Wall clock time and date at job start Tue Mar 31 2020 20:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00021 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.27843 * 12 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47090 * 54.99784 * 16 15 14 18 18 C 1.53005 * 109.47116 * 294.99847 * 16 15 14 19 19 C 1.52996 * 109.47351 * 299.99853 * 18 16 15 20 20 C 1.52999 * 109.47234 * 299.99835 * 19 18 16 21 21 C 1.53010 * 109.46951 * 60.00147 * 20 19 18 22 22 C 1.52999 * 109.47323 * 175.00101 * 16 15 14 23 23 H 1.09001 * 109.47082 * 179.97438 * 22 16 15 24 24 N 1.46904 * 109.47024 * 299.99856 * 22 16 15 25 25 C 1.47014 * 111.00010 * 303.63636 * 24 22 16 26 26 C 1.53098 * 109.25514 * 177.60740 * 25 24 22 27 27 O 1.43012 * 109.25967 * 56.84665 * 26 25 24 28 28 C 1.43012 * 113.74256 * 301.32846 * 27 26 25 29 29 C 1.47010 * 110.99818 * 179.97438 * 24 22 16 30 30 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 32 32 H 1.09001 * 109.46310 * 299.99503 * 9 7 2 33 33 H 1.09000 * 109.47849 * 59.99708 * 10 9 7 34 34 H 1.08998 * 109.47443 * 299.99576 * 10 9 7 35 35 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 36 36 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 37 37 H 0.97000 * 119.99894 * 359.71837 * 14 12 11 38 38 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 39 39 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 40 40 H 1.09001 * 109.46783 * 60.00198 * 18 16 15 41 41 H 1.09001 * 109.46899 * 179.97438 * 18 16 15 42 42 H 1.08993 * 109.47450 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.46872 * 59.99702 * 19 18 16 44 44 H 1.08994 * 109.47531 * 300.00253 * 20 19 18 45 45 H 1.08999 * 109.47296 * 179.97438 * 20 19 18 46 46 H 1.08996 * 109.46724 * 180.02562 * 21 20 19 47 47 H 1.08994 * 109.46917 * 59.99730 * 21 20 19 48 48 H 1.08998 * 109.50173 * 297.53968 * 25 24 22 49 49 H 1.08997 * 109.50359 * 57.66855 * 25 24 22 50 50 H 1.08998 * 109.50617 * 296.91131 * 26 25 24 51 51 H 1.09003 * 109.50426 * 176.78271 * 26 25 24 52 52 H 1.09001 * 109.50631 * 298.73652 * 28 27 26 53 53 H 1.08992 * 109.54354 * 178.62773 * 28 27 26 54 54 H 1.08996 * 109.51508 * 302.33050 * 29 24 22 55 55 H 1.09004 * 109.50338 * 62.46533 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4598 -6.1325 -0.0024 13 8 3.6522 -5.9108 -0.0027 14 7 2.0106 -7.4032 -0.0086 15 6 2.9627 -8.5166 -0.0150 16 6 2.1977 -9.8416 -0.0206 17 1 1.5047 -9.8575 -0.8617 18 6 1.4163 -9.9849 1.2870 19 6 2.3891 -9.9626 2.4677 20 6 3.3784 -11.1221 2.3353 21 6 4.1600 -10.9788 1.0277 22 6 3.1871 -11.0011 -0.1530 23 1 2.6422 -11.9451 -0.1565 24 7 3.9375 -10.8636 -1.4084 25 6 3.0276 -10.7943 -2.5611 26 6 3.8461 -10.5918 -3.8390 27 8 4.7973 -11.6525 -3.9630 28 6 5.6998 -11.7487 -2.8578 29 6 4.9005 -11.9626 -1.5697 30 1 -0.4851 0.8400 0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6242 -2.5575 0.8881 33 1 2.8715 -3.6047 0.8890 34 1 2.8727 -3.6039 -0.8909 35 1 0.8541 -5.0447 -0.8923 36 1 0.8534 -5.0450 0.8877 37 1 1.0569 -7.5804 -0.0086 38 1 3.5886 -8.4543 -0.9052 39 1 3.5900 -8.4634 0.8748 40 1 0.7114 -9.1588 1.3813 41 1 0.8710 -10.9287 1.2828 42 1 1.8324 -10.0642 3.3992 43 1 2.9340 -9.0186 2.4716 44 1 2.8336 -12.0661 2.3312 45 1 4.0718 -11.1060 3.1762 46 1 4.8645 -11.8051 0.9332 47 1 4.7049 -10.0349 1.0317 48 1 2.4619 -11.7231 -2.6346 49 1 2.3405 -9.9580 -2.4325 50 1 4.3700 -9.6373 -3.7882 51 1 3.1805 -10.5969 -4.7022 52 1 6.2776 -10.8279 -2.7785 53 1 6.3754 -12.5902 -3.0110 54 1 5.5801 -11.9791 -0.7177 55 1 4.3649 -12.9103 -1.6272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124018764.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:52 Heat of formation + Delta-G solvation = -128.992507 kcal Electronic energy + Delta-G solvation = -30568.530414 eV Core-core repulsion = 26603.119193 eV Total energy + Delta-G solvation = -3965.411220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55646 -40.50757 -39.37704 -36.29535 -36.06358 -35.41339 -34.01102 -32.61809 -31.61014 -31.05281 -29.82395 -27.73891 -26.60023 -25.49879 -25.01754 -23.04332 -22.73686 -22.21385 -21.32888 -21.11520 -19.74469 -18.54349 -18.03410 -17.63252 -17.05356 -16.97802 -16.83686 -16.46785 -16.29781 -15.94556 -15.90705 -15.80685 -15.28342 -15.00937 -14.83711 -14.63348 -14.49015 -14.19375 -13.94302 -13.75370 -13.46173 -13.42059 -13.27763 -13.04203 -12.64122 -12.55166 -12.50746 -12.42818 -12.36155 -12.32585 -12.29204 -12.07351 -11.55318 -11.54535 -11.45404 -11.27528 -11.25690 -11.16263 -10.87500 -10.70302 -10.62653 -10.53976 -9.95857 -9.32520 -8.19980 -6.29791 1.39513 1.40631 1.52226 1.72790 2.29244 2.42768 2.68118 2.94249 3.12837 3.60052 3.63479 3.89666 3.92092 3.97651 4.02679 4.14044 4.18845 4.22415 4.25062 4.26349 4.28300 4.31743 4.37068 4.43752 4.47904 4.54676 4.60751 4.70375 4.75395 4.78517 4.81623 4.85832 4.88961 4.95610 4.98933 5.01769 5.06310 5.12279 5.15358 5.18628 5.20353 5.26858 5.34324 5.37426 5.53143 5.55358 5.58827 5.76583 5.87680 5.97982 6.03528 6.16524 6.28333 6.63295 6.85572 7.35496 7.38957 8.91516 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.002130 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.580414 B =13139.445472 C =14253.321720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.717 5.717 15 C 0.133 3.867 16 C -0.085 4.085 17 H 0.088 0.912 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.115 4.115 22 C 0.101 3.899 23 H 0.056 0.944 24 N -0.545 5.545 25 C 0.019 3.981 26 C 0.060 3.940 27 O -0.405 6.405 28 C 0.059 3.941 29 C 0.020 3.980 30 H 0.265 0.735 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.413 0.587 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.093 0.907 50 H 0.048 0.952 51 H 0.110 0.890 52 H 0.051 0.949 53 H 0.114 0.886 54 H 0.098 0.902 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -32.951 -0.325 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.302 3.698 13 O -0.467 6.467 14 N -0.370 5.370 15 C 0.010 3.990 16 C -0.104 4.104 17 H 0.106 0.894 18 C -0.149 4.149 19 C -0.163 4.163 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.007 4.007 23 H 0.074 0.926 24 N -0.270 5.270 25 C -0.109 4.109 26 C -0.017 4.017 27 O -0.324 6.324 28 C -0.018 4.018 29 C -0.108 4.108 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.066 0.934 51 H 0.128 0.872 52 H 0.069 0.931 53 H 0.132 0.868 54 H 0.116 0.884 55 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.368 -32.397 -0.470 32.693 hybrid contribution -0.409 0.610 0.150 0.749 sum 3.959 -31.787 -0.320 32.034 Atomic orbital electron populations 1.70061 1.07455 1.27781 1.51603 1.25901 0.95843 1.03036 0.94707 0.85507 0.78626 0.78737 0.78559 1.19698 1.20223 1.19350 1.21695 0.93302 0.92874 1.50694 0.93186 1.19015 0.94179 0.92345 0.95515 1.21147 0.97597 0.93150 1.00109 1.21674 0.97942 0.91773 1.05621 1.21016 0.89277 0.84945 0.74569 1.90666 1.19178 1.85568 1.51311 1.45950 1.11163 1.04786 1.75085 1.21341 0.91585 0.84573 1.01501 1.21405 0.96815 0.92567 0.99575 0.89370 1.21570 0.97500 1.03081 0.92760 1.21592 0.97620 0.98466 0.98640 1.21481 0.98016 0.98794 0.96717 1.21661 0.97789 1.02269 0.93590 1.21551 0.93604 0.96722 0.88835 0.92646 1.62219 1.17859 1.44856 1.02111 1.22798 0.95359 1.01971 0.90746 1.22748 0.91153 0.89886 0.97870 1.87950 1.46992 1.53461 1.43981 1.22796 0.91530 1.02588 0.84849 1.22814 0.96173 0.92275 0.99513 0.92651 0.98053 0.98044 0.94303 0.94294 0.87468 0.87468 0.75012 0.92504 0.92670 0.91080 0.90124 0.91217 0.93464 0.90844 0.91611 0.90915 0.92558 0.93614 0.88897 0.93387 0.87183 0.93081 0.86835 0.88351 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.67 4.44 30.59 0.14 -3.53 16 11 C -0.13 -4.25 5.70 29.85 0.17 -4.08 16 12 C 0.51 16.45 7.83 87.66 0.69 17.13 16 13 O -0.59 -24.54 15.98 -3.04 -0.05 -24.59 16 14 N -0.72 -15.67 5.28 -463.07 -2.45 -18.11 16 15 C 0.13 2.75 4.27 86.38 0.37 3.12 16 16 C -0.08 -1.09 1.74 -10.79 -0.02 -1.11 16 17 H 0.09 0.99 6.30 -2.39 -0.02 0.98 16 18 C -0.11 -1.21 5.32 30.59 0.16 -1.05 16 19 C -0.13 -1.64 5.65 30.59 0.17 -1.47 16 20 C -0.11 -1.25 5.92 30.60 0.18 -1.07 16 21 C -0.12 -1.48 4.70 30.60 0.14 -1.34 16 22 C 0.10 1.27 1.63 44.92 0.07 1.34 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 N -0.54 -8.07 3.74 -869.97 -3.26 -11.33 16 25 C 0.02 0.27 5.25 86.31 0.45 0.72 16 26 C 0.06 0.98 7.01 72.01 0.50 1.48 16 27 O -0.40 -7.62 10.83 -148.98 -1.61 -9.24 16 28 C 0.06 0.86 7.01 72.02 0.50 1.36 16 29 C 0.02 0.26 5.34 86.32 0.46 0.72 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.04 1.82 8.10 -2.39 -0.02 1.81 16 34 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.41 6.27 7.66 -92.71 -0.71 5.56 16 38 H 0.06 1.45 7.45 -2.39 -0.02 1.43 16 39 H 0.06 1.34 4.82 -2.39 -0.01 1.33 16 40 H 0.07 0.76 7.18 -2.39 -0.02 0.74 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.05 0.84 6.32 -2.39 -0.02 0.83 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.79 6.35 -2.39 -0.02 0.78 16 47 H 0.06 0.99 6.54 -2.39 -0.02 0.97 16 48 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.09 1.26 6.11 -2.39 -0.01 1.24 16 50 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 54 H 0.10 1.08 6.19 -2.39 -0.01 1.06 16 55 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -74.53 410.64 -0.06 -74.59 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.15 Total: 15.39 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.84 Total: -17.95 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -5.42 Total: -85.83 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.66 Total: -33.82 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.53 -0.06 -74.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124018764.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.407 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds