Wall clock time and date at job start Tue Mar 31 2020 21:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.62686 * 2 1 4 4 O 1.21274 * 120.00420 * 94.29151 * 3 2 1 5 5 N 1.34783 * 119.99520 * 274.29035 * 3 2 1 6 6 C 1.46500 * 119.99906 * 184.80839 * 5 3 2 7 7 C 1.52992 * 109.47313 * 180.02562 * 6 5 3 8 8 H 1.09001 * 109.47421 * 304.99984 * 7 6 5 9 9 C 1.54802 * 109.47262 * 184.99887 * 7 6 5 10 10 N 1.45127 * 109.53512 * 172.12437 * 9 7 6 11 11 C 1.36932 * 118.76224 * 269.26131 * 10 9 7 12 12 H 1.08001 * 119.99757 * 26.46005 * 11 10 9 13 13 C 1.38810 * 120.00154 * 206.46293 * 11 10 9 14 14 N 1.31615 * 119.99961 * 14.11487 * 13 11 10 15 15 Si 1.86798 * 120.00035 * 194.12280 * 13 11 10 16 16 H 1.48507 * 109.47411 * 59.99669 * 15 13 11 17 17 H 1.48501 * 109.47568 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47046 * 299.99740 * 15 13 11 19 19 C 1.47499 * 122.48875 * 89.30746 * 10 9 7 20 20 C 1.53571 * 111.01625 * 318.35396 * 19 10 9 21 21 C 1.51534 * 109.57951 * 320.02523 * 20 19 10 22 22 O 1.38021 * 109.46759 * 64.99727 * 7 6 5 23 23 C 1.50476 * 109.78939 * 120.48347 * 2 1 3 24 24 C 1.54071 * 112.49739 * 213.95824 * 23 2 1 25 25 C 1.54065 * 112.81751 * 318.28242 * 24 23 2 26 26 C 1.50470 * 112.49791 * 318.28641 * 25 24 23 27 27 C 1.54235 * 108.52459 * 94.15025 * 26 25 24 28 28 C 1.45545 * 112.40555 * 280.01269 * 27 26 25 29 29 H 1.09001 * 109.47093 * 60.00227 * 1 2 3 30 30 H 1.09003 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47296 * 300.00465 * 1 2 3 32 32 H 0.96997 * 120.00150 * 4.81255 * 5 3 2 33 33 H 1.09005 * 109.47194 * 60.00033 * 6 5 3 34 34 H 1.09005 * 109.46939 * 300.00488 * 6 5 3 35 35 H 1.08995 * 109.46348 * 292.14543 * 9 7 6 36 36 H 1.09004 * 109.45959 * 52.11628 * 9 7 6 37 37 H 0.96999 * 119.99962 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.16416 * 197.95612 * 19 10 9 39 39 H 1.09003 * 109.13310 * 78.72746 * 19 10 9 40 40 H 1.09002 * 109.44758 * 199.99464 * 20 19 10 41 41 H 1.08995 * 109.45447 * 80.06355 * 20 19 10 42 42 H 1.09005 * 109.59204 * 331.62650 * 21 20 19 43 43 H 1.08998 * 109.58950 * 211.18980 * 21 20 19 44 44 H 1.09002 * 108.87374 * 334.73227 * 23 2 1 45 45 H 1.08999 * 108.87941 * 93.18130 * 23 2 1 46 46 H 1.09000 * 108.80951 * 197.42052 * 24 23 2 47 47 H 1.09005 * 108.81066 * 79.14498 * 24 23 2 48 48 H 1.09000 * 108.87717 * 197.50345 * 25 24 23 49 49 H 1.09002 * 108.79756 * 79.00769 * 25 24 23 50 50 H 1.09005 * 109.62665 * 334.43978 * 26 25 24 51 51 H 1.09005 * 109.78647 * 213.95683 * 26 25 24 52 52 H 1.09001 * 108.89758 * 159.26159 * 27 26 25 53 53 H 1.08998 * 108.82101 * 40.71645 * 27 26 25 54 54 H 1.09000 * 108.89824 * 301.18317 * 28 27 26 55 55 H 1.08994 * 108.81812 * 182.64163 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0361 1.4195 0.0000 4 8 2.3139 1.9643 1.0473 5 7 2.1802 2.0835 -1.1640 6 6 2.7707 3.4242 -1.1743 7 6 2.8181 3.9496 -2.6104 8 1 3.3486 3.2362 -3.2411 9 6 3.5553 5.3105 -2.6379 10 7 3.7656 5.7208 -4.0140 11 6 4.9234 5.3481 -4.6431 12 1 5.4457 4.4566 -4.3289 13 6 5.4257 6.1163 -5.6844 14 7 4.9627 7.3312 -5.8887 15 14 6.7587 5.4255 -6.7959 16 1 6.2584 4.1976 -7.4648 17 1 7.1206 6.4362 -7.8220 18 1 7.9572 5.0938 -5.9843 19 6 2.7798 6.5249 -4.7604 20 6 1.3495 6.0395 -4.4828 21 6 1.3287 4.5253 -4.4283 22 8 1.5317 4.1135 -3.0829 23 6 2.0394 -0.7183 1.2202 24 6 3.3499 -0.1117 1.7571 25 6 4.3398 0.2592 0.6363 26 6 4.4043 -0.7860 -0.4441 27 6 3.4263 -0.3892 -1.5688 28 6 2.0481 -0.7349 -1.2531 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8929 1.6737 -1.9949 33 1 3.7820 3.3789 -0.7701 34 1 2.1647 4.0928 -0.5629 35 1 2.9538 6.0599 -2.1235 36 1 4.5185 5.2119 -2.1373 37 1 5.3140 7.8682 -6.6162 38 1 2.9851 6.4422 -5.8277 39 1 2.8684 7.5687 -4.4590 40 1 0.6887 6.3833 -5.2786 41 1 1.0084 6.4419 -3.5290 42 1 2.1248 4.1260 -5.0568 43 1 0.3641 4.1602 -4.7807 44 1 1.2811 -0.6674 2.0016 45 1 2.2127 -1.7642 0.9671 46 1 3.8252 -0.8336 2.4212 47 1 3.1135 0.7859 2.3286 48 1 5.3329 0.3810 1.0689 49 1 4.0302 1.2058 0.1933 50 1 4.1174 -1.7545 -0.0342 51 1 5.4172 -0.8427 -0.8428 52 1 3.7171 -0.9007 -2.4863 53 1 3.4925 0.6869 -1.7289 54 1 1.9836 -1.8097 -1.0838 55 1 1.4167 -0.4733 -2.1021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149848094.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:36 Heat of formation + Delta-G solvation = -72.100411 kcal Electronic energy + Delta-G solvation = -32612.575307 eV Core-core repulsion = 28649.631113 eV Total energy + Delta-G solvation = -3962.944194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.39201 -40.48952 -38.12329 -37.01796 -36.14334 -34.73658 -33.80163 -33.45842 -32.76075 -30.10705 -28.62572 -27.37716 -27.07339 -25.50678 -25.02690 -24.05900 -22.63557 -22.26572 -21.36764 -20.80636 -20.16496 -18.86890 -17.66830 -17.40412 -17.38377 -16.94208 -16.62761 -16.54561 -16.16449 -15.81467 -15.55950 -15.44346 -14.92021 -14.65241 -14.63736 -14.23614 -14.11645 -13.95035 -13.79281 -13.64900 -13.43584 -13.15628 -13.12548 -13.01329 -12.83947 -12.75245 -12.51065 -12.49439 -12.39887 -12.15533 -12.09419 -11.76673 -11.62224 -11.49307 -11.42970 -11.31794 -11.25995 -11.19796 -11.01406 -10.53878 -10.35055 -10.19687 -9.80541 -8.72425 -7.89658 -5.37974 1.46137 1.46816 1.53962 1.80135 2.26517 2.49450 2.76280 3.25831 3.54114 3.60068 3.64161 3.87242 4.00880 4.06583 4.13623 4.20301 4.21829 4.24469 4.33748 4.35597 4.46002 4.51564 4.53492 4.55474 4.59087 4.66984 4.73768 4.81609 4.83193 4.86417 4.90532 4.99047 5.05641 5.08597 5.13838 5.14836 5.18284 5.23890 5.26840 5.28685 5.31488 5.36283 5.39792 5.40649 5.46281 5.52387 5.60247 5.61794 5.70780 5.75075 6.35001 6.65739 6.74607 7.13765 7.39063 7.85586 8.27020 9.15788 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003297 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.124586 B = 8490.459041 C = 9360.173493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C 0.531 3.469 4 O -0.575 6.575 5 N -0.714 5.714 6 C 0.143 3.857 7 C 0.090 3.910 8 H 0.044 0.956 9 C 0.123 3.877 10 N -0.605 5.605 11 C -0.270 4.270 12 H 0.067 0.933 13 C -0.044 4.044 14 N -0.935 5.935 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.295 1.295 18 H -0.278 1.278 19 C 0.186 3.814 20 C -0.165 4.165 21 C 0.092 3.908 22 O -0.391 6.391 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.112 4.112 27 C -0.147 4.147 28 C -0.106 4.106 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.250 0.750 38 H 0.048 0.952 39 H -0.009 1.009 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.057 0.943 52 H 0.073 0.927 53 H 0.061 0.939 54 H 0.092 0.908 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -19.242 8.694 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C 0.320 3.680 4 O -0.455 6.455 5 N -0.367 5.367 6 C 0.018 3.982 7 C 0.028 3.972 8 H 0.062 0.938 9 C -0.005 4.005 10 N -0.327 5.327 11 C -0.401 4.401 12 H 0.085 0.915 13 C -0.240 4.240 14 N -0.581 5.581 15 Si 0.793 3.207 16 H -0.201 1.201 17 H -0.221 1.221 18 H -0.204 1.204 19 C 0.061 3.939 20 C -0.204 4.204 21 C 0.016 3.984 22 O -0.310 6.310 23 C -0.132 4.132 24 C -0.154 4.154 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.185 4.185 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.010 0.990 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.096 0.904 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.080 0.920 54 H 0.110 0.890 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.542 -18.721 9.414 23.025 hybrid contribution 1.349 0.693 -1.181 1.922 sum -8.193 -18.028 8.233 21.446 Atomic orbital electron populations 1.21855 0.90922 1.04120 1.02306 1.20657 0.97839 0.90247 0.98724 1.20856 0.75670 0.88782 0.82682 1.90632 1.52236 1.70279 1.32333 1.46158 1.63233 1.17047 1.10256 1.21097 0.98447 0.83934 0.94674 1.22238 0.84615 0.97163 0.93181 0.93792 1.21562 0.98188 0.94615 0.86119 1.44011 1.18066 1.62008 1.08617 1.19470 1.01508 1.04891 1.14188 0.91525 1.25770 1.00635 0.95141 1.02412 1.70216 1.46439 1.08964 1.32463 0.85390 0.79401 0.77378 0.78559 1.20063 1.22121 1.20374 1.20774 0.86090 0.91239 0.95765 1.22631 0.97821 0.97920 1.01998 1.22074 1.01073 0.93240 0.82035 1.86105 1.27311 1.87848 1.29763 1.21250 0.96700 0.99569 0.95684 1.21985 0.94919 1.00722 0.97810 1.21633 0.98774 0.99592 0.97165 1.21304 0.99172 0.99074 0.95357 1.20893 0.95654 1.02769 0.99135 1.20593 0.96170 1.01604 0.95918 0.91756 0.88975 0.93064 0.75278 0.90923 0.92038 0.94143 0.93352 0.94102 0.93361 0.99049 0.89696 0.92272 0.94134 0.87348 0.91687 0.89525 0.92419 0.92076 0.93618 0.92957 0.90414 0.92373 0.90854 0.92049 0.88955 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.15 71.98 0.59 -1.37 16 2 C -0.07 -1.26 0.73 -53.33 -0.04 -1.30 16 3 C 0.53 13.39 3.30 87.66 0.29 13.68 16 4 O -0.57 -18.61 12.44 -3.01 -0.04 -18.64 16 5 N -0.71 -17.80 3.45 -463.05 -1.60 -19.40 16 6 C 0.14 4.28 5.33 86.38 0.46 4.74 16 7 C 0.09 3.03 2.68 31.21 0.08 3.11 16 8 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 9 C 0.12 5.08 5.12 87.25 0.45 5.53 16 10 N -0.60 -29.47 2.22 -698.18 -1.55 -31.02 16 11 C -0.27 -14.39 9.47 84.03 0.80 -13.59 16 12 H 0.07 3.45 7.87 -2.91 -0.02 3.43 16 13 C -0.04 -2.39 4.92 84.86 0.42 -1.98 16 14 N -0.94 -54.32 10.93 21.65 0.24 -54.09 16 15 Si 0.96 43.84 29.58 68.60 2.03 45.87 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 C 0.19 8.85 4.69 86.38 0.41 9.26 16 20 C -0.16 -5.94 5.78 30.31 0.18 -5.76 16 21 C 0.09 2.98 6.37 71.50 0.46 3.44 16 22 O -0.39 -12.87 9.38 -117.95 -1.11 -13.97 16 23 C -0.09 -1.64 4.62 30.14 0.14 -1.50 16 24 C -0.12 -2.60 5.07 31.32 0.16 -2.44 16 25 C -0.13 -3.16 5.15 30.14 0.16 -3.00 16 26 C -0.11 -2.07 5.61 30.19 0.17 -1.91 16 27 C -0.15 -2.58 5.08 28.74 0.15 -2.43 16 28 C -0.11 -1.47 3.80 28.74 0.11 -1.36 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.87 8.11 -2.39 -0.02 0.85 16 32 H 0.41 8.95 6.75 -92.71 -0.63 8.32 16 33 H 0.07 2.24 8.10 -2.38 -0.02 2.23 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 36 H 0.05 2.03 7.98 -2.38 -0.02 2.01 16 37 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.05 2.55 6.35 -2.39 -0.02 2.53 16 39 H -0.01 -0.46 8.03 -2.39 -0.02 -0.48 16 40 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 42 H 0.04 1.51 7.40 -2.38 -0.02 1.49 16 43 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 1.11 7.69 -2.39 -0.02 1.09 16 45 H 0.09 1.12 6.63 -2.39 -0.02 1.10 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 1.73 6.07 -2.38 -0.01 1.71 16 48 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 1.47 4.13 -2.39 -0.01 1.46 16 50 H 0.08 1.20 6.98 -2.38 -0.02 1.18 16 51 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 52 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.06 1.34 4.45 -2.39 -0.01 1.33 16 54 H 0.09 0.95 7.47 -2.39 -0.02 0.93 16 55 H 0.08 0.93 7.63 -2.39 -0.02 0.91 16 Total: -1.00 -64.80 392.71 3.16 -61.64 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.24 Total: 26.49 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 4.96 Total: 3.12 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -2.92 Total: -104.50 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.14 Total: -32.62 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.80 3.16 -61.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149848094.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.462 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds