Wall clock time and date at job start Tue Mar 31 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 110.43668 * 2 1 4 4 C 1.54092 * 110.49169 * 122.54915 * 2 1 3 5 5 O 1.43743 * 107.29696 * 120.70118 * 4 2 1 6 6 C 1.44375 * 106.97454 * 333.49097 * 5 4 2 7 7 H 1.08993 * 110.61782 * 281.39672 * 6 5 4 8 8 C 1.53003 * 110.61737 * 158.55946 * 6 5 4 9 9 C 1.50696 * 109.47176 * 68.57668 * 8 6 5 10 10 O 1.21281 * 120.00218 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99815 * 179.97438 * 9 8 6 12 12 C 1.46507 * 119.99789 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46957 * 175.98490 * 12 11 9 14 14 N 1.46493 * 109.47312 * 305.25106 * 13 12 11 15 15 C 1.36942 * 120.00130 * 300.07487 * 14 13 12 16 16 H 1.07999 * 119.99262 * 354.07563 * 15 14 13 17 17 C 1.38807 * 119.99929 * 174.07000 * 15 14 13 18 18 N 1.31610 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99515 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46853 * 90.00496 * 19 17 15 21 21 H 1.48503 * 109.46836 * 210.00142 * 19 17 15 22 22 H 1.48498 * 109.47228 * 330.00279 * 19 17 15 23 23 C 1.52998 * 109.47248 * 185.24791 * 13 12 11 24 24 C 1.52999 * 109.47566 * 180.02562 * 23 13 12 25 25 C 1.52999 * 109.47398 * 59.99761 * 24 23 13 26 26 C 1.53004 * 109.47229 * 300.00505 * 25 24 23 27 27 C 1.53003 * 109.47010 * 65.25146 * 13 12 11 28 28 C 1.54989 * 110.34243 * 237.31049 * 2 1 3 29 29 H 1.09002 * 109.46800 * 298.90704 * 1 2 3 30 30 H 1.09001 * 109.47052 * 58.90372 * 1 2 3 31 31 H 1.09001 * 109.47346 * 178.90508 * 1 2 3 32 32 H 1.09000 * 109.47278 * 181.09072 * 3 2 1 33 33 H 1.09000 * 109.47161 * 301.09318 * 3 2 1 34 34 H 1.08999 * 109.46614 * 61.09126 * 3 2 1 35 35 H 1.08999 * 109.87957 * 1.27946 * 4 2 1 36 36 H 1.09002 * 110.00912 * 240.20261 * 4 2 1 37 37 H 1.09000 * 109.47103 * 188.57981 * 8 6 5 38 38 H 1.09001 * 109.47033 * 308.57635 * 8 6 5 39 39 H 0.96999 * 120.00482 * 0.02562 * 11 9 8 40 40 H 1.08998 * 109.46841 * 295.98697 * 12 11 9 41 41 H 1.08998 * 109.47102 * 55.98398 * 12 11 9 42 42 H 0.97005 * 120.00170 * 120.08076 * 14 13 12 43 43 H 0.97003 * 120.00530 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47130 * 300.00627 * 23 13 12 45 45 H 1.09003 * 109.46970 * 59.99586 * 23 13 12 46 46 H 1.09004 * 109.46399 * 299.99914 * 24 23 13 47 47 H 1.09002 * 109.47276 * 180.02562 * 24 23 13 48 48 H 1.08998 * 109.47144 * 180.02562 * 25 24 23 49 49 H 1.09004 * 109.46610 * 60.00207 * 25 24 23 50 50 H 1.09004 * 109.47143 * 300.00199 * 26 25 24 51 51 H 1.08996 * 109.47329 * 179.97438 * 26 25 24 52 52 H 1.09002 * 109.47154 * 299.99750 * 27 13 12 53 53 H 1.09004 * 109.47562 * 60.00078 * 27 13 12 54 54 H 1.08998 * 110.84564 * 143.89760 * 28 2 1 55 55 H 1.09007 * 111.04865 * 20.23736 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0694 -0.7766 1.2167 5 8 2.8754 -1.8547 0.7125 6 6 2.3780 -2.1723 -0.6052 7 1 1.4714 -2.7736 -0.5385 8 6 3.4464 -2.9004 -1.4233 9 6 3.6770 -4.2713 -0.8416 10 8 3.0484 -4.6308 0.1313 11 7 4.5811 -5.0982 -1.4031 12 6 4.8049 -6.4312 -0.8379 13 6 5.7987 -7.1964 -1.7141 14 7 5.3156 -7.2167 -3.0969 15 6 4.1058 -7.7869 -3.3913 16 1 3.5521 -8.3054 -2.6227 17 6 3.5914 -7.6981 -4.6775 18 7 4.2665 -7.0665 -5.6142 19 14 1.9408 -8.4753 -5.0787 20 1 0.8581 -7.4863 -4.8446 21 1 1.9257 -8.8980 -6.5022 22 1 1.7265 -9.6593 -4.2084 23 6 5.9329 -8.6310 -1.1996 24 6 6.9272 -9.3960 -2.0754 25 6 8.2912 -8.7052 -2.0214 26 6 8.1571 -7.2705 -2.5359 27 6 7.1629 -6.5057 -1.6605 28 6 2.0687 -0.7849 -1.2230 29 1 -0.3633 0.4968 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0196 32 1 3.1539 1.4155 -0.0196 33 1 1.6938 1.9596 -0.8800 34 1 1.7255 1.9476 0.8996 35 1 1.2392 -1.1757 1.7994 36 1 2.6767 -0.1195 1.8392 37 1 3.1110 -2.9956 -2.4560 38 1 4.3762 -2.3322 -1.3942 39 1 5.0837 -4.8108 -2.1814 40 1 5.2081 -6.3353 0.1702 41 1 3.8602 -6.9736 -0.8012 42 1 5.8527 -6.8264 -3.8041 43 1 3.9071 -7.0048 -6.5131 44 1 6.2923 -8.6158 -0.1706 45 1 4.9610 -9.1230 -1.2376 46 1 6.5680 -9.4112 -3.1044 47 1 7.0224 -10.4182 -1.7091 48 1 8.9994 -9.2500 -2.6457 49 1 8.6503 -8.6900 -0.9923 50 1 7.7979 -7.2857 -3.5650 51 1 9.1287 -6.7782 -2.4971 52 1 7.0673 -5.4836 -2.0271 53 1 7.5224 -6.4905 -0.6316 54 1 2.9753 -0.3216 -1.6125 55 1 1.3098 -0.8662 -2.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115626012.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:13 Heat of formation + Delta-G solvation = -120.097312 kcal Electronic energy + Delta-G solvation = -31304.822298 eV Core-core repulsion = 27339.796802 eV Total energy + Delta-G solvation = -3965.025496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.25766 -40.59056 -39.59130 -35.86657 -35.49920 -35.00030 -33.40458 -32.62509 -31.55742 -30.31192 -28.58407 -28.22056 -26.86944 -26.18178 -25.67963 -23.51384 -22.66474 -21.72062 -21.17239 -20.27824 -19.78959 -19.02554 -18.16537 -17.28497 -17.06236 -16.68339 -16.35055 -16.18300 -15.85176 -15.78021 -15.52403 -15.13241 -14.96596 -14.69079 -14.52683 -14.35667 -14.27354 -14.10127 -13.65563 -13.57389 -13.38893 -13.24592 -12.92452 -12.86033 -12.83180 -12.70800 -12.58529 -12.46194 -12.45493 -12.29394 -12.05097 -11.91514 -11.68635 -11.67974 -11.58758 -11.49516 -11.21613 -11.13696 -10.87710 -10.69212 -10.61982 -10.53398 -9.82485 -8.88990 -7.86964 -5.10706 1.43425 1.46757 1.51621 1.80802 2.42681 2.59286 2.93696 3.44939 3.46021 3.70818 3.82233 3.87543 3.92807 3.95047 4.03265 4.05141 4.14414 4.17216 4.36821 4.39296 4.44279 4.48779 4.58364 4.64506 4.67824 4.75782 4.77093 4.77467 4.79341 4.80297 4.81912 4.86482 4.93323 4.98499 5.02229 5.03646 5.08527 5.12157 5.19154 5.21405 5.22438 5.29942 5.43702 5.47370 5.49115 5.51729 5.59470 5.62619 5.74457 5.79757 6.02073 6.36253 6.75456 7.42846 7.45445 8.17868 8.45059 9.35275 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.003128 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.638499 B = 8950.134908 C =10438.082153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.046 3.954 5 O -0.390 6.390 6 C 0.094 3.906 7 H 0.049 0.951 8 C -0.130 4.130 9 C 0.503 3.497 10 O -0.590 6.590 11 N -0.698 5.698 12 C 0.124 3.876 13 C 0.191 3.809 14 N -0.707 5.707 15 C -0.206 4.206 16 H 0.057 0.943 17 C -0.060 4.060 18 N -0.957 5.957 19 Si 0.942 3.058 20 H -0.298 1.298 21 H -0.297 1.297 22 H -0.281 1.281 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.108 4.108 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.406 0.594 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.378 0.622 43 H 0.247 0.753 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.045 0.955 51 H 0.076 0.924 52 H 0.062 0.938 53 H 0.081 0.919 54 H 0.093 0.907 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 14.209 9.583 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.188 4.188 4 C -0.031 4.031 5 O -0.310 6.310 6 C 0.036 3.964 7 H 0.067 0.933 8 C -0.169 4.169 9 C 0.290 3.710 10 O -0.471 6.471 11 N -0.348 5.348 12 C -0.002 4.002 13 C 0.100 3.900 14 N -0.348 5.348 15 C -0.338 4.338 16 H 0.075 0.925 17 C -0.253 4.253 18 N -0.609 5.609 19 Si 0.775 3.225 20 H -0.226 1.226 21 H -0.224 1.224 22 H -0.207 1.207 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.146 4.146 28 C -0.173 4.173 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.242 0.758 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.212 0.788 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.063 0.937 51 H 0.095 0.905 52 H 0.081 0.919 53 H 0.100 0.900 54 H 0.111 0.889 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.563 13.750 10.386 17.422 hybrid contribution -1.287 -0.673 -1.148 1.851 sum 1.276 13.077 9.238 16.062 Atomic orbital electron populations 1.21881 0.92960 1.01614 1.03101 1.21972 0.96877 0.97042 0.93841 1.21805 1.00971 0.93111 1.02949 1.23476 0.94894 0.88337 0.96365 1.88931 1.56581 1.53456 1.32034 1.22771 0.95050 0.95867 0.82719 0.93286 1.21770 1.02311 0.91932 1.00924 1.21106 0.78770 0.87826 0.83251 1.90640 1.49672 1.77862 1.28935 1.45743 1.41133 1.15198 1.32745 1.21661 0.98972 0.83313 0.96272 1.20007 0.91909 0.93385 0.84665 1.42443 1.20020 1.69397 1.02967 1.19164 0.96111 1.24847 0.93712 0.92467 1.25089 1.00542 1.02855 0.96814 1.69732 1.39546 1.49530 1.02081 0.85600 0.82186 0.78163 0.76582 1.22565 1.22373 1.20703 1.21819 0.98648 0.96339 0.98883 1.21308 0.95330 0.98016 0.99691 1.21456 0.96076 0.95524 1.01458 1.21436 0.98775 0.95859 0.98908 1.21661 0.93302 0.98614 1.01015 1.23354 1.02938 0.93170 0.97873 0.91355 0.90988 0.93771 0.92324 0.91258 0.91466 0.93234 0.88867 0.86186 0.86157 0.75765 0.92377 0.95372 0.78782 0.94417 0.91091 0.94581 0.93911 0.92377 0.91962 0.90875 0.93665 0.90546 0.91942 0.90047 0.88871 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.25 71.98 0.59 -1.54 16 2 C -0.10 -1.67 0.99 -51.13 -0.05 -1.72 16 3 C -0.13 -1.67 8.28 71.98 0.60 -1.07 16 4 C 0.05 1.03 7.03 72.35 0.51 1.54 16 5 O -0.39 -12.01 10.75 -141.24 -1.52 -13.53 16 6 C 0.09 2.59 2.77 31.28 0.09 2.67 16 7 H 0.05 1.58 7.96 -2.39 -0.02 1.57 16 8 C -0.13 -3.58 5.47 29.85 0.16 -3.42 16 9 C 0.50 18.65 7.75 87.66 0.68 19.33 16 10 O -0.59 -26.68 15.61 4.71 0.07 -26.61 16 11 N -0.70 -24.99 5.14 -463.06 -2.38 -27.37 16 12 C 0.12 4.69 4.32 86.38 0.37 5.06 16 13 C 0.19 6.72 0.40 3.60 0.00 6.72 16 14 N -0.71 -30.95 3.56 -303.36 -1.08 -32.03 16 15 C -0.21 -10.61 8.72 84.03 0.73 -9.87 16 16 H 0.06 3.05 6.75 -2.91 -0.02 3.04 16 17 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 18 N -0.96 -54.53 13.07 21.65 0.28 -54.25 16 19 Si 0.94 46.05 29.55 68.60 2.03 48.08 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 23 C -0.12 -3.97 4.56 30.59 0.14 -3.83 16 24 C -0.11 -3.39 5.77 30.59 0.18 -3.22 16 25 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 26 C -0.11 -3.06 5.75 30.58 0.18 -2.88 16 27 C -0.11 -3.04 4.65 30.58 0.14 -2.90 16 28 C -0.14 -2.60 5.71 31.96 0.18 -2.41 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 1.14 7.69 -2.39 -0.02 1.12 16 36 H 0.09 1.78 7.70 -2.39 -0.02 1.76 16 37 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.41 13.62 7.27 -92.71 -0.67 12.94 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.26 7.58 -2.39 -0.02 1.24 16 42 H 0.38 17.71 6.53 -92.70 -0.61 17.10 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.04 1.40 7.17 -2.39 -0.02 1.38 16 46 H 0.04 1.70 7.61 -2.38 -0.02 1.68 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.04 1.50 6.86 -2.38 -0.02 1.48 16 51 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.06 1.72 7.11 -2.39 -0.02 1.70 16 53 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 54 H 0.09 1.54 7.79 -2.39 -0.02 1.53 16 55 H 0.09 1.58 7.87 -2.38 -0.02 1.56 16 Total: -1.00 -67.27 417.18 2.14 -65.13 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.42 Total: 43.56 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.15 Total: -2.99 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.17 Total: -113.65 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.44 Total: -40.14 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.27 2.14 -65.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115626012.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.968 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds