Wall clock time and date at job start Tue Mar 31 2020 20:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00357 * 2 1 4 4 H 1.48500 * 109.46952 * 240.00625 * 3 2 1 5 5 H 1.48498 * 109.46653 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47203 * 119.99913 * 3 2 1 7 7 C 1.38814 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00140 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00050 * 174.06906 * 9 7 2 11 11 C 1.53002 * 109.47196 * 300.07160 * 10 9 7 12 12 N 1.46504 * 109.47472 * 305.25278 * 11 10 9 13 13 C 1.34775 * 120.00075 * 175.99257 * 12 11 10 14 14 O 1.21278 * 119.99846 * 359.72212 * 13 12 11 15 15 C 1.50699 * 119.99566 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.46746 * 179.72203 * 15 13 12 17 17 C 1.42905 * 113.99895 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47045 * 179.97438 * 17 16 15 19 19 C 1.54265 * 110.03772 * 292.91406 * 18 17 16 20 20 C 1.54959 * 104.15920 * 217.13658 * 19 18 17 21 21 C 1.54888 * 102.78110 * 37.88785 * 20 19 18 22 22 C 1.53880 * 110.03293 * 175.69035 * 18 17 16 23 23 C 1.52998 * 109.47253 * 60.07367 * 10 9 7 24 24 C 1.52997 * 109.46793 * 60.00101 * 23 10 9 25 25 C 1.52996 * 109.47398 * 60.00259 * 24 23 10 26 26 C 1.52998 * 109.46936 * 299.99653 * 25 24 23 27 27 C 1.52998 * 109.47016 * 180.02562 * 10 9 7 28 28 H 0.97004 * 119.99700 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99569 * 354.07224 * 9 7 2 30 30 H 1.08997 * 109.47407 * 185.24611 * 11 10 9 31 31 H 1.09003 * 109.46895 * 65.25292 * 11 10 9 32 32 H 0.97004 * 119.99635 * 355.98813 * 12 11 10 33 33 H 1.09004 * 109.47051 * 299.71653 * 15 13 12 34 34 H 1.08996 * 109.47476 * 59.72051 * 15 13 12 35 35 H 1.08997 * 109.47210 * 300.00202 * 17 16 15 36 36 H 1.09001 * 109.46433 * 60.00181 * 17 16 15 37 37 H 1.09007 * 110.01464 * 54.30739 * 18 17 16 38 38 H 1.09008 * 110.48321 * 335.78425 * 19 18 17 39 39 H 1.08998 * 110.48679 * 98.42409 * 19 18 17 40 40 H 1.08993 * 110.71993 * 279.56842 * 20 19 18 41 41 H 1.09002 * 110.92481 * 156.29236 * 20 19 18 42 42 H 1.09001 * 110.49039 * 203.40606 * 21 20 19 43 43 H 1.08997 * 110.60359 * 80.81543 * 21 20 19 44 44 H 1.08993 * 110.03168 * 238.57204 * 22 18 17 45 45 H 1.09004 * 110.02639 * 359.95890 * 22 18 17 46 46 H 1.09003 * 109.47201 * 180.02562 * 23 10 9 47 47 H 1.08997 * 109.47167 * 299.99914 * 23 10 9 48 48 H 1.09001 * 109.47135 * 299.99083 * 24 23 10 49 49 H 1.09002 * 109.46635 * 180.02562 * 24 23 10 50 50 H 1.09001 * 109.47004 * 179.97438 * 25 24 23 51 51 H 1.08998 * 109.47457 * 59.99890 * 25 24 23 52 52 H 1.08998 * 109.47241 * 300.00369 * 26 25 24 53 53 H 1.08997 * 109.47167 * 180.02562 * 26 25 24 54 54 H 1.09002 * 109.47416 * 59.99663 * 27 10 9 55 55 H 1.08998 * 109.47260 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0522 -3.6534 -0.1300 11 6 2.8183 -3.6674 -1.4543 12 7 1.8911 -3.4043 -2.5577 13 6 2.3576 -3.2885 -3.8169 14 8 3.5455 -3.3970 -4.0358 15 6 1.4038 -3.0173 -4.9517 16 8 2.1338 -2.9314 -6.1772 17 6 1.3186 -2.6756 -7.3227 18 6 2.2007 -2.6037 -8.5706 19 6 3.1153 -1.3634 -8.5007 20 6 3.1809 -0.8578 -9.9640 21 6 1.7386 -1.0989 -10.4748 22 6 1.3260 -2.4361 -9.8255 23 6 3.0382 -3.7975 1.0311 24 6 2.2720 -3.7836 2.3553 25 6 1.2790 -4.9472 2.3822 26 6 0.2930 -4.8031 1.2212 27 6 1.0592 -4.8170 -0.1019 28 1 -0.4850 0.8401 0.0004 29 1 0.3594 -2.3903 0.0869 30 1 3.2830 -4.6432 -1.5951 31 1 3.5893 -2.8971 -1.4362 32 1 0.9414 -3.3136 -2.3820 33 1 0.6776 -3.8275 -5.0174 34 1 0.8834 -2.0766 -4.7721 35 1 0.5909 -3.4789 -7.4374 36 1 0.7961 -1.7279 -7.1923 37 1 2.8036 -3.5081 -8.6539 38 1 2.6779 -0.6029 -7.8537 39 1 4.1083 -1.6411 -8.1473 40 1 3.8979 -1.4410 -10.5418 41 1 3.4306 0.2026 -9.9987 42 1 1.7278 -1.1832 -11.5615 43 1 1.0771 -0.2964 -10.1488 44 1 1.5051 -3.2585 -10.5180 45 1 0.2730 -2.4067 -9.5453 46 1 3.5792 -4.7388 0.9337 47 1 3.7457 -2.9686 1.0119 48 1 1.7315 -2.8421 2.4525 49 1 2.9745 -3.8858 3.1825 50 1 0.7335 -4.9375 3.3259 51 1 1.8196 -5.8887 2.2852 52 1 -0.2476 -3.8617 1.3183 53 1 -0.4148 -5.6318 1.2406 54 1 0.3561 -4.7148 -0.9285 55 1 1.5999 -5.7585 -0.1985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115575953.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:33 Heat of formation + Delta-G solvation = -121.314873 kcal Electronic energy + Delta-G solvation = -30651.675310 eV Core-core repulsion = 26686.597017 eV Total energy + Delta-G solvation = -3965.078293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.02130 -40.05556 -39.45378 -37.77590 -35.86218 -35.04747 -32.89594 -31.60990 -31.52602 -30.41794 -29.59715 -28.85295 -26.20465 -25.68285 -25.09052 -23.45794 -21.90701 -21.56544 -21.42778 -20.57355 -19.80285 -19.04090 -18.27822 -17.87834 -17.32732 -16.91661 -16.60700 -16.17723 -16.10064 -15.95678 -15.64511 -15.48871 -15.27232 -14.93976 -14.59038 -14.36808 -14.22163 -14.20051 -13.65053 -13.38943 -13.32106 -13.22940 -12.91986 -12.84201 -12.76705 -12.59519 -12.49744 -12.16516 -12.07885 -11.99202 -11.92324 -11.90969 -11.71868 -11.68190 -11.51033 -11.33348 -11.21000 -11.12940 -10.91122 -10.69501 -10.66716 -10.64044 -9.90799 -8.89836 -7.88140 -5.11523 1.43563 1.45986 1.49737 1.63994 1.96676 2.57742 3.03662 3.44919 3.68132 3.70680 3.81313 3.82966 3.90919 3.92979 4.04295 4.14546 4.17640 4.24931 4.35340 4.40163 4.41279 4.49019 4.49542 4.55624 4.66640 4.67438 4.74675 4.77017 4.77737 4.82528 4.83756 4.89080 4.92474 4.97766 5.05190 5.07827 5.08652 5.19721 5.23404 5.23542 5.33286 5.45310 5.46363 5.46817 5.49990 5.52159 5.58227 5.60400 5.70293 5.80691 6.10995 6.35337 6.67392 7.31911 7.44695 8.17378 8.44120 9.33841 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.002758 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.602043 B =10149.306284 C =11626.993900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.941 3.059 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.207 4.207 8 H 0.058 0.942 9 N -0.707 5.707 10 C 0.190 3.810 11 C 0.124 3.876 12 N -0.691 5.691 13 C 0.504 3.496 14 O -0.585 6.585 15 C 0.051 3.949 16 O -0.392 6.392 17 C 0.061 3.939 18 C -0.091 4.091 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.113 4.113 27 C -0.108 4.108 28 H 0.247 0.753 29 H 0.378 0.622 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.409 0.591 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.041 0.959 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.044 0.956 53 H 0.076 0.924 54 H 0.064 0.936 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 -11.103 -12.788 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.774 3.226 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.339 4.339 8 H 0.076 0.924 9 N -0.348 5.348 10 C 0.099 3.901 11 C -0.002 4.002 12 N -0.342 5.342 13 C 0.290 3.710 14 O -0.465 6.465 15 C -0.029 4.029 16 O -0.311 6.311 17 C -0.015 4.015 18 C -0.110 4.110 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.213 0.787 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.245 0.755 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.063 0.937 53 H 0.095 0.905 54 H 0.082 0.918 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.121 -11.075 -12.954 17.080 hybrid contribution -0.170 1.779 0.473 1.849 sum -1.291 -9.295 -12.481 15.616 Atomic orbital electron populations 1.69722 1.05556 1.25297 1.60271 1.25080 0.95967 0.99311 1.04902 0.85698 0.77555 0.82008 0.77385 1.22261 1.22245 1.21184 1.19135 0.90566 0.85151 1.39079 0.92425 1.42437 1.05806 0.99819 1.86736 1.20042 0.92284 0.87021 0.90767 1.21733 0.92159 0.98880 0.87411 1.45582 1.12108 1.71059 1.05491 1.20809 0.89105 0.76333 0.84722 1.90645 1.18744 1.52193 1.84935 1.22211 0.93200 1.03848 0.83631 1.87975 1.35093 1.93271 1.14808 1.22955 0.93439 1.00533 0.84540 1.21792 0.96862 0.98978 0.93372 1.22385 0.99070 0.96907 0.97487 1.22536 0.97813 1.01055 0.94828 1.22370 0.95817 0.97098 1.00720 1.22123 0.99463 0.98489 0.94877 1.21812 0.97726 1.00430 0.95663 1.21308 0.98002 0.98892 0.96181 1.21454 0.96903 0.98048 0.98124 1.21425 0.97849 1.01389 0.94351 1.21658 0.97683 0.97173 0.98078 0.94425 0.78747 0.91665 0.95263 0.75477 0.87079 0.89518 0.91149 0.92665 0.91063 0.92808 0.93338 0.91051 0.91404 0.90157 0.91553 0.90261 0.90537 0.90885 0.94593 0.93984 0.92440 0.92092 0.90796 0.93721 0.90509 0.91759 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.38 13.07 21.65 0.28 -54.10 16 2 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 3 Si 0.94 46.24 29.55 68.60 2.03 48.27 16 4 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.21 -10.58 8.73 84.03 0.73 -9.85 16 8 H 0.06 3.05 6.75 -2.91 -0.02 3.03 16 9 N -0.71 -30.36 3.55 -303.35 -1.08 -31.44 16 10 C 0.19 6.45 0.40 3.60 0.00 6.45 16 11 C 0.12 4.52 4.32 86.38 0.37 4.89 16 12 N -0.69 -23.90 5.14 -463.05 -2.38 -26.28 16 13 C 0.50 18.65 7.91 87.66 0.69 19.35 16 14 O -0.58 -26.93 16.50 16.01 0.26 -26.67 16 15 C 0.05 1.44 6.42 71.24 0.46 1.89 16 16 O -0.39 -12.24 9.71 -129.94 -1.26 -13.50 16 17 C 0.06 1.36 4.98 71.98 0.36 1.72 16 18 C -0.09 -1.88 3.19 -10.07 -0.03 -1.91 16 19 C -0.12 -2.79 6.22 31.69 0.20 -2.59 16 20 C -0.12 -2.16 6.91 31.91 0.22 -1.94 16 21 C -0.12 -1.73 6.83 31.67 0.22 -1.52 16 22 C -0.11 -1.62 6.46 31.32 0.20 -1.42 16 23 C -0.12 -3.83 4.56 30.59 0.14 -3.69 16 24 C -0.11 -3.33 5.76 30.59 0.18 -3.15 16 25 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 26 C -0.11 -2.94 5.75 30.56 0.18 -2.77 16 27 C -0.11 -2.88 4.65 30.56 0.14 -2.73 16 28 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.38 17.40 6.53 -92.71 -0.61 16.79 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.28 7.58 -2.39 -0.02 1.26 16 32 H 0.41 13.02 7.28 -92.71 -0.67 12.34 16 33 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.16 8.02 -2.39 -0.02 1.14 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.36 7.77 -2.38 -0.02 1.34 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.96 7.67 -2.38 -0.02 0.94 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.04 1.36 7.17 -2.39 -0.02 1.34 16 48 H 0.04 1.64 7.60 -2.39 -0.02 1.63 16 49 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 53 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.06 1.64 7.12 -2.39 -0.02 1.63 16 55 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.55 420.41 2.13 -65.42 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.42 Total: 40.89 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.70 Total: -2.59 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.17 Total: -111.82 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.00 Total: -40.17 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -67.55 2.13 -65.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115575953.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.897 kcal (2) G-P(sol) polarization free energy of solvation -67.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds