88619 0.91130 0.92965 0.74818 0.92009 0.91152 0.89837 0.91929 0.92609 0.95500 0.92081 0.92897 0.94947 0.90595 0.85702 0.92150 0.92823 0.90426 0.90728 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.19 71.98 0.66 -0.59 16 2 C -0.09 -1.07 2.72 -10.79 -0.03 -1.10 16 3 C -0.11 -1.41 4.93 30.59 0.15 -1.26 16 4 C -0.09 -1.81 4.02 30.60 0.12 -1.68 16 5 C -0.07 -1.24 0.61 -52.93 -0.03 -1.28 16 6 C -0.14 -2.00 7.68 71.98 0.55 -1.45 16 7 C 0.51 13.95 6.48 87.66 0.57 14.52 16 8 O -0.59 -21.33 15.98 -3.03 -0.05 -21.38 16 9 N -0.70 -17.88 4.98 -463.08 -2.31 -20.19 16 10 C 0.14 4.46 4.85 86.38 0.42 4.87 16 11 C 0.10 3.45 0.78 -10.69 -0.01 3.44 16 12 C -0.16 -4.80 7.87 71.98 0.57 -4.24 16 13 C 0.10 4.36 3.05 86.35 0.26 4.62 16 14 N -0.62 -28.00 2.35 -697.53 -1.64 -29.64 16 15 C -0.24 -13.12 10.10 84.03 0.85 -12.27 16 16 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 17 C -0.03 -1.52 5.26 84.86 0.45 -1.07 16 18 N -0.95 -58.63 13.97 21.65 0.30 -58.32 16 19 Si 0.93 46.99 24.28 68.60 1.67 48.66 16 20 H -0.28 -13.34 6.58 99.48 0.65 -12.68 16 21 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 22 H -0.27 -13.30 6.54 99.48 0.65 -12.65 16 23 C 0.10 3.76 6.74 86.35 0.58 4.34 16 24 C 0.05 1.41 6.60 72.08 0.48 1.88 16 25 O -0.38 -11.61 10.17 -148.98 -1.52 -13.12 16 26 C -0.10 -1.57 4.63 30.59 0.14 -1.42 16 27 C -0.11 -1.14 4.93 30.59 0.15 -0.99 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.10 0.93 4.81 -2.39 -0.01 0.92 16 37 H 0.07 0.85 7.56 -2.39 -0.02 0.84 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.41 8.42 5.83 -92.71 -0.54 7.88 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.08 1.91 6.58 -2.39 -0.02 1.89 16 43 H 0.06 2.14 6.12 -2.39 -0.01 2.13 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 46 H 0.06 2.87 4.60 -2.38 -0.01 2.85 16 47 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 48 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.08 2.65 7.96 -2.38 -0.02 2.64 16 50 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.06 1.66 6.26 -2.38 -0.01 1.64 16 52 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.08 1.04 7.56 -2.39 -0.02 1.02 16 54 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 55 H 0.08 0.68 6.43 -2.39 -0.02 0.66 16 Total: -1.00 -70.17 397.81 2.55 -67.61 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.22 Total: 20.07 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.88 Total: 6.31 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.64 Total: -108.15 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.56 Total: -34.50 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Total: -70.17 2.55 -67.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108429579.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.795 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds